Wall clock time and date at job start Mon Mar 30 2020 04:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50032 * 110.11157 * 2 1 4 4 O 1.45643 * 105.15816 * 279.71696 * 3 2 1 5 5 C 1.46331 * 108.84739 * 352.67866 * 4 3 2 6 6 C 1.50575 * 102.45801 * 334.43833 * 5 4 3 7 7 H 1.08999 * 109.73691 * 291.01392 * 6 5 4 8 8 C 1.49961 * 127.25882 * 154.06663 * 6 5 4 9 9 N 1.49352 * 104.71522 * 216.67682 * 8 6 5 10 10 C 1.34769 * 126.15012 * 187.70830 * 9 8 6 11 11 O 1.21288 * 120.00106 * 179.97438 * 10 9 8 12 12 C 1.50696 * 119.99967 * 359.97438 * 10 9 8 13 13 S 1.81002 * 109.47330 * 179.97438 * 12 10 9 14 14 C 1.76195 * 100.00363 * 180.02562 * 13 12 10 15 15 H 1.07994 * 119.99739 * 359.97438 * 14 13 12 16 16 C 1.38802 * 119.99998 * 180.02562 * 14 13 12 17 17 N 1.31630 * 120.00146 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99818 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46841 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47057 * 119.99838 * 18 16 14 21 21 H 1.48500 * 109.46894 * 240.00102 * 18 16 14 22 22 C 1.49832 * 107.70255 * 7.68833 * 9 8 6 23 23 H 1.09000 * 109.47032 * 58.98439 * 1 2 3 24 24 H 1.08997 * 109.47286 * 178.98584 * 1 2 3 25 25 H 1.09004 * 109.47283 * 298.99122 * 1 2 3 26 26 H 1.09002 * 110.32173 * 38.66843 * 3 2 1 27 27 H 1.08998 * 110.32384 * 160.77096 * 3 2 1 28 28 H 1.08999 * 110.75017 * 216.21897 * 5 4 3 29 29 H 1.09005 * 111.03167 * 92.78142 * 5 4 3 30 30 H 1.09003 * 110.38937 * 335.48217 * 8 6 5 31 31 H 1.08992 * 110.39204 * 97.75190 * 8 6 5 32 32 H 1.08999 * 109.47429 * 299.99878 * 12 10 9 33 33 H 1.08997 * 109.47442 * 60.00259 * 12 10 9 34 34 H 0.97003 * 119.99703 * 180.02562 * 17 16 14 35 35 H 1.08998 * 110.87316 * 267.27491 * 22 9 8 36 36 H 1.08995 * 110.87471 * 143.58438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0458 1.4088 0.0000 4 8 1.9540 1.8480 -1.3856 5 6 1.5747 0.7067 -2.2191 6 6 2.0741 -0.4637 -1.4141 7 1 3.1641 -0.4697 -1.4105 8 6 1.5521 -1.8693 -1.4356 9 7 1.6542 -2.3337 -0.0198 10 6 1.4359 -3.5875 0.4234 11 8 1.5513 -3.8424 1.6035 12 6 1.0482 -4.6730 -0.5475 13 16 0.8279 -6.2314 0.3463 14 6 0.3927 -7.2925 -0.9913 15 1 0.3338 -6.8992 -1.9953 16 6 0.1245 -8.6336 -0.7543 17 7 0.1959 -9.1129 0.4695 18 14 -0.3376 -9.7584 -2.1724 19 1 -0.3483 -8.9809 -3.4376 20 1 0.6546 -10.8585 -2.2752 21 1 -1.6870 -10.3296 -1.9316 22 6 2.0435 -1.1550 0.8193 23 1 -0.3633 0.5295 -0.8807 24 1 -0.3634 -1.0275 -0.0182 25 1 -0.3634 0.4981 0.8989 26 1 1.4266 2.0387 0.6387 27 1 3.0823 1.4325 0.3366 28 1 2.0741 0.7524 -3.1869 29 1 0.4931 0.6566 -2.3452 30 1 0.5134 -1.8837 -1.7659 31 1 2.1654 -2.4923 -2.0865 32 1 0.1153 -4.4022 -1.0417 33 1 1.8339 -4.7906 -1.2937 34 1 0.0088 -10.0502 0.6350 35 1 3.1262 -1.0996 0.9327 36 1 1.5515 -1.1907 1.7913 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598234479.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:26 Heat of formation + Delta-G solvation = -48.116310 kcal Electronic energy + Delta-G solvation = -18880.278389 eV Core-core repulsion = 15877.951955 eV Total energy + Delta-G solvation = -3002.326435 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.69520 -38.74181 -36.34625 -32.52469 -32.44608 -31.10331 -29.45653 -27.47466 -26.82912 -25.67817 -25.24717 -21.09525 -19.71184 -19.39860 -17.66033 -17.22935 -16.51122 -16.13407 -15.65341 -15.20038 -14.82431 -14.68668 -14.65997 -13.96139 -13.71097 -13.17555 -12.87657 -12.61433 -12.48148 -12.42112 -12.25169 -11.92774 -11.79671 -11.43836 -11.08839 -11.04069 -10.95926 -10.77733 -10.48759 -9.92449 -9.83081 -9.43782 -9.09479 -8.64600 -8.25798 -6.52964 -6.23896 -3.94792 2.71783 3.00425 3.20054 3.21843 3.26904 3.29406 3.44725 3.55439 4.18037 4.24712 4.51192 4.69899 4.73278 4.81157 4.92007 5.03841 5.11488 5.15171 5.24576 5.33562 5.43035 5.44738 5.49360 5.59501 5.62266 5.65610 5.70599 5.78135 5.89086 6.00468 6.09706 6.17245 6.34135 7.55917 7.58227 8.33225 8.49252 9.21554 10.83604 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.039781 B = 0.003942 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.676857 B = 7102.159064 C = 7562.514564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.080 3.920 4 O -0.386 6.386 5 C 0.072 3.928 6 C -0.156 4.156 7 H 0.094 0.906 8 C 0.129 3.871 9 N -0.632 5.632 10 C 0.551 3.449 11 O -0.514 6.514 12 C -0.146 4.146 13 S -0.061 6.061 14 C -0.535 4.535 15 H 0.073 0.927 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.140 3.860 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.268 0.732 35 H 0.072 0.928 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.567 20.316 -5.213 21.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C 0.004 3.996 4 O -0.306 6.306 5 C -0.004 4.004 6 C -0.175 4.175 7 H 0.112 0.888 8 C 0.006 3.994 9 N -0.371 5.371 10 C 0.339 3.661 11 O -0.388 6.388 12 C -0.297 4.297 13 S 0.166 5.834 14 C -0.683 4.683 15 H 0.091 0.909 16 C -0.135 4.135 17 N -0.502 5.502 18 Si 0.745 3.255 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.205 1.205 22 C 0.018 3.982 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.738 19.864 -3.371 20.334 hybrid contribution -0.412 -0.693 -2.232 2.373 sum 2.326 19.171 -5.603 20.108 Atomic orbital electron populations 1.22045 0.92414 1.03344 1.02554 1.22281 0.98233 0.95282 0.97461 1.22126 1.01105 0.92348 0.84067 1.89428 1.91151 1.32885 1.17092 1.22541 1.00214 0.83703 0.93930 1.22920 1.02412 0.95340 0.96854 0.88795 1.20992 1.01716 0.92852 0.83795 1.49860 1.71391 1.08220 1.07595 1.20039 0.75858 0.80937 0.89221 1.90720 1.50273 1.80450 1.17349 1.23507 1.04025 1.00241 1.01899 1.85414 1.90258 0.95542 1.12217 1.22894 1.54351 0.96240 0.94837 0.90876 1.24994 0.94838 0.97181 0.96536 1.70029 1.45947 1.14891 1.19382 0.86114 0.78248 0.79963 0.81156 1.19607 1.20535 1.20542 1.21234 0.99643 0.82641 0.94664 0.91633 0.91279 0.91793 0.89929 0.90964 0.88976 0.90752 0.90735 0.90262 0.89314 0.89294 0.92211 0.91017 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 7.86 37.15 0.29 -1.05 16 2 C -0.13 -1.18 1.35 -154.16 -0.21 -1.39 16 3 C 0.08 0.65 7.05 35.68 0.25 0.91 16 4 O -0.39 -3.75 11.62 -35.23 -0.41 -4.16 16 5 C 0.07 0.56 7.18 35.94 0.26 0.82 16 6 C -0.16 -1.34 2.80 -90.33 -0.25 -1.59 16 7 H 0.09 0.81 8.13 -51.93 -0.42 0.39 16 8 C 0.13 1.33 5.70 -3.97 -0.02 1.31 16 9 N -0.63 -8.83 2.75 -171.71 -0.47 -9.30 16 10 C 0.55 10.48 7.90 -10.99 -0.09 10.40 16 11 O -0.51 -11.84 16.20 5.55 0.09 -11.75 16 12 C -0.15 -2.97 5.40 36.00 0.19 -2.77 16 13 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 14 C -0.53 -15.17 9.50 30.94 0.29 -14.88 16 15 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 16 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 17 N -0.87 -26.07 13.22 55.49 0.73 -25.33 16 18 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C 0.14 1.62 6.20 -3.37 -0.02 1.60 16 23 H 0.06 0.54 5.75 -51.93 -0.30 0.24 16 24 H 0.07 0.76 6.47 -51.93 -0.34 0.43 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.60 7.98 -51.93 -0.41 0.18 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.53 6.20 -51.93 -0.32 0.21 16 30 H 0.07 0.72 7.43 -51.93 -0.39 0.34 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 33 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 34 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.07 8.08 -51.93 -0.42 0.65 16 LS Contribution 304.82 15.07 4.59 4.59 Total: -1.00 -33.91 304.82 -7.20 -41.11 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -5.10 Total: -2.89 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 0.60 Total: -4.65 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.26 Total: -34.63 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.32 Total: -15.91 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.91 -7.20 -41.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598234479.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.007 kcal (2) G-P(sol) polarization free energy of solvation -33.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds