Wall clock time and date at job start Mon Mar 30 2020 04:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 114.00261 * 2 1 4 4 C 1.52990 * 109.47356 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47199 * 64.99821 * 4 3 2 6 6 C 1.36940 * 119.99980 * 269.99973 * 5 4 3 7 7 H 1.08000 * 120.00135 * 322.82036 * 6 5 4 8 8 C 1.38814 * 119.99720 * 142.82632 * 6 5 4 9 9 N 1.31620 * 119.99984 * 157.43276 * 8 6 5 10 10 Si 1.86793 * 120.00126 * 337.43026 * 8 6 5 11 11 H 1.48499 * 109.47488 * 95.34957 * 10 8 6 12 12 H 1.48501 * 109.47340 * 215.34842 * 10 8 6 13 13 H 1.48505 * 109.47058 * 335.34711 * 10 8 6 14 14 C 1.46501 * 120.00214 * 90.00090 * 5 4 3 15 15 C 1.53001 * 109.47000 * 86.14474 * 14 5 4 16 16 H 1.08994 * 109.47487 * 60.02460 * 15 14 5 17 17 O 1.42900 * 109.47160 * 300.02187 * 15 14 5 18 18 C 1.50705 * 109.47051 * 180.02562 * 15 14 5 19 19 C 1.33386 * 125.20563 * 261.77936 * 18 15 14 20 20 C 1.38420 * 114.92217 * 180.24902 * 19 18 15 21 21 C 1.33388 * 114.91885 * 359.48770 * 20 19 18 22 22 S 1.75886 * 125.19884 * 81.75569 * 18 15 14 23 23 H 1.09005 * 109.47442 * 300.00232 * 1 2 3 24 24 H 1.09001 * 109.47409 * 60.00135 * 1 2 3 25 25 H 1.08994 * 109.47322 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46678 * 59.99714 * 3 2 1 27 27 H 1.09004 * 109.46700 * 299.99885 * 3 2 1 28 28 H 1.09003 * 109.47399 * 305.00043 * 4 3 2 29 29 H 1.08997 * 109.47446 * 184.99954 * 4 3 2 30 30 H 0.97002 * 120.00194 * 179.97438 * 9 8 6 31 31 H 1.09005 * 109.46520 * 326.15137 * 14 5 4 32 32 H 1.08995 * 109.47307 * 206.14965 * 14 5 4 33 33 H 0.96694 * 114.00511 * 299.99948 * 17 15 14 34 34 H 1.07998 * 122.53621 * 359.97438 * 19 18 15 35 35 H 1.08003 * 122.53965 * 179.73083 * 20 19 18 36 36 H 1.08003 * 125.20347 * 180.20467 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5639 -1.2508 6 6 4.0978 -0.7975 -1.3343 7 1 4.4619 -1.3602 -0.4875 8 6 3.7527 -1.4543 -2.5076 9 7 4.2575 -2.6411 -2.7703 10 14 2.5718 -0.6539 -3.7134 11 1 3.3435 0.0563 -4.7647 12 1 1.7234 -1.6979 -4.3424 13 1 1.7095 0.3162 -2.9918 14 6 4.2883 1.3997 -2.4130 15 6 5.7435 1.8651 -2.3309 16 1 6.4026 0.9971 -2.3209 17 8 5.9347 2.6222 -1.1342 18 6 6.0639 2.7253 -3.5261 19 6 6.6840 2.3071 -4.6306 20 6 6.8749 3.2801 -5.5964 21 6 6.4003 4.4861 -5.2806 22 16 5.6770 4.4343 -3.6782 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8508 0.5685 0.8427 29 1 3.9784 2.1765 0.0902 30 1 4.0161 -3.1003 -3.5900 31 1 3.6292 2.2679 -2.4233 32 1 4.1425 0.8219 -3.3256 33 1 5.3791 3.4113 -1.0750 34 1 7.0160 1.2875 -4.7596 35 1 7.3671 3.0773 -6.5361 36 1 6.4561 5.3616 -5.9105 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687016499.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:01 Heat of formation + Delta-G solvation = -28.147452 kcal Electronic energy + Delta-G solvation = -19435.599998 eV Core-core repulsion = 16434.139478 eV Total energy + Delta-G solvation = -3001.460520 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.39148 -37.35679 -36.58139 -34.81512 -31.64948 -30.87398 -29.02326 -26.93077 -25.77216 -24.19220 -23.24865 -22.01313 -20.20142 -19.21724 -17.66168 -16.86557 -15.81833 -15.79819 -15.36069 -15.24870 -14.97143 -14.30626 -14.19953 -13.69129 -13.39712 -12.90612 -12.63120 -12.48644 -12.29315 -11.99505 -11.78107 -11.46864 -11.20222 -11.04510 -10.90889 -10.63123 -10.51178 -10.37983 -10.06861 -9.67860 -9.49747 -8.97903 -8.55155 -8.38847 -8.32960 -6.79803 -5.92308 -3.30744 1.14738 1.75454 2.12170 2.92151 3.32851 3.49637 3.56462 4.49297 4.57761 4.76707 4.85585 5.13815 5.28771 5.40199 5.63181 5.65937 5.72230 5.73214 5.76308 5.82926 5.94844 6.01829 6.06908 6.17734 6.25936 6.34216 6.43839 6.50930 6.57522 6.72220 6.83758 7.87690 7.94288 8.11989 8.44419 9.02934 9.77268 10.13315 11.23688 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.019436 B = 0.007055 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.266987 B = 3967.628368 C = 4570.261380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.355 6.355 3 C 0.039 3.961 4 C 0.151 3.849 5 N -0.587 5.587 6 C -0.245 4.245 7 H 0.082 0.918 8 C 0.038 3.962 9 N -0.902 5.902 10 Si 0.871 3.129 11 H -0.290 1.290 12 H -0.303 1.303 13 H -0.268 1.268 14 C 0.115 3.885 15 C 0.154 3.846 16 H 0.124 0.876 17 O -0.542 6.542 18 C -0.184 4.184 19 C -0.146 4.146 20 C -0.126 4.126 21 C -0.226 4.226 22 S 0.080 5.920 23 H 0.028 0.972 24 H 0.029 0.971 25 H 0.078 0.922 26 H 0.030 0.970 27 H 0.032 0.968 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.261 0.739 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.358 0.642 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.226 14.130 -1.342 14.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C -0.040 4.040 4 C 0.025 3.975 5 N -0.307 5.307 6 C -0.374 4.374 7 H 0.099 0.901 8 C -0.162 4.162 9 N -0.544 5.544 10 Si 0.702 3.298 11 H -0.219 1.219 12 H -0.231 1.231 13 H -0.193 1.193 14 C -0.012 4.012 15 C 0.090 3.910 16 H 0.142 0.858 17 O -0.346 6.346 18 C -0.303 4.303 19 C -0.175 4.175 20 C -0.157 4.157 21 C -0.361 4.361 22 S 0.342 5.658 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.097 0.903 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.203 0.797 34 H 0.161 0.839 35 H 0.155 0.845 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.388 14.369 -0.382 14.380 hybrid contribution -0.804 0.030 -2.163 2.308 sum -1.192 14.400 -2.545 14.671 Atomic orbital electron populations 1.22648 0.83700 1.01888 0.98452 1.88188 1.17108 1.27113 1.94834 1.23410 0.98215 0.84850 0.97537 1.21079 0.88818 0.97166 0.90461 1.43942 1.75141 1.03330 1.08242 1.18729 1.37270 0.80309 1.01045 0.90073 1.25391 0.97714 0.95080 0.98013 1.69864 1.43300 1.15604 1.25588 0.87037 0.83397 0.78624 0.80759 1.21903 1.23123 1.19281 1.21890 0.91623 0.94672 0.93051 1.21478 1.00726 0.90768 0.78037 0.85844 1.86675 1.66313 1.40870 1.40696 1.25861 1.04977 0.96945 1.02472 1.20172 1.02449 1.01396 0.93493 1.20183 1.02371 0.92333 1.00780 1.25467 1.08501 1.02091 1.00028 1.83935 1.59781 1.07555 1.14516 0.95313 0.95279 0.90335 0.95175 0.94931 0.91963 0.92109 0.92904 0.94309 0.91187 0.79652 0.83948 0.84481 0.82245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.59 10.18 -35.23 -0.36 -7.94 16 3 C 0.04 0.73 6.28 37.15 0.23 0.96 16 4 C 0.15 2.96 5.83 -4.05 -0.02 2.94 16 5 N -0.59 -13.56 2.02 -173.24 -0.35 -13.91 16 6 C -0.24 -6.78 9.42 -15.06 -0.14 -6.92 16 7 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 8 C 0.04 1.09 5.28 -17.43 -0.09 0.99 16 9 N -0.90 -27.55 13.97 55.49 0.78 -26.78 16 10 Si 0.87 22.54 25.05 -169.99 -4.26 18.28 16 11 H -0.29 -7.31 6.66 56.52 0.38 -6.93 16 12 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 13 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.12 2.41 4.09 -4.04 -0.02 2.40 16 15 C 0.15 2.87 3.68 -27.88 -0.10 2.77 16 16 H 0.12 2.59 8.13 -51.93 -0.42 2.17 16 17 O -0.54 -9.35 11.70 -35.23 -0.41 -9.76 16 18 C -0.18 -3.05 5.49 -36.00 -0.20 -3.25 16 19 C -0.15 -2.32 10.04 -41.21 -0.41 -2.73 16 20 C -0.13 -1.70 10.18 -41.21 -0.42 -2.12 16 21 C -0.23 -2.83 11.23 29.04 0.33 -2.51 16 22 S 0.08 1.08 22.60 -107.50 -2.43 -1.35 16 23 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 1.28 8.04 -51.93 -0.42 0.86 16 29 H 0.06 1.01 6.49 -51.93 -0.34 0.67 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.07 1.66 3.43 -51.93 -0.18 1.48 16 33 H 0.36 5.00 8.09 45.56 0.37 5.36 16 34 H 0.14 2.24 8.06 -52.49 -0.42 1.81 16 35 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 36 H 0.16 1.54 8.06 -52.48 -0.42 1.11 16 LS Contribution 312.44 15.07 4.71 4.71 Total: -1.00 -31.91 312.44 -6.43 -38.34 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.37 Total: 4.24 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 0.26 Total: -5.84 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.43 Total: -40.68 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.77 Total: -17.70 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.26 Total: 18.28 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.43 Total: -1.35 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.91 -6.43 -38.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687016499.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.197 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds