Wall clock time and date at job start Mon Mar 30 2020 04:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.67191 * 2 1 4 4 C 1.53404 * 109.67446 * 239.49953 * 2 1 3 5 5 N 1.46856 * 108.77509 * 190.84320 * 4 2 1 6 6 C 1.34776 * 120.38001 * 237.61911 * 5 4 2 7 7 O 1.21278 * 119.99992 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99821 * 180.02562 * 6 5 4 9 9 S 1.80998 * 109.46970 * 180.02562 * 8 6 5 10 10 C 1.76199 * 100.00052 * 179.97438 * 9 8 6 11 11 H 1.07990 * 119.99886 * 359.97438 * 10 9 8 12 12 C 1.38798 * 119.99752 * 180.02562 * 10 9 8 13 13 N 1.31633 * 120.00370 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99801 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46845 * 269.99984 * 14 12 10 16 16 H 1.48503 * 109.47399 * 29.99474 * 14 12 10 17 17 H 1.48498 * 109.47295 * 150.00081 * 14 12 10 18 18 C 1.46854 * 119.23799 * 57.89318 * 5 4 2 19 19 C 1.53888 * 108.51624 * 302.07443 * 18 5 4 20 20 H 1.08993 * 109.62530 * 169.31067 * 19 18 5 21 21 C 1.52997 * 109.80790 * 289.86568 * 19 18 5 22 22 C 1.51295 * 109.67311 * 120.53387 * 2 1 3 23 23 O 1.20756 * 120.80507 * 352.66951 * 22 2 1 24 24 H 1.09000 * 109.47383 * 180.50067 * 1 2 3 25 25 H 1.08995 * 109.47141 * 300.50101 * 1 2 3 26 26 H 1.08997 * 109.46897 * 60.50199 * 1 2 3 27 27 H 1.08995 * 109.58538 * 71.05052 * 4 2 1 28 28 H 1.09007 * 109.69865 * 310.70080 * 4 2 1 29 29 H 1.08993 * 109.47027 * 60.00415 * 8 6 5 30 30 H 1.09001 * 109.47164 * 300.00041 * 8 6 5 31 31 H 0.97000 * 119.99520 * 359.97438 * 13 12 10 32 32 H 1.09006 * 109.58772 * 61.89656 * 18 5 4 33 33 H 1.09004 * 109.58716 * 182.31509 * 18 5 4 34 34 H 1.09005 * 109.47397 * 178.98003 * 21 19 18 35 35 H 1.09007 * 109.46975 * 298.98179 * 21 19 18 36 36 H 1.09003 * 109.47791 * 58.97861 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0465 -0.7331 -1.2446 5 7 3.4915 -0.9511 -1.0992 6 6 4.3492 -0.4726 -2.0221 7 8 3.9291 0.1423 -2.9793 8 6 5.8304 -0.7017 -1.8646 9 16 6.7092 0.0565 -3.2535 10 6 8.3688 -0.3515 -2.8249 11 1 8.5717 -0.9121 -1.9245 12 6 9.4154 0.0487 -3.6439 13 7 9.1682 0.7326 -4.7412 14 14 11.1749 -0.3844 -3.1899 15 1 11.7490 0.6958 -2.3479 16 1 11.1908 -1.6625 -2.4339 17 1 11.9836 -0.5306 -4.4267 18 6 3.9906 -1.7015 0.0603 19 6 3.5247 -0.9880 1.3417 20 1 3.7188 -1.6234 2.2057 21 6 4.2729 0.3373 1.4984 22 6 2.0393 -0.7238 1.2271 23 8 1.2789 -1.0816 2.0942 24 1 -0.3634 -1.0276 0.0090 25 1 -0.3633 0.5216 0.8854 26 1 -0.3633 0.5060 -0.8944 27 1 1.8555 -0.1279 -2.1307 28 1 1.5400 -1.6935 -1.3420 29 1 6.0325 -1.7726 -1.8474 30 1 6.1703 -0.2527 -0.9314 31 1 8.2545 0.9565 -4.9775 32 1 3.5922 -2.7159 0.0380 33 1 5.0798 -1.7339 0.0332 34 1 3.9258 0.8464 2.3976 35 1 5.3424 0.1432 1.5806 36 1 4.0837 0.9666 0.6287 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598115064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:35 Heat of formation + Delta-G solvation = -107.394361 kcal Electronic energy + Delta-G solvation = -18957.835773 eV Core-core repulsion = 15952.938849 eV Total energy + Delta-G solvation = -3004.896924 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.87400 -40.30625 -37.64427 -34.99706 -34.72214 -33.68155 -31.14691 -28.04074 -27.35984 -26.87422 -25.15572 -23.23578 -21.30950 -20.35441 -19.31854 -18.35531 -17.58505 -17.07441 -16.81250 -16.37860 -16.16649 -15.83877 -15.67383 -15.26108 -14.91403 -14.48595 -14.22210 -13.95437 -13.74221 -13.58369 -13.44077 -13.25314 -13.10539 -12.73088 -12.64691 -12.56727 -12.32646 -12.05872 -11.92495 -11.51762 -11.08142 -11.04599 -10.46225 -10.27125 -9.90202 -8.89319 -8.84202 -6.24645 0.77139 1.17064 1.46600 1.53839 1.63302 1.80778 1.91604 2.35675 2.86378 3.05450 3.09087 3.44227 3.54296 3.62747 3.78098 3.90880 4.02270 4.16696 4.22314 4.33000 4.41734 4.47906 4.52085 4.61092 4.72018 4.81671 4.84022 4.89570 4.95921 5.15238 5.20550 5.37665 5.68038 6.07569 6.18213 6.34856 6.99411 7.09245 8.54277 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.035087 B = 0.004392 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.835999 B = 6374.342233 C = 6909.391123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.152 4.152 3 H 0.109 0.891 4 C 0.123 3.877 5 N -0.607 5.607 6 C 0.539 3.461 7 O -0.559 6.559 8 C -0.107 4.107 9 S -0.196 6.196 10 C -0.610 4.610 11 H 0.077 0.923 12 C -0.018 4.018 13 N -0.915 5.915 14 Si 1.137 2.863 15 H -0.268 1.268 16 H -0.261 1.261 17 H -0.282 1.282 18 C 0.109 3.891 19 C -0.147 4.147 20 H 0.125 0.875 21 C -0.143 4.143 22 C 0.376 3.624 23 O -0.475 6.475 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.261 0.739 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.778 -5.490 14.717 20.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.172 4.172 3 H 0.126 0.874 4 C 0.001 3.999 5 N -0.341 5.341 6 C 0.327 3.673 7 O -0.437 6.437 8 C -0.258 4.258 9 S 0.031 5.969 10 C -0.758 4.758 11 H 0.095 0.905 12 C -0.221 4.221 13 N -0.551 5.551 14 Si 0.955 3.045 15 H -0.194 1.194 16 H -0.185 1.185 17 H -0.207 1.207 18 C -0.013 4.013 19 C -0.167 4.167 20 H 0.143 0.857 21 C -0.200 4.200 22 C 0.252 3.748 23 O -0.349 6.349 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.283 -4.631 13.276 18.670 hybrid contribution -1.088 -0.539 1.225 1.725 sum -13.371 -5.170 14.502 20.391 Atomic orbital electron populations 1.21589 0.91367 1.03114 1.03098 1.22252 0.98998 1.01655 0.94264 0.87350 1.21693 0.78878 1.01663 0.97689 1.48027 1.06636 1.55372 1.24042 1.20060 0.87799 0.77641 0.81832 1.90693 1.79102 1.41668 1.32218 1.23267 0.93819 1.05617 1.03100 1.85105 1.04319 1.74351 1.33170 1.24039 0.91926 1.44808 1.15025 0.90492 1.27759 1.09391 0.92688 0.92280 1.70896 1.23088 1.36382 1.24709 0.82704 0.68181 0.77387 0.76219 1.19371 1.18543 1.20730 1.22213 1.02083 0.95308 0.81710 1.22438 0.93161 1.00477 1.00592 0.85680 1.21751 1.01274 0.94830 1.02174 1.24970 0.90982 0.73663 0.85195 1.90387 1.60732 1.42799 1.40967 0.91873 0.91910 0.90399 0.89049 0.88911 0.86991 0.86734 0.92814 0.88047 0.87235 0.91264 0.90047 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.56 71.98 0.62 -1.48 16 2 C -0.15 -2.72 2.87 -11.22 -0.03 -2.75 16 3 H 0.11 2.00 7.73 -2.39 -0.02 1.98 16 4 C 0.12 2.50 5.76 86.45 0.50 3.00 16 5 N -0.61 -14.21 2.55 -817.48 -2.09 -16.30 16 6 C 0.54 18.31 7.71 87.66 0.68 18.98 16 7 O -0.56 -24.07 15.24 -3.02 -0.05 -24.11 16 8 C -0.11 -3.91 4.48 71.24 0.32 -3.59 16 9 S -0.20 -10.37 19.60 -56.49 -1.11 -11.48 16 10 C -0.61 -33.88 9.50 67.95 0.65 -33.24 16 11 H 0.08 3.97 7.80 -2.92 -0.02 3.95 16 12 C -0.02 -1.02 5.49 84.86 0.47 -0.55 16 13 N -0.92 -57.08 13.67 21.65 0.30 -56.78 16 14 Si 1.14 47.99 29.92 68.60 2.05 50.04 16 15 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 16 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 17 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 18 C 0.11 1.79 5.78 86.61 0.50 2.29 16 19 C -0.15 -2.27 3.20 -11.05 -0.04 -2.30 16 20 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 21 C -0.14 -2.35 9.04 71.98 0.65 -1.70 16 22 C 0.38 7.10 5.90 29.48 0.17 7.27 16 23 O -0.47 -11.41 16.88 -1.44 -0.02 -11.43 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 1.02 8.08 -2.39 -0.02 1.00 16 26 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 2.21 6.96 -2.39 -0.02 2.19 16 28 H 0.09 1.55 8.12 -2.38 -0.02 1.53 16 29 H 0.11 3.68 7.85 -2.40 -0.02 3.67 16 30 H 0.11 3.71 7.77 -2.40 -0.02 3.70 16 31 H 0.26 16.92 7.12 -92.71 -0.66 16.26 16 32 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.11 1.72 5.84 -2.39 -0.01 1.71 16 34 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.05 0.99 7.30 -2.39 -0.02 0.97 16 Total: -1.00 -75.14 310.89 4.74 -70.40 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 1.18 Total: 13.72 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 4.48 Total: -14.06 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -1.79 Total: -73.08 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -0.07 Total: -35.54 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.05 Total: 50.04 kcal Atomic # 16 Polarization: -10.37 SS G_CDS: -1.11 Total: -11.48 kcal Total: -75.14 4.74 -70.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598115064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.997 kcal (2) G-P(sol) polarization free energy of solvation -75.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds