Wall clock time and date at job start Mon Mar 30 2020 04:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30589 * 1 3 3 Si 1.86794 * 120.00398 * 2 1 4 4 H 1.48500 * 109.47235 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47326 * 300.00017 * 3 2 1 6 6 H 1.48500 * 109.47168 * 59.99863 * 3 2 1 7 7 C 1.40349 * 119.99446 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99970 * 179.97438 * 7 2 1 9 9 C 1.40189 * 120.00259 * 0.02562 * 7 2 1 10 10 N 1.32469 * 125.30427 * 0.17934 * 9 7 2 11 11 C 1.33972 * 109.78042 * 180.23368 * 10 9 7 12 12 C 1.40530 * 133.19594 * 179.76144 * 11 10 9 13 13 C 1.36354 * 119.84928 * 180.02562 * 12 11 10 14 14 C 1.39036 * 120.76195 * 359.97438 * 13 12 11 15 15 C 1.37969 * 120.57309 * 0.02562 * 14 13 12 16 16 C 1.38716 * 119.76256 * 359.97438 * 15 14 13 17 17 N 1.37849 * 125.30454 * 179.97438 * 9 7 2 18 18 C 1.46502 * 126.54012 * 0.03517 * 17 9 7 19 19 H 1.08997 * 110.43963 * 178.60370 * 18 17 9 20 20 C 1.54627 * 110.59758 * 55.98214 * 18 17 9 21 21 C 1.54480 * 101.76536 * 216.46851 * 20 18 17 22 22 N 1.46766 * 105.47221 * 25.41761 * 21 20 18 23 23 C 1.34413 * 111.30157 * 342.98130 * 22 21 20 24 24 O 1.21279 * 124.94390 * 180.66992 * 23 22 21 25 25 H 0.97003 * 119.99544 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.07474 * 359.97438 * 12 11 10 27 27 H 1.08005 * 119.61884 * 179.97438 * 13 12 11 28 28 H 1.08001 * 119.71492 * 180.02562 * 14 13 12 29 29 H 1.07991 * 120.11851 * 180.02562 * 15 14 13 30 30 H 1.09003 * 110.96695 * 334.58877 * 20 18 17 31 31 H 1.08996 * 110.96861 * 98.31648 * 20 18 17 32 32 H 1.09003 * 110.24307 * 144.41135 * 21 20 18 33 33 H 1.08997 * 110.24549 * 266.41657 * 21 20 18 34 34 H 0.96999 * 124.34769 * 162.98345 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2400 1.6176 0.0000 4 1 3.7000 1.3462 0.0006 5 1 1.8813 2.3964 -1.2125 6 1 1.8813 2.3964 1.2125 7 6 2.0075 -1.2155 0.0005 8 1 3.0876 -1.2156 0.0001 9 6 1.3065 -2.4296 0.0005 10 7 -0.0125 -2.5520 -0.0033 11 6 -0.3475 -3.8491 0.0031 12 6 -1.5800 -4.5243 0.0070 13 6 -1.6069 -5.8876 0.0141 14 6 -0.4265 -6.6222 0.0170 15 6 0.7970 -5.9844 0.0133 16 6 0.8510 -4.5983 0.0060 17 7 1.8824 -3.6820 0.0005 18 6 3.3162 -3.9828 0.0013 19 1 3.4791 -5.0602 0.0260 20 6 4.0142 -3.3023 1.2015 21 6 5.3748 -2.9022 0.5893 22 7 5.1322 -2.7713 -0.8523 23 6 3.9855 -3.3739 -1.2111 24 8 3.5530 -3.4262 -2.3430 25 1 -0.4849 0.8401 -0.0004 26 1 -2.5037 -3.9647 0.0053 27 1 -2.5562 -6.4027 0.0176 28 1 -0.4676 -7.7014 0.0222 29 1 1.7093 -6.5623 0.0151 30 1 3.4594 -2.4225 1.5278 31 1 4.1475 -4.0043 2.0246 32 1 5.7097 -1.9511 1.0033 33 1 6.1162 -3.6786 0.7780 34 1 5.7234 -2.3093 -1.4670 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691772891.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:07 Heat of formation + Delta-G solvation = 14.774740 kcal Electronic energy + Delta-G solvation = -20896.922186 eV Core-core repulsion = 17794.171712 eV Total energy + Delta-G solvation = -3102.750474 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.49618 -40.91694 -37.84555 -37.35467 -35.43404 -34.36649 -31.70137 -30.54840 -30.10068 -27.97057 -27.57623 -23.24832 -23.14126 -22.59103 -22.35395 -20.54964 -19.00985 -18.40455 -18.14088 -17.55222 -16.87256 -16.57291 -15.72509 -15.67572 -15.51901 -14.81715 -14.71085 -14.56471 -14.44252 -14.32277 -13.59561 -13.30587 -13.11631 -13.03741 -12.66961 -12.43666 -12.27336 -12.12175 -11.94012 -11.83683 -11.48750 -11.02767 -10.61274 -10.08644 -9.83223 -9.02856 -8.64240 -8.51762 -6.55508 0.50820 0.96900 1.32073 1.37706 1.41298 1.53408 2.11417 2.23033 2.34886 2.50606 3.11586 3.40918 3.54848 3.67512 3.83075 3.93092 4.00118 4.30223 4.35692 4.49526 4.67038 4.76727 4.88582 4.94110 4.95355 5.13121 5.15760 5.27578 5.53534 5.66042 5.79142 5.91230 5.92207 5.99489 6.13061 6.21870 6.52366 6.76623 7.14433 7.21578 8.06279 8.41217 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.009416 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.272700 B = 2972.866982 C = 4337.079463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.026 3.974 3 Si 0.993 3.007 4 H -0.239 1.239 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.458 4.458 8 H 0.106 0.894 9 C 0.399 3.601 10 N -0.587 5.587 11 C 0.055 3.945 12 C -0.150 4.150 13 C -0.115 4.115 14 C -0.163 4.163 15 C -0.107 4.107 16 C -0.023 4.023 17 N -0.524 5.524 18 C 0.116 3.884 19 H 0.135 0.865 20 C -0.145 4.145 21 C 0.111 3.889 22 N -0.715 5.715 23 C 0.508 3.492 24 O -0.578 6.578 25 H 0.282 0.718 26 H 0.103 0.897 27 H 0.145 0.855 28 H 0.152 0.848 29 H 0.128 0.872 30 H 0.080 0.920 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.137 -5.232 5.173 14.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.197 4.197 3 Si 0.812 3.188 4 H -0.161 1.161 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.495 4.495 8 H 0.124 0.876 9 C 0.161 3.839 10 N -0.312 5.312 11 C -0.070 4.070 12 C -0.172 4.172 13 C -0.135 4.135 14 C -0.183 4.183 15 C -0.128 4.128 16 C -0.130 4.130 17 N -0.219 5.219 18 C 0.008 3.992 19 H 0.152 0.848 20 C -0.184 4.184 21 C -0.013 4.013 22 N -0.370 5.370 23 C 0.293 3.707 24 O -0.456 6.456 25 H 0.093 0.907 26 H 0.121 0.879 27 H 0.163 0.837 28 H 0.170 0.830 29 H 0.146 0.854 30 H 0.098 0.902 31 H 0.142 0.858 32 H 0.125 0.875 33 H 0.134 0.866 34 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 11.224 -4.572 4.676 12.990 hybrid contribution 0.465 0.479 -0.626 0.915 sum 11.690 -4.093 4.049 13.031 Atomic orbital electron populations 1.70140 1.09374 1.29662 1.29897 1.27033 0.95687 1.04709 0.92244 0.85003 0.79859 0.75208 0.78746 1.16134 1.20037 1.18447 1.19004 0.94812 0.87528 1.48179 0.87599 1.20766 0.87262 0.84864 0.91038 1.71244 1.10785 1.14811 1.34376 1.20100 0.94243 0.91530 1.01177 1.20064 0.93996 0.94958 1.08148 1.20680 0.99348 0.92078 1.01394 1.20902 0.90692 1.00116 1.06562 1.20068 0.99393 0.88867 1.04489 1.19304 0.89203 0.92916 1.11566 1.45294 1.03766 1.05552 1.67337 1.21853 0.79172 1.02463 0.95726 0.84766 1.23193 0.95772 1.02745 0.96664 1.22354 0.96310 1.05022 0.77565 1.46039 1.23170 1.55733 1.12107 1.21251 0.81926 0.78199 0.89330 1.90695 1.68360 1.61773 1.24811 0.90740 0.87911 0.83732 0.83024 0.85397 0.90159 0.85774 0.87476 0.86626 0.73972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.53 11.85 21.89 0.26 -43.27 16 2 C 0.03 1.32 5.50 85.39 0.47 1.79 16 3 Si 0.99 37.31 29.56 68.60 2.03 39.34 16 4 H -0.24 -7.98 7.11 99.48 0.71 -7.27 16 5 H -0.28 -10.42 7.11 99.48 0.71 -9.71 16 6 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 7 C -0.46 -24.08 7.51 23.26 0.17 -23.90 16 8 H 0.11 4.90 5.52 -2.91 -0.02 4.89 16 9 C 0.40 22.70 6.89 133.69 0.92 23.62 16 10 N -0.59 -36.56 9.33 -186.52 -1.74 -38.30 16 11 C 0.05 3.07 7.21 40.14 0.29 3.36 16 12 C -0.15 -7.24 10.07 22.39 0.23 -7.01 16 13 C -0.11 -4.38 9.96 22.02 0.22 -4.16 16 14 C -0.16 -5.75 10.04 22.40 0.22 -5.53 16 15 C -0.11 -4.27 9.91 22.32 0.22 -4.05 16 16 C -0.02 -1.13 6.88 39.05 0.27 -0.86 16 17 N -0.52 -25.52 2.79 -490.60 -1.37 -26.89 16 18 C 0.12 4.18 3.59 44.99 0.16 4.34 16 19 H 0.13 4.10 7.69 -2.39 -0.02 4.08 16 20 C -0.15 -3.82 6.15 31.65 0.19 -3.62 16 21 C 0.11 1.98 7.78 86.83 0.68 2.65 16 22 N -0.71 -18.73 6.14 -459.80 -2.82 -21.56 16 23 C 0.51 19.65 6.54 87.90 0.58 20.22 16 24 O -0.58 -28.96 18.02 -3.03 -0.05 -29.01 16 25 H 0.28 14.44 8.29 -92.71 -0.77 13.67 16 26 H 0.10 4.84 8.06 -2.91 -0.02 4.82 16 27 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 28 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 29 H 0.13 4.18 7.78 -2.92 -0.02 4.16 16 30 H 0.08 2.69 5.83 -2.39 -0.01 2.68 16 31 H 0.12 2.37 8.14 -2.39 -0.02 2.36 16 32 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.42 9.23 8.96 -92.71 -0.83 8.40 16 Total: -1.00 -83.70 289.73 1.24 -82.45 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.32 Total: 30.39 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 4.62 Total: 6.84 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -5.67 Total: -130.01 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.05 Total: -29.01 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Total: -83.70 1.24 -82.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691772891.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.228 kcal (2) G-P(sol) polarization free energy of solvation -83.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds