Wall clock time and date at job start Mon Mar 30 2020 04:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99832 * 2 1 4 4 H 1.48500 * 109.46962 * 270.00128 * 3 2 1 5 5 H 1.48491 * 109.47035 * 30.00063 * 3 2 1 6 6 H 1.48498 * 109.47207 * 150.00273 * 3 2 1 7 7 C 1.37879 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00056 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99504 * 179.97438 * 7 2 1 10 10 C 1.53497 * 114.19908 * 180.02562 * 9 7 2 11 11 N 1.47063 * 87.98457 * 139.65495 * 10 9 7 12 12 C 1.34781 * 136.05979 * 152.83745 * 11 10 9 13 13 O 1.21611 * 119.99707 * 0.02562 * 12 11 10 14 14 C 1.47387 * 120.00019 * 180.02562 * 12 11 10 15 15 N 1.31570 * 126.82623 * 0.02562 * 14 12 11 16 16 N 1.28387 * 111.96949 * 179.97438 * 15 14 12 17 17 H 0.97001 * 124.37064 * 179.97438 * 16 15 14 18 18 C 1.37045 * 111.25179 * 0.27216 * 16 15 14 19 19 C 1.39134 * 134.71857 * 180.46109 * 18 16 15 20 20 C 1.36683 * 119.78218 * 179.55281 * 19 18 16 21 21 C 1.38901 * 120.89626 * 359.72192 * 20 19 18 22 22 C 1.36718 * 120.52316 * 0.02562 * 21 20 19 23 23 C 1.39197 * 119.51309 * 359.97438 * 22 21 20 24 24 C 1.47063 * 87.88626 * 333.10195 * 11 10 9 25 25 H 0.97000 * 120.00116 * 359.97438 * 1 2 3 26 26 H 1.08991 * 113.28219 * 46.94002 * 9 7 2 27 27 H 1.08997 * 113.47208 * 24.87553 * 10 9 7 28 28 H 1.09001 * 113.46315 * 254.43428 * 10 9 7 29 29 H 1.07995 * 120.10503 * 359.27737 * 19 18 16 30 30 H 1.08001 * 119.55060 * 179.74407 * 20 19 18 31 31 H 1.07996 * 119.73616 * 179.97438 * 21 20 19 32 32 H 1.08002 * 120.24683 * 179.97438 * 22 21 20 33 33 H 1.08995 * 113.47563 * 141.68101 * 24 11 10 34 34 H 1.09005 * 113.46591 * 272.12137 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.1409 -2.5939 -0.0023 11 7 5.1410 -2.0869 -0.9538 12 6 6.4145 -2.3885 -1.2760 13 8 6.9894 -3.2927 -0.7008 14 6 7.1105 -1.6224 -2.3253 15 7 6.6210 -0.6240 -3.0287 16 7 7.4765 -0.1626 -3.8675 17 1 7.3049 0.5730 -4.4760 18 6 8.6612 -0.8479 -3.7965 19 6 9.8845 -0.7588 -4.4532 20 6 10.8948 -1.6194 -4.1263 21 6 10.7206 -2.5822 -3.1404 22 6 9.5305 -2.6882 -2.4759 23 6 8.4884 -1.8216 -2.7933 24 6 4.1423 -1.1015 -1.3946 25 1 -0.4850 0.8400 0.0004 26 1 3.9426 -0.5105 0.7304 27 1 3.4915 -3.3615 -0.4231 28 1 4.5639 -2.8804 0.9606 29 1 10.0338 -0.0150 -5.2218 30 1 11.8415 -1.5497 -4.6414 31 1 11.5314 -3.2529 -2.8974 32 1 9.3997 -3.4387 -1.7104 33 1 4.5664 -0.1215 -1.6133 34 1 3.4931 -1.4674 -2.1901 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598036167.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:07 Heat of formation + Delta-G solvation = 72.824995 kcal Electronic energy + Delta-G solvation = -19762.383758 eV Core-core repulsion = 16662.150532 eV Total energy + Delta-G solvation = -3100.233226 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.53517 -41.11194 -38.83771 -38.69279 -34.69367 -33.66163 -31.72740 -31.23496 -30.53149 -27.52626 -26.78534 -24.82845 -24.03983 -23.27550 -21.68767 -19.96189 -19.22453 -19.06761 -18.51562 -17.37952 -17.07959 -16.85477 -16.51978 -16.17781 -15.75990 -15.15902 -15.04605 -14.84790 -14.69242 -14.06770 -13.55821 -13.42992 -13.19099 -12.91430 -12.77063 -12.60651 -12.17518 -12.05300 -11.82828 -11.62885 -11.26943 -11.24450 -11.04379 -10.68099 -9.81618 -9.74841 -9.10897 -8.28560 -6.35740 -0.25140 0.34224 0.81654 1.39197 1.41716 1.50530 1.59297 1.91716 2.16352 2.36756 2.79157 3.00981 3.11651 3.45259 3.59055 3.96350 4.11129 4.13217 4.26364 4.39150 4.45238 4.47093 4.60279 4.69336 4.76086 4.80334 4.91285 5.04649 5.19786 5.35926 5.45796 5.55748 5.59458 5.83122 6.08772 6.27726 6.64664 6.66060 6.71948 7.04090 7.31450 8.86846 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.031315 B = 0.004687 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.931397 B = 5972.690839 C = 6636.691033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.260 1.260 5 H -0.286 1.286 6 H -0.249 1.249 7 C -0.510 4.510 8 H 0.047 0.953 9 C -0.019 4.019 10 C 0.119 3.881 11 N -0.634 5.634 12 C 0.618 3.382 13 O -0.575 6.575 14 C -0.025 4.025 15 N -0.208 5.208 16 N -0.397 5.397 17 H 0.463 0.537 18 C 0.055 3.945 19 C -0.111 4.111 20 C -0.079 4.079 21 C -0.128 4.128 22 C -0.076 4.076 23 C -0.137 4.137 24 C 0.108 3.892 25 H 0.269 0.731 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.167 0.833 30 H 0.174 0.826 31 H 0.157 0.843 32 H 0.119 0.881 33 H 0.071 0.929 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.726 1.929 -11.641 25.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.173 4.173 3 Si 0.757 3.243 4 H -0.185 1.185 5 H -0.212 1.212 6 H -0.173 1.173 7 C -0.548 4.548 8 H 0.065 0.935 9 C -0.039 4.039 10 C -0.002 4.002 11 N -0.366 5.366 12 C 0.407 3.593 13 O -0.454 6.454 14 C -0.194 4.194 15 N -0.040 5.040 16 N -0.120 5.120 17 H 0.312 0.688 18 C -0.058 4.058 19 C -0.132 4.132 20 C -0.099 4.099 21 C -0.147 4.147 22 C -0.096 4.096 23 C -0.145 4.145 24 C -0.014 4.014 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.184 0.816 30 H 0.191 0.809 31 H 0.174 0.826 32 H 0.137 0.863 33 H 0.089 0.911 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 22.098 2.140 -11.521 25.013 hybrid contribution -0.075 0.452 0.030 0.459 sum 22.023 2.593 -11.491 24.975 Atomic orbital electron populations 1.70021 1.08150 1.28324 1.51518 1.25762 0.95274 1.02718 0.93538 0.85919 0.79572 0.79135 0.79663 1.18500 1.21233 1.17319 1.20899 0.89344 0.93686 1.50825 0.93461 1.20790 0.94668 0.94491 0.93931 1.23088 0.86304 0.98594 0.92230 1.49702 1.09760 1.36970 1.40192 1.16516 0.79874 0.81961 0.80950 1.90707 1.66822 1.32805 1.55055 1.22533 0.94476 0.99936 1.02447 1.72967 1.19531 1.09847 1.01635 1.43166 1.07285 1.30270 1.31278 0.68776 1.19551 0.90876 0.95427 0.99933 1.20300 0.88526 1.02756 1.01573 1.21259 0.99707 0.92939 0.96025 1.21235 0.96697 1.00086 0.96668 1.20475 0.92160 0.97355 0.99658 1.19702 0.93511 1.01155 1.00098 1.23518 0.86298 0.91530 1.00091 0.92231 0.91393 0.89713 0.90833 0.81583 0.80909 0.82556 0.86266 0.91084 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.95 13.96 21.45 0.30 -55.65 16 2 C 0.03 1.43 5.47 84.66 0.46 1.89 16 3 Si 0.93 41.68 27.42 68.60 1.88 43.56 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.25 -10.53 6.22 99.48 0.62 -9.91 16 7 C -0.51 -27.32 9.38 25.60 0.24 -27.08 16 8 H 0.05 2.79 8.06 -2.92 -0.02 2.76 16 9 C -0.02 -0.87 2.99 -11.29 -0.03 -0.90 16 10 C 0.12 4.95 8.19 83.18 0.68 5.63 16 11 N -0.63 -26.27 3.69 -862.87 -3.19 -29.45 16 12 C 0.62 25.74 8.06 86.65 0.70 26.44 16 13 O -0.57 -26.05 17.18 -4.07 -0.07 -26.12 16 14 C -0.02 -0.89 7.29 43.86 0.32 -0.57 16 15 N -0.21 -6.62 10.67 -44.89 -0.48 -7.09 16 16 N -0.40 -9.00 6.85 -51.59 -0.35 -9.36 16 17 H 0.46 6.36 8.96 -220.03 -1.97 4.39 16 18 C 0.06 1.25 7.38 39.19 0.29 1.54 16 19 C -0.11 -1.56 10.03 22.12 0.22 -1.34 16 20 C -0.08 -0.97 9.96 22.06 0.22 -0.75 16 21 C -0.13 -2.17 9.98 22.07 0.22 -1.95 16 22 C -0.08 -2.00 9.87 22.14 0.22 -1.78 16 23 C -0.14 -4.17 6.34 -20.14 -0.13 -4.30 16 24 C 0.11 4.46 6.89 83.09 0.57 5.03 16 25 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 26 H 0.07 3.06 6.50 -2.39 -0.02 3.05 16 27 H 0.08 3.45 8.10 -2.39 -0.02 3.43 16 28 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 29 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 30 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 31 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 32 H 0.12 3.46 7.65 -2.91 -0.02 3.44 16 33 H 0.07 2.79 7.52 -2.39 -0.02 2.77 16 34 H 0.08 3.43 8.10 -2.38 -0.02 3.41 16 Total: -1.00 -71.95 297.53 1.16 -70.79 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -0.92 Total: 11.46 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 3.98 Total: 1.86 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -3.72 Total: -101.55 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.07 Total: -26.12 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.88 Total: 43.56 kcal Total: -71.95 1.16 -70.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598036167.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.618 kcal (2) G-P(sol) polarization free energy of solvation -71.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds