Wall clock time and date at job start Mon Mar 30 2020 04:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 114.00261 * 2 1 4 4 C 1.52990 * 109.47356 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47199 * 64.99821 * 4 3 2 6 6 C 1.36940 * 119.99980 * 269.99973 * 5 4 3 7 7 H 1.08000 * 120.00135 * 322.82036 * 6 5 4 8 8 C 1.38814 * 119.99720 * 142.82632 * 6 5 4 9 9 N 1.31620 * 119.99984 * 157.43276 * 8 6 5 10 10 Si 1.86793 * 120.00126 * 337.43026 * 8 6 5 11 11 H 1.48499 * 109.47488 * 95.34957 * 10 8 6 12 12 H 1.48501 * 109.47340 * 215.34842 * 10 8 6 13 13 H 1.48505 * 109.47058 * 335.34711 * 10 8 6 14 14 C 1.46501 * 120.00214 * 90.00090 * 5 4 3 15 15 C 1.53001 * 109.47000 * 86.14474 * 14 5 4 16 16 H 1.08994 * 109.47487 * 60.02460 * 15 14 5 17 17 O 1.42900 * 109.47160 * 300.02187 * 15 14 5 18 18 C 1.50705 * 109.47051 * 180.02562 * 15 14 5 19 19 C 1.33386 * 125.20563 * 261.77936 * 18 15 14 20 20 C 1.38420 * 114.92217 * 180.24902 * 19 18 15 21 21 C 1.33388 * 114.91885 * 359.48770 * 20 19 18 22 22 S 1.75886 * 125.19884 * 81.75569 * 18 15 14 23 23 H 1.09005 * 109.47442 * 300.00232 * 1 2 3 24 24 H 1.09001 * 109.47409 * 60.00135 * 1 2 3 25 25 H 1.08994 * 109.47322 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46678 * 59.99714 * 3 2 1 27 27 H 1.09004 * 109.46700 * 299.99885 * 3 2 1 28 28 H 1.09003 * 109.47399 * 305.00043 * 4 3 2 29 29 H 1.08997 * 109.47446 * 184.99954 * 4 3 2 30 30 H 0.97002 * 120.00194 * 179.97438 * 9 8 6 31 31 H 1.09005 * 109.46520 * 326.15137 * 14 5 4 32 32 H 1.08995 * 109.47307 * 206.14965 * 14 5 4 33 33 H 0.96694 * 114.00511 * 299.99948 * 17 15 14 34 34 H 1.07998 * 122.53621 * 359.97438 * 19 18 15 35 35 H 1.08003 * 122.53965 * 179.73083 * 20 19 18 36 36 H 1.08003 * 125.20347 * 180.20467 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5639 -1.2508 6 6 4.0978 -0.7975 -1.3343 7 1 4.4619 -1.3602 -0.4875 8 6 3.7527 -1.4543 -2.5076 9 7 4.2575 -2.6411 -2.7703 10 14 2.5718 -0.6539 -3.7134 11 1 3.3435 0.0563 -4.7647 12 1 1.7234 -1.6979 -4.3424 13 1 1.7095 0.3162 -2.9918 14 6 4.2883 1.3997 -2.4130 15 6 5.7435 1.8651 -2.3309 16 1 6.4026 0.9971 -2.3209 17 8 5.9347 2.6222 -1.1342 18 6 6.0639 2.7253 -3.5261 19 6 6.6840 2.3071 -4.6306 20 6 6.8749 3.2801 -5.5964 21 6 6.4003 4.4861 -5.2806 22 16 5.6770 4.4343 -3.6782 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8508 0.5685 0.8427 29 1 3.9784 2.1765 0.0902 30 1 4.0161 -3.1003 -3.5900 31 1 3.6292 2.2679 -2.4233 32 1 4.1425 0.8219 -3.3256 33 1 5.3791 3.4113 -1.0750 34 1 7.0160 1.2875 -4.7596 35 1 7.3671 3.0773 -6.5361 36 1 6.4561 5.3616 -5.9105 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687016499.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:00 Heat of formation + Delta-G solvation = -51.548792 kcal Electronic energy + Delta-G solvation = -19436.614756 eV Core-core repulsion = 16434.139478 eV Total energy + Delta-G solvation = -3002.475278 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.81251 -38.75981 -37.92115 -36.50162 -33.73601 -32.23388 -30.50944 -28.49287 -27.21852 -25.70109 -24.84315 -23.37225 -21.92457 -20.37337 -19.15417 -18.54381 -17.47531 -17.29176 -16.83884 -16.72219 -16.37668 -15.91901 -15.60445 -15.22072 -14.86813 -14.63015 -14.38641 -13.75785 -13.61574 -13.46181 -13.09316 -12.94757 -12.78553 -12.62136 -12.48216 -12.36265 -12.07718 -11.80435 -11.73769 -11.51272 -11.25114 -10.60294 -10.38810 -9.67038 -9.37504 -8.70214 -8.14147 -5.48170 0.02882 0.65379 1.03811 1.25802 1.37930 1.49261 1.79970 2.44084 2.98268 3.22660 3.31648 3.48555 3.86539 4.12430 4.19610 4.25988 4.37783 4.45512 4.55506 4.58689 4.62783 4.64189 4.66931 4.78242 4.80573 4.89041 4.98626 5.21518 5.26124 5.38021 5.54132 5.97502 6.22340 6.53240 6.71007 7.04160 7.67319 8.06617 9.06669 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.019436 B = 0.007055 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.266987 B = 3967.628368 C = 4570.261380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.041 3.959 4 C 0.147 3.853 5 N -0.599 5.599 6 C -0.224 4.224 7 H 0.038 0.962 8 C -0.017 4.017 9 N -0.953 5.953 10 Si 0.934 3.066 11 H -0.281 1.281 12 H -0.316 1.316 13 H -0.258 1.258 14 C 0.116 3.884 15 C 0.171 3.829 16 H 0.086 0.914 17 O -0.547 6.547 18 C -0.222 4.222 19 C -0.153 4.153 20 C -0.142 4.142 21 C -0.209 4.209 22 S 0.119 5.881 23 H 0.060 0.940 24 H 0.031 0.969 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.095 0.905 30 H 0.259 0.741 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.375 0.625 34 H 0.130 0.870 35 H 0.162 0.838 36 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.128 17.952 -2.009 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.320 6.320 3 C -0.038 4.038 4 C 0.022 3.978 5 N -0.320 5.320 6 C -0.354 4.354 7 H 0.056 0.944 8 C -0.212 4.212 9 N -0.598 5.598 10 Si 0.765 3.235 11 H -0.209 1.209 12 H -0.245 1.245 13 H -0.182 1.182 14 C -0.010 4.010 15 C 0.107 3.893 16 H 0.104 0.896 17 O -0.353 6.353 18 C -0.340 4.340 19 C -0.184 4.184 20 C -0.172 4.172 21 C -0.344 4.344 22 S 0.381 5.619 23 H 0.078 0.922 24 H 0.050 0.950 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.223 0.777 34 H 0.147 0.853 35 H 0.179 0.821 36 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -1.304 18.265 -1.028 18.340 hybrid contribution -0.443 -1.037 -1.865 2.179 sum -1.747 17.228 -2.893 17.557 Atomic orbital electron populations 1.22817 0.81528 1.02672 1.00065 1.88124 1.19722 1.28944 1.95212 1.23383 0.96754 0.84283 0.99337 1.21234 0.90351 0.98156 0.88072 1.43995 1.76116 1.01910 1.09980 1.18488 1.35117 0.82531 0.99274 0.94427 1.25888 0.99448 0.95717 1.00165 1.69992 1.45514 1.17707 1.26604 0.86001 0.81092 0.77439 0.78978 1.20872 1.24479 1.18196 1.21866 0.93708 0.94590 0.90870 1.20823 0.98136 0.90633 0.79690 0.89594 1.86639 1.66872 1.41640 1.40131 1.25590 1.07369 0.99268 1.01817 1.20394 1.02095 1.01700 0.94182 1.20358 1.03411 0.92081 1.01364 1.25990 1.06082 1.02814 0.99519 1.83729 1.59053 1.04067 1.15032 0.92178 0.94998 0.90181 0.91310 0.94856 0.93694 0.88697 0.93224 0.91668 0.93851 0.77667 0.85254 0.82085 0.78645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.40 -16.69 10.18 -148.98 -1.52 -18.21 16 3 C 0.04 1.42 6.28 71.98 0.45 1.87 16 4 C 0.15 5.57 5.83 86.38 0.50 6.08 16 5 N -0.60 -27.70 2.02 -702.02 -1.42 -29.12 16 6 C -0.22 -12.88 9.42 84.03 0.79 -12.08 16 7 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 8 C -0.02 -1.01 5.28 84.86 0.45 -0.56 16 9 N -0.95 -61.01 13.97 21.65 0.30 -60.71 16 10 Si 0.93 47.80 25.05 68.60 1.72 49.51 16 11 H -0.28 -13.74 6.66 99.48 0.66 -13.08 16 12 H -0.32 -16.60 7.11 99.48 0.71 -15.90 16 13 H -0.26 -12.57 7.11 99.48 0.71 -11.87 16 14 C 0.12 4.77 4.09 86.38 0.35 5.12 16 15 C 0.17 6.35 3.68 29.85 0.11 6.46 16 16 H 0.09 3.79 8.13 -2.39 -0.02 3.77 16 17 O -0.55 -18.07 11.70 -148.98 -1.74 -19.81 16 18 C -0.22 -7.06 5.49 24.59 0.14 -6.93 16 19 C -0.15 -4.74 10.04 21.21 0.21 -4.53 16 20 C -0.14 -3.43 10.18 21.22 0.22 -3.21 16 21 C -0.21 -4.35 11.23 66.72 0.75 -3.60 16 22 S 0.12 2.79 22.60 -56.49 -1.28 1.52 16 23 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 24 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.04 1.84 8.04 -2.39 -0.02 1.82 16 29 H 0.10 2.89 6.49 -2.39 -0.02 2.88 16 30 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 31 H 0.07 2.32 8.10 -2.38 -0.02 2.30 16 32 H 0.04 2.04 3.43 -2.39 -0.01 2.03 16 33 H 0.38 9.36 8.09 -74.06 -0.60 8.76 16 34 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 35 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 36 H 0.20 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -72.11 312.44 1.72 -70.39 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.43 Total: 15.75 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 5.22 Total: -9.32 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -1.11 Total: -89.83 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -3.26 Total: -38.02 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 1.72 Total: 49.51 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.28 Total: 1.52 kcal Total: -72.11 1.72 -70.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687016499.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.842 kcal (2) G-P(sol) polarization free energy of solvation -72.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds