Wall clock time and date at job start Mon Mar 30 2020 04:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99832 * 2 1 4 4 H 1.48500 * 109.46962 * 270.00128 * 3 2 1 5 5 H 1.48491 * 109.47035 * 30.00063 * 3 2 1 6 6 H 1.48498 * 109.47207 * 150.00273 * 3 2 1 7 7 C 1.37879 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00056 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99504 * 179.97438 * 7 2 1 10 10 C 1.53497 * 114.19908 * 180.02562 * 9 7 2 11 11 N 1.47063 * 87.98457 * 139.65495 * 10 9 7 12 12 C 1.34781 * 136.05979 * 152.83745 * 11 10 9 13 13 O 1.21611 * 119.99707 * 0.02562 * 12 11 10 14 14 C 1.47387 * 120.00019 * 180.02562 * 12 11 10 15 15 N 1.31570 * 126.82623 * 0.02562 * 14 12 11 16 16 N 1.28387 * 111.96949 * 179.97438 * 15 14 12 17 17 H 0.97001 * 124.37064 * 179.97438 * 16 15 14 18 18 C 1.37045 * 111.25179 * 0.27216 * 16 15 14 19 19 C 1.39134 * 134.71857 * 180.46109 * 18 16 15 20 20 C 1.36683 * 119.78218 * 179.55281 * 19 18 16 21 21 C 1.38901 * 120.89626 * 359.72192 * 20 19 18 22 22 C 1.36718 * 120.52316 * 0.02562 * 21 20 19 23 23 C 1.39197 * 119.51309 * 359.97438 * 22 21 20 24 24 C 1.47063 * 87.88626 * 333.10195 * 11 10 9 25 25 H 0.97000 * 120.00116 * 359.97438 * 1 2 3 26 26 H 1.08991 * 113.28219 * 46.94002 * 9 7 2 27 27 H 1.08997 * 113.47208 * 24.87553 * 10 9 7 28 28 H 1.09001 * 113.46315 * 254.43428 * 10 9 7 29 29 H 1.07995 * 120.10503 * 359.27737 * 19 18 16 30 30 H 1.08001 * 119.55060 * 179.74407 * 20 19 18 31 31 H 1.07996 * 119.73616 * 179.97438 * 21 20 19 32 32 H 1.08002 * 120.24683 * 179.97438 * 22 21 20 33 33 H 1.08995 * 113.47563 * 141.68101 * 24 11 10 34 34 H 1.09005 * 113.46591 * 272.12137 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.1409 -2.5939 -0.0023 11 7 5.1410 -2.0869 -0.9538 12 6 6.4145 -2.3885 -1.2760 13 8 6.9894 -3.2927 -0.7008 14 6 7.1105 -1.6224 -2.3253 15 7 6.6210 -0.6240 -3.0287 16 7 7.4765 -0.1626 -3.8675 17 1 7.3049 0.5730 -4.4760 18 6 8.6612 -0.8479 -3.7965 19 6 9.8845 -0.7588 -4.4532 20 6 10.8948 -1.6194 -4.1263 21 6 10.7206 -2.5822 -3.1404 22 6 9.5305 -2.6882 -2.4759 23 6 8.4884 -1.8216 -2.7933 24 6 4.1423 -1.1015 -1.3946 25 1 -0.4850 0.8400 0.0004 26 1 3.9426 -0.5105 0.7304 27 1 3.4915 -3.3615 -0.4231 28 1 4.5639 -2.8804 0.9606 29 1 10.0338 -0.0150 -5.2218 30 1 11.8415 -1.5497 -4.6414 31 1 11.5314 -3.2529 -2.8974 32 1 9.3997 -3.4387 -1.7104 33 1 4.5664 -0.1215 -1.6133 34 1 3.4931 -1.4674 -2.1901 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598036167.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:07 Heat of formation + Delta-G solvation = 94.328995 kcal Electronic energy + Delta-G solvation = -19761.451275 eV Core-core repulsion = 16662.150532 eV Total energy + Delta-G solvation = -3099.300743 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.48665 -39.47294 -37.84869 -37.16419 -32.72192 -32.50816 -30.41770 -30.28173 -29.17282 -25.76461 -25.06110 -23.65282 -22.91268 -22.33854 -20.00429 -18.61656 -17.98148 -17.44076 -17.05333 -16.20477 -15.82090 -15.39082 -15.28274 -14.82552 -14.24314 -14.00584 -13.87502 -13.34827 -12.89595 -12.40348 -12.32480 -12.14994 -11.77023 -11.71379 -11.34904 -11.02697 -10.88361 -10.65636 -10.21103 -9.98270 -9.89239 -9.44548 -9.19737 -8.90319 -8.65853 -8.28296 -7.98137 -6.19362 -4.21999 0.76145 1.23912 1.95099 2.62421 3.22745 3.28948 3.33187 3.34336 3.45909 3.79331 4.31437 4.32766 4.41812 4.67178 4.82048 4.99899 5.05675 5.24990 5.36447 5.50437 5.79411 5.82630 5.98098 6.05128 6.13034 6.27993 6.29353 6.37176 6.44435 6.48487 6.56792 6.67631 6.93104 7.20617 7.56634 7.76659 8.25907 8.37787 8.59607 8.83924 9.41558 10.92584 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.031315 B = 0.004687 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.931397 B = 5972.690839 C = 6636.691033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.509 4.509 8 H 0.081 0.919 9 C -0.016 4.016 10 C 0.117 3.883 11 N -0.629 5.629 12 C 0.619 3.381 13 O -0.550 6.550 14 C 0.019 3.981 15 N -0.198 5.198 16 N -0.420 5.420 17 H 0.446 0.554 18 C 0.063 3.937 19 C -0.123 4.123 20 C -0.086 4.086 21 C -0.146 4.146 22 C -0.039 4.039 23 C -0.111 4.111 24 C 0.093 3.907 25 H 0.266 0.734 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.139 0.861 33 H 0.061 0.939 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.098 0.251 -9.488 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.125 4.125 3 Si 0.700 3.300 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.547 4.547 8 H 0.099 0.901 9 C -0.035 4.035 10 C -0.004 4.004 11 N -0.362 5.362 12 C 0.407 3.593 13 O -0.427 6.427 14 C -0.153 4.153 15 N -0.027 5.027 16 N -0.139 5.139 17 H 0.291 0.709 18 C -0.050 4.050 19 C -0.144 4.144 20 C -0.106 4.106 21 C -0.165 4.165 22 C -0.060 4.060 23 C -0.118 4.118 24 C -0.029 4.029 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.157 0.843 33 H 0.080 0.920 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 18.446 0.471 -9.356 20.688 hybrid contribution 0.926 1.049 -0.554 1.505 sum 19.372 1.520 -9.909 21.812 Atomic orbital electron populations 1.69887 1.06315 1.27274 1.49515 1.24979 0.94642 0.99064 0.93817 0.86892 0.80534 0.83710 0.78894 1.19942 1.21232 1.18698 1.20759 0.87381 0.94918 1.51646 0.90089 1.20908 0.97053 0.92998 0.92580 1.23180 0.86127 0.99606 0.91475 1.49746 1.09505 1.36880 1.40053 1.16137 0.80335 0.82103 0.80761 1.90745 1.66437 1.31608 1.53917 1.22899 0.92862 0.98203 1.01291 1.73121 1.18373 1.10083 1.01166 1.43137 1.07741 1.30588 1.32412 0.70932 1.19250 0.89924 0.95943 0.99918 1.19752 0.90272 1.02417 1.01964 1.20715 0.98258 0.94555 0.97100 1.20825 0.97661 1.00121 0.97920 1.20439 0.90713 0.96678 0.98126 1.19472 0.94138 0.99417 0.98785 1.23814 0.86503 0.90958 1.01669 0.92374 0.91522 0.89827 0.91665 0.85554 0.85271 0.85334 0.84330 0.92022 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 13.96 55.43 0.77 -25.11 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 20.35 27.42 -169.99 -4.66 15.69 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.26 -5.92 6.22 56.52 0.35 -5.57 16 7 C -0.51 -13.30 9.38 -34.44 -0.32 -13.62 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 9 C -0.02 -0.35 2.99 -91.39 -0.27 -0.63 16 10 C 0.12 2.39 8.19 -8.51 -0.07 2.32 16 11 N -0.63 -12.88 3.69 -186.71 -0.69 -13.57 16 12 C 0.62 12.60 8.06 -12.53 -0.10 12.50 16 13 O -0.55 -12.01 17.18 5.27 0.09 -11.92 16 14 C 0.02 0.34 7.29 -80.76 -0.59 -0.24 16 15 N -0.20 -3.25 10.67 34.46 0.37 -2.88 16 16 N -0.42 -5.25 6.85 32.34 0.22 -5.02 16 17 H 0.45 3.75 8.96 -190.49 -1.71 2.04 16 18 C 0.06 0.80 7.38 -84.21 -0.62 0.18 16 19 C -0.12 -1.17 10.03 -39.81 -0.40 -1.57 16 20 C -0.09 -0.75 9.96 -39.90 -0.40 -1.15 16 21 C -0.15 -1.48 9.98 -39.89 -0.40 -1.88 16 22 C -0.04 -0.53 9.87 -39.78 -0.39 -0.92 16 23 C -0.11 -1.71 6.34 -105.05 -0.67 -2.38 16 24 C 0.09 1.92 6.89 -8.65 -0.06 1.86 16 25 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 26 H 0.07 1.52 6.50 -51.93 -0.34 1.18 16 27 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 31 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.14 1.91 7.65 -52.49 -0.40 1.51 16 33 H 0.06 1.24 7.52 -51.93 -0.39 0.85 16 34 H 0.09 1.76 8.10 -51.93 -0.42 1.34 16 LS Contribution 297.53 15.07 4.48 4.48 Total: -1.00 -31.78 297.53 -8.78 -40.55 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -4.98 Total: 1.29 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -4.39 Total: -3.50 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.67 Total: -46.58 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.66 Total: 15.69 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.78 -8.78 -40.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598036167.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.883 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds