Wall clock time and date at job start Mon Mar 30 2020 04:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.67191 * 2 1 4 4 C 1.53404 * 109.67446 * 239.49953 * 2 1 3 5 5 N 1.46856 * 108.77509 * 190.84320 * 4 2 1 6 6 C 1.34776 * 120.38001 * 237.61911 * 5 4 2 7 7 O 1.21278 * 119.99992 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99821 * 180.02562 * 6 5 4 9 9 S 1.80998 * 109.46970 * 180.02562 * 8 6 5 10 10 C 1.76199 * 100.00052 * 179.97438 * 9 8 6 11 11 H 1.07990 * 119.99886 * 359.97438 * 10 9 8 12 12 C 1.38798 * 119.99752 * 180.02562 * 10 9 8 13 13 N 1.31633 * 120.00370 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99801 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46845 * 269.99984 * 14 12 10 16 16 H 1.48503 * 109.47399 * 29.99474 * 14 12 10 17 17 H 1.48498 * 109.47295 * 150.00081 * 14 12 10 18 18 C 1.46854 * 119.23799 * 57.89318 * 5 4 2 19 19 C 1.53888 * 108.51624 * 302.07443 * 18 5 4 20 20 H 1.08993 * 109.62530 * 169.31067 * 19 18 5 21 21 C 1.52997 * 109.80790 * 289.86568 * 19 18 5 22 22 C 1.51295 * 109.67311 * 120.53387 * 2 1 3 23 23 O 1.20756 * 120.80507 * 352.66951 * 22 2 1 24 24 H 1.09000 * 109.47383 * 180.50067 * 1 2 3 25 25 H 1.08995 * 109.47141 * 300.50101 * 1 2 3 26 26 H 1.08997 * 109.46897 * 60.50199 * 1 2 3 27 27 H 1.08995 * 109.58538 * 71.05052 * 4 2 1 28 28 H 1.09007 * 109.69865 * 310.70080 * 4 2 1 29 29 H 1.08993 * 109.47027 * 60.00415 * 8 6 5 30 30 H 1.09001 * 109.47164 * 300.00041 * 8 6 5 31 31 H 0.97000 * 119.99520 * 359.97438 * 13 12 10 32 32 H 1.09006 * 109.58772 * 61.89656 * 18 5 4 33 33 H 1.09004 * 109.58716 * 182.31509 * 18 5 4 34 34 H 1.09005 * 109.47397 * 178.98003 * 21 19 18 35 35 H 1.09007 * 109.46975 * 298.98179 * 21 19 18 36 36 H 1.09003 * 109.47791 * 58.97861 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0465 -0.7331 -1.2446 5 7 3.4915 -0.9511 -1.0992 6 6 4.3492 -0.4726 -2.0221 7 8 3.9291 0.1423 -2.9793 8 6 5.8304 -0.7017 -1.8646 9 16 6.7092 0.0565 -3.2535 10 6 8.3688 -0.3515 -2.8249 11 1 8.5717 -0.9121 -1.9245 12 6 9.4154 0.0487 -3.6439 13 7 9.1682 0.7326 -4.7412 14 14 11.1749 -0.3844 -3.1899 15 1 11.7490 0.6958 -2.3479 16 1 11.1908 -1.6625 -2.4339 17 1 11.9836 -0.5306 -4.4267 18 6 3.9906 -1.7015 0.0603 19 6 3.5247 -0.9880 1.3417 20 1 3.7188 -1.6234 2.2057 21 6 4.2729 0.3373 1.4984 22 6 2.0393 -0.7238 1.2271 23 8 1.2789 -1.0816 2.0942 24 1 -0.3634 -1.0276 0.0090 25 1 -0.3633 0.5216 0.8854 26 1 -0.3633 0.5060 -0.8944 27 1 1.8555 -0.1279 -2.1307 28 1 1.5400 -1.6935 -1.3420 29 1 6.0325 -1.7726 -1.8474 30 1 6.1703 -0.2527 -0.9314 31 1 8.2545 0.9565 -4.9775 32 1 3.5922 -2.7159 0.0380 33 1 5.0798 -1.7339 0.0332 34 1 3.9258 0.8464 2.3976 35 1 5.3424 0.1432 1.5806 36 1 4.0837 0.9666 0.6287 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598115064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:35 Heat of formation + Delta-G solvation = -85.772823 kcal Electronic energy + Delta-G solvation = -18956.898193 eV Core-core repulsion = 15952.938849 eV Total energy + Delta-G solvation = -3003.959343 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.87770 -39.12363 -36.52494 -34.17276 -32.66437 -32.56756 -29.77026 -27.17946 -26.29635 -24.90372 -24.15320 -22.41519 -20.10322 -18.61904 -18.16266 -17.06697 -16.45019 -16.09101 -15.68929 -15.21950 -15.02722 -14.51172 -14.15515 -13.88869 -13.60941 -13.28464 -12.79233 -12.75319 -12.50362 -12.45219 -12.35034 -12.16095 -12.01662 -11.74214 -11.65787 -11.51976 -11.24239 -10.94389 -10.22372 -9.74337 -9.61693 -9.48923 -9.05711 -8.81309 -8.27238 -6.72902 -6.66375 -4.05161 1.64101 2.65201 2.82533 3.25232 3.34751 3.37110 3.52869 3.67623 4.18561 4.34050 4.36319 4.45913 4.67100 4.79007 4.83787 5.00934 5.17741 5.18339 5.25374 5.27511 5.36337 5.38094 5.51392 5.57814 5.59374 5.66108 5.67575 5.74257 5.86770 5.89090 5.98032 6.36156 7.16129 7.29252 7.87502 8.30920 8.45823 9.22485 10.77556 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.035087 B = 0.004392 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.835999 B = 6374.342233 C = 6909.391123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.156 4.156 3 H 0.110 0.890 4 C 0.124 3.876 5 N -0.622 5.622 6 C 0.536 3.464 7 O -0.512 6.512 8 C -0.130 4.130 9 S -0.116 6.116 10 C -0.608 4.608 11 H 0.066 0.934 12 C 0.036 3.964 13 N -0.884 5.884 14 Si 1.086 2.914 15 H -0.284 1.284 16 H -0.287 1.287 17 H -0.280 1.280 18 C 0.116 3.884 19 C -0.155 4.155 20 H 0.105 0.895 21 C -0.143 4.143 22 C 0.371 3.629 23 O -0.452 6.452 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.106 0.894 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.278 0.722 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.911 -4.006 12.427 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.176 4.176 3 H 0.128 0.872 4 C 0.001 3.999 5 N -0.358 5.358 6 C 0.324 3.676 7 O -0.386 6.386 8 C -0.281 4.281 9 S 0.110 5.890 10 C -0.756 4.756 11 H 0.084 0.916 12 C -0.174 4.174 13 N -0.518 5.518 14 Si 0.912 3.088 15 H -0.210 1.210 16 H -0.213 1.213 17 H -0.205 1.205 18 C -0.008 4.008 19 C -0.175 4.175 20 H 0.124 0.876 21 C -0.200 4.200 22 C 0.246 3.754 23 O -0.324 6.324 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.125 0.875 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.374 -3.123 10.934 16.806 hybrid contribution -0.901 -0.970 1.839 2.266 sum -13.276 -4.093 12.773 18.872 Atomic orbital electron populations 1.21602 0.92373 1.02852 1.02633 1.22287 0.98174 1.01975 0.95171 0.87234 1.21563 0.80054 1.00646 0.97672 1.48088 1.06396 1.56743 1.24551 1.20353 0.88060 0.77656 0.81503 1.90702 1.78651 1.39215 1.29998 1.23368 0.93459 1.05289 1.06001 1.84855 1.03171 1.72647 1.28281 1.23709 0.91338 1.45538 1.14984 0.91555 1.26044 1.04782 0.93611 0.92998 1.70777 1.24158 1.33980 1.22866 0.83298 0.73307 0.76097 0.76069 1.21039 1.21272 1.20496 1.21903 1.01513 0.94489 0.82882 1.22460 0.94393 1.00324 1.00302 0.87637 1.21744 1.00759 0.94946 1.02556 1.24773 0.90495 0.74531 0.85608 1.90382 1.60040 1.41803 1.40182 0.92057 0.91723 0.91464 0.87533 0.90993 0.88885 0.88800 0.90951 0.90541 0.87836 0.92060 0.90746 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.56 37.16 0.32 -0.87 16 2 C -0.16 -1.53 2.87 -91.27 -0.26 -1.79 16 3 H 0.11 1.08 7.73 -51.93 -0.40 0.67 16 4 C 0.12 1.36 5.76 -3.64 -0.02 1.34 16 5 N -0.62 -7.91 2.55 -172.32 -0.44 -8.35 16 6 C 0.54 9.34 7.71 -10.98 -0.08 9.25 16 7 O -0.51 -10.85 15.24 5.56 0.08 -10.76 16 8 C -0.13 -2.47 4.48 36.01 0.16 -2.31 16 9 S -0.12 -3.01 19.60 -107.50 -2.11 -5.12 16 10 C -0.61 -16.97 9.50 30.94 0.29 -16.67 16 11 H 0.07 1.77 7.80 -52.49 -0.41 1.36 16 12 C 0.04 1.03 5.49 -17.43 -0.10 0.93 16 13 N -0.88 -26.99 13.67 55.49 0.76 -26.23 16 14 Si 1.09 24.40 29.92 -169.99 -5.09 19.31 16 15 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 16 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 18 C 0.12 1.15 5.78 -3.39 -0.02 1.13 16 19 C -0.15 -1.44 3.20 -91.02 -0.29 -1.73 16 20 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 21 C -0.14 -1.35 9.04 37.16 0.34 -1.01 16 22 C 0.37 3.96 5.90 -28.45 -0.17 3.80 16 23 O -0.45 -5.94 16.88 6.00 0.10 -5.84 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.11 1.31 6.96 -51.93 -0.36 0.95 16 28 H 0.07 0.69 8.12 -51.92 -0.42 0.27 16 29 H 0.09 1.64 7.85 -51.92 -0.41 1.23 16 30 H 0.09 1.62 7.77 -51.91 -0.40 1.22 16 31 H 0.28 8.67 7.12 -40.82 -0.29 8.38 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.10 1.01 5.84 -51.93 -0.30 0.71 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.72 7.30 -51.93 -0.38 0.34 16 LS Contribution 310.89 15.07 4.69 4.69 Total: -1.00 -33.95 310.89 -6.97 -40.92 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.13 Total: -0.69 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 0.17 Total: -7.93 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.32 Total: -34.57 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.19 Total: -16.60 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.09 Total: 19.31 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -2.11 Total: -5.12 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.95 -6.97 -40.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598115064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.853 kcal (2) G-P(sol) polarization free energy of solvation -33.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds