Wall clock time and date at job start Mon Mar 30 2020 04:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99692 * 2 1 4 4 C 1.53007 * 109.46654 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46699 * 63.53878 * 4 3 2 6 6 C 1.36935 * 120.00454 * 83.44713 * 5 4 3 7 7 H 1.08000 * 120.00177 * 168.30956 * 6 5 4 8 8 C 1.38811 * 119.99706 * 348.30876 * 6 5 4 9 9 N 1.31621 * 120.00155 * 8.04373 * 8 6 5 10 10 Si 1.86805 * 119.99978 * 188.04402 * 8 6 5 11 11 H 1.48499 * 109.46743 * 90.00050 * 10 8 6 12 12 H 1.48499 * 109.47186 * 210.00033 * 10 8 6 13 13 H 1.48500 * 109.46791 * 330.00372 * 10 8 6 14 14 C 1.46500 * 119.99434 * 263.43775 * 5 4 3 15 15 C 1.52999 * 109.47639 * 264.30703 * 14 5 4 16 16 H 1.08999 * 109.47063 * 306.13969 * 15 14 5 17 17 O 1.42901 * 109.46598 * 66.13526 * 15 14 5 18 18 C 1.50695 * 109.47067 * 186.13401 * 15 14 5 19 19 C 1.33390 * 125.20207 * 100.00538 * 18 15 14 20 20 C 1.38422 * 114.92383 * 179.97438 * 19 18 15 21 21 C 1.33390 * 114.91822 * 359.97438 * 20 19 18 22 22 S 1.75882 * 125.20521 * 279.69225 * 18 15 14 23 23 H 1.08999 * 109.46978 * 299.99580 * 1 2 3 24 24 H 1.09000 * 109.47849 * 59.99402 * 1 2 3 25 25 H 1.08998 * 109.47298 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46824 * 60.00644 * 3 2 1 27 27 H 1.08995 * 109.47518 * 300.00052 * 3 2 1 28 28 H 1.08990 * 109.47416 * 303.53264 * 4 3 2 29 29 H 1.08998 * 109.46826 * 183.52879 * 4 3 2 30 30 H 0.97001 * 119.99727 * 179.97438 * 9 8 6 31 31 H 1.09007 * 109.46803 * 144.30596 * 14 5 4 32 32 H 1.09001 * 109.47063 * 24.31325 * 14 5 4 33 33 H 0.96698 * 114.00372 * 60.00158 * 17 15 14 34 34 H 1.08007 * 122.53973 * 359.97438 * 19 18 15 35 35 H 1.07995 * 122.54106 * 180.02562 * 20 19 18 36 36 H 1.08001 * 125.19960 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9730 0.5327 -1.2375 6 6 4.1319 1.2695 -2.3808 7 1 4.6298 0.8381 -3.2365 8 6 3.6529 2.5711 -2.4398 9 7 3.1897 3.1518 -1.3532 10 14 3.6655 3.4984 -4.0613 11 1 2.3872 3.2594 -4.7782 12 1 3.8219 4.9517 -3.7992 13 1 4.7976 3.0212 -4.8955 14 6 4.2409 -0.9075 -1.2512 15 6 5.7371 -1.1501 -1.0428 16 1 6.3036 -0.5798 -1.7789 17 8 6.1087 -0.7322 0.2723 18 6 6.0355 -2.6181 -1.2065 19 6 6.5416 -3.1822 -2.3042 20 6 6.7316 -4.5508 -2.2222 21 6 6.3804 -5.0982 -1.0575 22 16 5.7770 -3.8487 0.0233 23 1 -0.3633 0.5138 0.8900 24 1 -0.3635 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6885 1.8463 0.8900 27 1 1.6885 1.8464 -0.8899 28 1 3.8532 0.5899 0.8557 29 1 3.9786 2.1784 0.0626 30 1 2.8554 4.0614 -1.3944 31 1 3.9353 -1.3248 -2.2107 32 1 3.6797 -1.3890 -0.4503 33 1 5.6428 -1.1987 0.9796 34 1 6.7847 -2.6140 -3.1900 35 1 7.1346 -5.1314 -3.0388 36 1 6.4576 -6.1476 -0.8144 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687016500.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:03 Heat of formation + Delta-G solvation = -42.455321 kcal Electronic energy + Delta-G solvation = -19277.708617 eV Core-core repulsion = 16275.627661 eV Total energy + Delta-G solvation = -3002.080956 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.63134 -38.67635 -37.76479 -36.57492 -33.32073 -31.75484 -30.39145 -28.27824 -27.09696 -25.80047 -24.37440 -23.07900 -22.10719 -20.26937 -19.01052 -18.52990 -17.29952 -16.83767 -16.64252 -16.38435 -16.19200 -15.89707 -15.44753 -15.20593 -14.83436 -14.56754 -13.84635 -13.53106 -13.25994 -13.17277 -13.01949 -12.76394 -12.62130 -12.54903 -12.34165 -12.28051 -11.84158 -11.77018 -11.60741 -11.48592 -11.30030 -10.71570 -10.08462 -9.60007 -9.34419 -8.65237 -7.66816 -5.16378 0.10394 0.72031 1.12805 1.49297 1.50682 1.57951 1.87149 2.53425 3.28840 3.36608 3.51495 3.57879 4.05602 4.25425 4.32127 4.47527 4.54177 4.61213 4.66597 4.72455 4.80721 4.81344 4.92153 4.95370 5.04970 5.25207 5.29467 5.43329 5.55983 5.61575 5.82833 5.86957 6.40629 6.66177 6.73190 7.25699 7.93261 8.34264 9.23948 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.018384 B = 0.006178 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.719323 B = 4531.318127 C = 5407.988904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.418 6.418 3 C 0.074 3.926 4 C 0.187 3.813 5 N -0.597 5.597 6 C -0.243 4.243 7 H 0.074 0.926 8 C -0.057 4.057 9 N -0.931 5.931 10 Si 0.967 3.033 11 H -0.292 1.292 12 H -0.296 1.296 13 H -0.275 1.275 14 C 0.142 3.858 15 C 0.163 3.837 16 H 0.090 0.910 17 O -0.558 6.558 18 C -0.215 4.215 19 C -0.147 4.147 20 C -0.139 4.139 21 C -0.212 4.212 22 S 0.098 5.902 23 H 0.041 0.959 24 H 0.023 0.977 25 H 0.096 0.904 26 H 0.017 0.983 27 H 0.053 0.947 28 H 0.018 0.982 29 H 0.090 0.910 30 H 0.245 0.755 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.372 0.628 34 H 0.141 0.859 35 H 0.165 0.835 36 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.158 -14.055 2.098 14.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.338 6.338 3 C -0.004 4.004 4 C 0.061 3.939 5 N -0.317 5.317 6 C -0.373 4.373 7 H 0.092 0.908 8 C -0.250 4.250 9 N -0.581 5.581 10 Si 0.797 3.203 11 H -0.220 1.220 12 H -0.223 1.223 13 H -0.200 1.200 14 C 0.015 3.985 15 C 0.099 3.901 16 H 0.108 0.892 17 O -0.363 6.363 18 C -0.333 4.333 19 C -0.177 4.177 20 C -0.169 4.169 21 C -0.347 4.347 22 S 0.361 5.639 23 H 0.060 0.940 24 H 0.042 0.958 25 H 0.114 0.886 26 H 0.035 0.965 27 H 0.071 0.929 28 H 0.036 0.964 29 H 0.108 0.892 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.159 0.841 35 H 0.182 0.818 36 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 2.063 -13.655 3.235 14.183 hybrid contribution -0.231 0.769 -2.011 2.165 sum 1.832 -12.886 1.224 13.073 Atomic orbital electron populations 1.22708 0.81741 1.02653 0.99239 1.87793 1.19742 1.30919 1.95353 1.23637 0.96734 0.81584 0.98448 1.20918 0.90336 0.97738 0.84880 1.44037 1.77337 1.02764 1.07580 1.19634 1.29748 0.95683 0.92192 0.90826 1.25428 1.01155 0.98460 0.99955 1.70273 1.48562 1.13034 1.26244 0.85247 0.77491 0.77437 0.80153 1.21963 1.22261 1.19989 1.21362 0.92303 0.84859 1.00012 1.21084 0.97906 0.86288 0.84820 0.89193 1.86611 1.67957 1.66498 1.15222 1.25521 1.08240 1.00131 0.99436 1.20375 1.02406 0.95909 0.99051 1.20387 1.03315 0.93876 0.99317 1.25968 1.07748 1.03717 0.97315 1.84053 1.64071 0.98062 1.17738 0.94014 0.95798 0.88602 0.96498 0.92947 0.96365 0.89238 0.94497 0.93786 0.92593 0.78061 0.84135 0.81803 0.79033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.13 11.01 113.37 1.25 2.38 16 2 O -0.42 -18.29 10.41 -148.98 -1.55 -19.84 16 3 C 0.07 3.52 5.45 71.98 0.39 3.91 16 4 C 0.19 9.27 5.35 86.38 0.46 9.73 16 5 N -0.60 -29.68 2.44 -701.99 -1.71 -31.39 16 6 C -0.24 -13.04 9.75 84.03 0.82 -12.22 16 7 H 0.07 3.85 7.84 -2.91 -0.02 3.83 16 8 C -0.06 -3.10 5.14 84.86 0.44 -2.67 16 9 N -0.93 -51.62 7.40 21.65 0.16 -51.46 16 10 Si 0.97 44.65 29.56 68.60 2.03 46.68 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 12 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 14 C 0.14 5.95 5.21 86.38 0.45 6.40 16 15 C 0.16 6.09 3.62 29.85 0.11 6.20 16 16 H 0.09 3.74 8.12 -2.39 -0.02 3.72 16 17 O -0.56 -21.28 13.06 -148.98 -1.95 -23.22 16 18 C -0.22 -6.64 5.48 24.59 0.13 -6.50 16 19 C -0.15 -4.05 10.04 21.22 0.21 -3.83 16 20 C -0.14 -3.04 10.18 21.22 0.22 -2.83 16 21 C -0.21 -4.36 11.23 66.72 0.75 -3.61 16 22 S 0.10 2.46 22.64 -56.49 -1.28 1.18 16 23 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.05 2.85 5.99 -2.39 -0.01 2.83 16 28 H 0.02 0.84 7.85 -2.39 -0.02 0.83 16 29 H 0.09 4.99 5.86 -2.39 -0.01 4.98 16 30 H 0.24 13.33 8.31 -92.71 -0.77 12.56 16 31 H 0.04 1.87 8.08 -2.38 -0.02 1.85 16 32 H 0.06 2.29 7.87 -2.39 -0.02 2.27 16 33 H 0.37 11.98 8.45 -74.06 -0.63 11.36 16 34 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 35 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 36 H 0.19 2.63 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -61.32 314.40 1.38 -59.95 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.45 Total: 21.16 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 5.23 Total: -3.04 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -1.55 Total: -82.86 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -3.50 Total: -43.06 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -1.28 Total: 1.18 kcal Total: -61.32 1.38 -59.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687016500.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.490 kcal (2) G-P(sol) polarization free energy of solvation -61.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds