Wall clock time and date at job start Mon Mar 30 2020 04:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30589 * 1 3 3 Si 1.86794 * 120.00398 * 2 1 4 4 H 1.48500 * 109.47235 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47326 * 300.00017 * 3 2 1 6 6 H 1.48500 * 109.47168 * 59.99863 * 3 2 1 7 7 C 1.40349 * 119.99446 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99970 * 179.97438 * 7 2 1 9 9 C 1.40189 * 120.00259 * 0.02562 * 7 2 1 10 10 N 1.32469 * 125.30427 * 0.17934 * 9 7 2 11 11 C 1.33972 * 109.78042 * 180.23368 * 10 9 7 12 12 C 1.40530 * 133.19594 * 179.76144 * 11 10 9 13 13 C 1.36354 * 119.84928 * 180.02562 * 12 11 10 14 14 C 1.39036 * 120.76195 * 359.97438 * 13 12 11 15 15 C 1.37969 * 120.57309 * 0.02562 * 14 13 12 16 16 C 1.38716 * 119.76256 * 359.97438 * 15 14 13 17 17 N 1.37849 * 125.30454 * 179.97438 * 9 7 2 18 18 C 1.46502 * 126.54012 * 0.03517 * 17 9 7 19 19 H 1.08997 * 110.43963 * 178.60370 * 18 17 9 20 20 C 1.54627 * 110.59758 * 55.98214 * 18 17 9 21 21 C 1.54480 * 101.76536 * 216.46851 * 20 18 17 22 22 N 1.46766 * 105.47221 * 25.41761 * 21 20 18 23 23 C 1.34413 * 111.30157 * 342.98130 * 22 21 20 24 24 O 1.21279 * 124.94390 * 180.66992 * 23 22 21 25 25 H 0.97003 * 119.99544 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.07474 * 359.97438 * 12 11 10 27 27 H 1.08005 * 119.61884 * 179.97438 * 13 12 11 28 28 H 1.08001 * 119.71492 * 180.02562 * 14 13 12 29 29 H 1.07991 * 120.11851 * 180.02562 * 15 14 13 30 30 H 1.09003 * 110.96695 * 334.58877 * 20 18 17 31 31 H 1.08996 * 110.96861 * 98.31648 * 20 18 17 32 32 H 1.09003 * 110.24307 * 144.41135 * 21 20 18 33 33 H 1.08997 * 110.24549 * 266.41657 * 21 20 18 34 34 H 0.96999 * 124.34769 * 162.98345 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2400 1.6176 0.0000 4 1 3.7000 1.3462 0.0006 5 1 1.8813 2.3964 -1.2125 6 1 1.8813 2.3964 1.2125 7 6 2.0075 -1.2155 0.0005 8 1 3.0876 -1.2156 0.0001 9 6 1.3065 -2.4296 0.0005 10 7 -0.0125 -2.5520 -0.0033 11 6 -0.3475 -3.8491 0.0031 12 6 -1.5800 -4.5243 0.0070 13 6 -1.6069 -5.8876 0.0141 14 6 -0.4265 -6.6222 0.0170 15 6 0.7970 -5.9844 0.0133 16 6 0.8510 -4.5983 0.0060 17 7 1.8824 -3.6820 0.0005 18 6 3.3162 -3.9828 0.0013 19 1 3.4791 -5.0602 0.0260 20 6 4.0142 -3.3023 1.2015 21 6 5.3748 -2.9022 0.5893 22 7 5.1322 -2.7713 -0.8523 23 6 3.9855 -3.3739 -1.2111 24 8 3.5530 -3.4262 -2.3430 25 1 -0.4849 0.8401 -0.0004 26 1 -2.5037 -3.9647 0.0053 27 1 -2.5562 -6.4027 0.0176 28 1 -0.4676 -7.7014 0.0222 29 1 1.7093 -6.5623 0.0151 30 1 3.4594 -2.4225 1.5278 31 1 4.1475 -4.0043 2.0246 32 1 5.7097 -1.9511 1.0033 33 1 6.1162 -3.6786 0.7780 34 1 5.7234 -2.3093 -1.4670 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691772891.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:07 Heat of formation + Delta-G solvation = 39.804960 kcal Electronic energy + Delta-G solvation = -20895.836795 eV Core-core repulsion = 17794.171712 eV Total energy + Delta-G solvation = -3101.665082 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.85633 -39.41181 -36.21968 -35.84120 -33.64251 -32.72775 -30.18154 -28.79647 -28.57386 -26.50330 -25.84175 -21.96181 -21.41329 -21.04667 -20.70820 -18.91250 -17.34472 -16.97223 -16.58430 -15.89624 -15.46121 -14.86821 -14.20965 -14.02915 -14.01125 -13.50166 -13.17626 -12.95639 -12.79137 -12.67590 -12.33204 -11.88690 -11.61915 -11.43912 -11.12522 -11.00329 -10.63889 -10.54053 -10.35319 -10.19515 -9.82224 -9.27740 -8.93030 -8.89360 -7.93205 -7.24138 -6.87777 -6.70424 -4.65202 2.25410 2.66259 2.83216 2.95612 2.98292 3.02520 3.51416 3.75592 3.99467 4.08100 4.61132 4.72178 5.02012 5.06209 5.15243 5.39450 5.52071 5.57235 5.65323 5.85910 5.94648 6.02795 6.28471 6.39564 6.53786 6.71111 6.83057 6.96042 7.00704 7.20566 7.23650 7.43867 7.61271 7.68365 7.89052 7.93537 8.29242 8.54452 8.60399 8.96314 9.92512 10.18695 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.009416 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.272700 B = 2972.866982 C = 4337.079463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.077 3.923 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.438 4.438 8 H 0.089 0.911 9 C 0.426 3.574 10 N -0.533 5.533 11 C 0.114 3.886 12 C -0.129 4.129 13 C -0.122 4.122 14 C -0.181 4.181 15 C -0.101 4.101 16 C -0.002 4.002 17 N -0.523 5.523 18 C 0.132 3.868 19 H 0.113 0.887 20 C -0.152 4.152 21 C 0.108 3.892 22 N -0.733 5.733 23 C 0.519 3.481 24 O -0.513 6.513 25 H 0.279 0.721 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.438 -3.619 3.994 10.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.151 4.151 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.475 4.475 8 H 0.107 0.893 9 C 0.190 3.810 10 N -0.257 5.257 11 C -0.014 4.014 12 C -0.150 4.150 13 C -0.142 4.142 14 C -0.202 4.202 15 C -0.123 4.123 16 C -0.109 4.109 17 N -0.220 5.220 18 C 0.022 3.978 19 H 0.131 0.869 20 C -0.191 4.191 21 C -0.018 4.018 22 N -0.390 5.390 23 C 0.302 3.698 24 O -0.386 6.386 25 H 0.090 0.910 26 H 0.127 0.873 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 8.458 -2.922 3.448 9.590 hybrid contribution 1.363 0.215 -0.285 1.409 sum 9.821 -2.706 3.164 10.667 Atomic orbital electron populations 1.69981 1.07154 1.28517 1.27709 1.25862 0.94931 1.00756 0.93551 0.86155 0.80404 0.80769 0.78855 1.18464 1.19573 1.19521 1.18586 0.93972 0.87419 1.47565 0.89338 1.20428 0.87155 0.83190 0.90253 1.71398 1.08786 1.12796 1.32691 1.19527 0.91947 0.91443 0.98441 1.19777 0.94986 0.93202 1.07037 1.20221 0.96957 0.93503 1.03554 1.20281 0.91806 0.97809 1.10259 1.19579 0.97138 0.90187 1.05407 1.18829 0.89586 0.91451 1.11018 1.45175 1.01845 1.06707 1.68247 1.21343 0.81614 1.00659 0.94187 0.86917 1.23174 0.95095 1.03617 0.97197 1.22000 0.97415 1.02012 0.80324 1.46035 1.24922 1.57873 1.10215 1.20988 0.80802 0.77937 0.90030 1.90738 1.66388 1.58978 1.22506 0.90964 0.87325 0.87752 0.87772 0.88682 0.87024 0.89183 0.90069 0.91248 0.75315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.97 11.85 55.57 0.66 -18.31 16 2 C 0.08 1.90 5.50 -17.29 -0.10 1.81 16 3 Si 0.91 17.93 29.56 -169.99 -5.03 12.91 16 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.44 -11.10 7.51 -38.06 -0.29 -11.39 16 8 H 0.09 2.03 5.52 -52.48 -0.29 1.74 16 9 C 0.43 11.51 6.89 -155.68 -1.07 10.44 16 10 N -0.53 -15.53 9.33 -10.31 -0.10 -15.63 16 11 C 0.11 3.03 7.21 -84.89 -0.61 2.42 16 12 C -0.13 -3.00 10.07 -39.40 -0.40 -3.40 16 13 C -0.12 -2.44 9.96 -39.96 -0.40 -2.84 16 14 C -0.18 -3.51 10.04 -39.38 -0.40 -3.91 16 15 C -0.10 -2.13 9.91 -39.50 -0.39 -2.52 16 16 C 0.00 -0.05 6.88 -83.75 -0.58 -0.63 16 17 N -0.52 -12.44 2.79 -106.42 -0.30 -12.74 16 18 C 0.13 2.44 3.59 -67.94 -0.24 2.20 16 19 H 0.11 1.84 7.69 -51.93 -0.40 1.44 16 20 C -0.15 -2.18 6.15 -25.10 -0.15 -2.34 16 21 C 0.11 1.19 7.78 -3.12 -0.02 1.17 16 22 N -0.73 -10.50 6.14 -59.20 -0.36 -10.86 16 23 C 0.52 10.13 6.54 -10.86 -0.07 10.05 16 24 O -0.51 -12.48 18.02 5.56 0.10 -12.38 16 25 H 0.28 6.69 8.29 -40.82 -0.34 6.35 16 26 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 27 H 0.10 1.74 8.06 -52.48 -0.42 1.31 16 28 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.10 1.72 7.78 -52.49 -0.41 1.31 16 30 H 0.11 1.92 5.83 -51.93 -0.30 1.61 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.41 5.00 8.96 -40.82 -0.37 4.63 16 LS Contribution 289.73 15.07 4.37 4.37 Total: -1.00 -34.19 289.73 -8.81 -43.00 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -3.44 Total: 8.59 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -4.72 Total: 1.06 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.10 Total: -57.54 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.10 Total: -12.38 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.19 -8.81 -43.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691772891.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.801 kcal (2) G-P(sol) polarization free energy of solvation -34.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds