Wall clock time and date at job start Mon Mar 30 2020 04:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50032 * 110.11157 * 2 1 4 4 O 1.45643 * 105.15816 * 279.71696 * 3 2 1 5 5 C 1.46331 * 108.84739 * 352.67866 * 4 3 2 6 6 C 1.50575 * 102.45801 * 334.43833 * 5 4 3 7 7 H 1.08999 * 109.73691 * 291.01392 * 6 5 4 8 8 C 1.49961 * 127.25882 * 154.06663 * 6 5 4 9 9 N 1.49352 * 104.71522 * 216.67682 * 8 6 5 10 10 C 1.34769 * 126.15012 * 187.70830 * 9 8 6 11 11 O 1.21288 * 120.00106 * 179.97438 * 10 9 8 12 12 C 1.50696 * 119.99967 * 359.97438 * 10 9 8 13 13 S 1.81002 * 109.47330 * 179.97438 * 12 10 9 14 14 C 1.76195 * 100.00363 * 180.02562 * 13 12 10 15 15 H 1.07994 * 119.99739 * 359.97438 * 14 13 12 16 16 C 1.38802 * 119.99998 * 180.02562 * 14 13 12 17 17 N 1.31630 * 120.00146 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99818 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46841 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47057 * 119.99838 * 18 16 14 21 21 H 1.48500 * 109.46894 * 240.00102 * 18 16 14 22 22 C 1.49832 * 107.70255 * 7.68833 * 9 8 6 23 23 H 1.09000 * 109.47032 * 58.98439 * 1 2 3 24 24 H 1.08997 * 109.47286 * 178.98584 * 1 2 3 25 25 H 1.09004 * 109.47283 * 298.99122 * 1 2 3 26 26 H 1.09002 * 110.32173 * 38.66843 * 3 2 1 27 27 H 1.08998 * 110.32384 * 160.77096 * 3 2 1 28 28 H 1.08999 * 110.75017 * 216.21897 * 5 4 3 29 29 H 1.09005 * 111.03167 * 92.78142 * 5 4 3 30 30 H 1.09003 * 110.38937 * 335.48217 * 8 6 5 31 31 H 1.08992 * 110.39204 * 97.75190 * 8 6 5 32 32 H 1.08999 * 109.47429 * 299.99878 * 12 10 9 33 33 H 1.08997 * 109.47442 * 60.00259 * 12 10 9 34 34 H 0.97003 * 119.99703 * 180.02562 * 17 16 14 35 35 H 1.08998 * 110.87316 * 267.27491 * 22 9 8 36 36 H 1.08995 * 110.87471 * 143.58438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0458 1.4088 0.0000 4 8 1.9540 1.8480 -1.3856 5 6 1.5747 0.7067 -2.2191 6 6 2.0741 -0.4637 -1.4141 7 1 3.1641 -0.4697 -1.4105 8 6 1.5521 -1.8693 -1.4356 9 7 1.6542 -2.3337 -0.0198 10 6 1.4359 -3.5875 0.4234 11 8 1.5513 -3.8424 1.6035 12 6 1.0482 -4.6730 -0.5475 13 16 0.8279 -6.2314 0.3463 14 6 0.3927 -7.2925 -0.9913 15 1 0.3338 -6.8992 -1.9953 16 6 0.1245 -8.6336 -0.7543 17 7 0.1959 -9.1129 0.4695 18 14 -0.3376 -9.7584 -2.1724 19 1 -0.3483 -8.9809 -3.4376 20 1 0.6546 -10.8585 -2.2752 21 1 -1.6870 -10.3296 -1.9316 22 6 2.0435 -1.1550 0.8193 23 1 -0.3633 0.5295 -0.8807 24 1 -0.3634 -1.0275 -0.0182 25 1 -0.3634 0.4981 0.8989 26 1 1.4266 2.0387 0.6387 27 1 3.0823 1.4325 0.3366 28 1 2.0741 0.7524 -3.1869 29 1 0.4931 0.6566 -2.3452 30 1 0.5134 -1.8837 -1.7659 31 1 2.1654 -2.4923 -2.0865 32 1 0.1153 -4.4022 -1.0417 33 1 1.8339 -4.7906 -1.2937 34 1 0.0088 -10.0502 0.6350 35 1 3.1262 -1.0996 0.9327 36 1 1.5515 -1.1907 1.7913 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598234479.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:26 Heat of formation + Delta-G solvation = -71.420025 kcal Electronic energy + Delta-G solvation = -18881.288914 eV Core-core repulsion = 15877.951955 eV Total energy + Delta-G solvation = -3003.336959 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.52853 -40.09071 -37.35338 -34.59768 -33.57300 -31.89897 -30.89708 -28.23965 -27.82802 -27.55656 -26.38153 -21.89420 -20.81167 -20.50262 -19.52914 -18.12363 -17.78310 -17.10431 -16.89624 -16.64022 -16.35291 -15.84992 -15.67050 -15.47710 -14.83352 -14.53117 -14.09212 -13.77026 -13.61395 -13.34227 -13.20120 -13.15308 -12.95002 -12.90844 -12.64692 -12.60955 -12.22586 -11.72326 -11.67771 -11.27902 -11.16727 -10.93355 -10.55417 -10.29454 -9.83600 -8.69554 -8.35838 -6.14678 1.19911 1.41366 1.42714 1.53078 1.55802 1.92854 2.26028 2.49387 2.80860 2.98681 3.24144 3.51407 3.69245 3.74927 3.97973 4.02777 4.13051 4.23383 4.30501 4.40611 4.42243 4.55010 4.60871 4.66139 4.73870 4.81637 4.86959 4.90566 4.96107 5.05549 5.10511 5.30032 5.41014 5.70545 6.18883 6.27869 7.04948 7.05692 8.73744 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.039781 B = 0.003942 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.676857 B = 7102.159064 C = 7562.514564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.083 3.917 4 O -0.401 6.401 5 C 0.074 3.926 6 C -0.145 4.145 7 H 0.098 0.902 8 C 0.122 3.878 9 N -0.623 5.623 10 C 0.550 3.450 11 O -0.566 6.566 12 C -0.119 4.119 13 S -0.152 6.152 14 C -0.545 4.545 15 H 0.083 0.917 16 C 0.014 3.986 17 N -0.912 5.912 18 Si 1.000 3.000 19 H -0.256 1.256 20 H -0.274 1.274 21 H -0.274 1.274 22 C 0.136 3.864 23 H 0.079 0.921 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.271 0.729 35 H 0.082 0.918 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.562 21.866 -7.813 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 C 0.007 3.993 4 O -0.322 6.322 5 C -0.002 4.002 6 C -0.164 4.164 7 H 0.116 0.884 8 C 0.001 3.999 9 N -0.359 5.359 10 C 0.338 3.662 11 O -0.445 6.445 12 C -0.270 4.270 13 S 0.075 5.925 14 C -0.693 4.693 15 H 0.101 0.899 16 C -0.191 4.191 17 N -0.548 5.548 18 Si 0.821 3.179 19 H -0.179 1.179 20 H -0.199 1.199 21 H -0.199 1.199 22 C 0.015 3.985 23 H 0.098 0.902 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.111 0.889 27 H 0.100 0.900 28 H 0.128 0.872 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.741 21.478 -6.010 22.471 hybrid contribution -0.380 -1.018 -1.425 1.792 sum 2.360 20.460 -7.435 21.897 Atomic orbital electron populations 1.22027 0.92439 1.02166 1.03508 1.22152 0.98070 0.95243 0.97066 1.22180 1.01918 0.91396 0.83854 1.89424 1.91360 1.33706 1.17668 1.22664 1.00960 0.82356 0.94171 1.22848 1.02548 0.94386 0.96610 0.88423 1.21256 1.02947 0.94175 0.81497 1.49785 1.69056 1.07125 1.09915 1.19747 0.76025 0.82258 0.88153 1.90698 1.53000 1.81654 1.19117 1.23300 1.05555 0.96732 1.01432 1.85604 1.90689 1.00595 1.15572 1.23220 1.54337 0.96774 0.94978 0.89862 1.26133 0.94406 0.98958 0.99561 1.70192 1.47110 1.15466 1.22035 0.84895 0.77942 0.77445 0.77596 1.17928 1.19914 1.19922 1.21371 1.00260 0.82656 0.94211 0.90225 0.93425 0.91396 0.88882 0.90022 0.87244 0.89912 0.89565 0.89156 0.87541 0.87485 0.91966 0.89959 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.86 71.98 0.57 -1.80 16 2 C -0.12 -1.96 1.35 -51.96 -0.07 -2.03 16 3 C 0.08 1.12 7.05 71.03 0.50 1.62 16 4 O -0.40 -6.52 11.62 -148.98 -1.73 -8.25 16 5 C 0.07 0.89 7.18 71.20 0.51 1.40 16 6 C -0.14 -2.04 2.80 -10.61 -0.03 -2.07 16 7 H 0.10 1.37 8.13 -2.39 -0.02 1.35 16 8 C 0.12 2.21 5.70 84.85 0.48 2.70 16 9 N -0.62 -16.72 2.75 -815.55 -2.24 -18.96 16 10 C 0.55 21.02 7.90 87.66 0.69 21.72 16 11 O -0.57 -27.02 16.20 -3.05 -0.05 -27.07 16 12 C -0.12 -4.79 5.40 71.23 0.38 -4.41 16 13 S -0.15 -8.48 20.57 -56.49 -1.16 -9.65 16 14 C -0.55 -31.06 9.50 67.95 0.65 -30.42 16 15 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 16 C 0.01 0.80 5.49 84.86 0.47 1.27 16 17 N -0.91 -55.95 13.22 21.65 0.29 -55.67 16 18 Si 1.00 43.29 29.55 68.60 2.03 45.32 16 19 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 22 C 0.14 3.00 6.20 84.96 0.53 3.53 16 23 H 0.08 1.08 5.75 -2.39 -0.01 1.07 16 24 H 0.05 0.99 6.47 -2.39 -0.02 0.97 16 25 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.09 1.09 7.98 -2.39 -0.02 1.07 16 27 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.08 0.87 6.20 -2.38 -0.01 0.86 16 30 H 0.09 1.42 7.43 -2.39 -0.02 1.40 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 33 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 34 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 Total: -1.00 -75.55 304.82 2.88 -72.67 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.07 Total: 10.10 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 4.68 Total: -8.50 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -1.96 Total: -74.63 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -1.78 Total: -35.32 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.65 kcal Total: -75.55 2.88 -72.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598234479.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.253 kcal (2) G-P(sol) polarization free energy of solvation -75.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds