Wall clock time and date at job start Mon Mar 30 2020 04:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30584 * 1 3 3 Si 1.86805 * 119.99883 * 2 1 4 4 H 1.48495 * 109.47217 * 264.98774 * 3 2 1 5 5 H 1.48500 * 109.46903 * 144.99000 * 3 2 1 6 6 H 1.48502 * 109.46803 * 24.99015 * 3 2 1 7 7 C 1.40348 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99982 * 186.53728 * 7 2 1 9 9 C 1.40184 * 119.99792 * 6.54224 * 7 2 1 10 10 N 1.32461 * 125.30633 * 5.92202 * 9 7 2 11 11 C 1.33977 * 109.78135 * 179.82418 * 10 9 7 12 12 C 1.40538 * 133.19571 * 180.09602 * 11 10 9 13 13 C 1.36357 * 119.84544 * 180.36065 * 12 11 10 14 14 C 1.39037 * 120.76248 * 0.02562 * 13 12 11 15 15 C 1.37969 * 120.57486 * 359.97438 * 14 13 12 16 16 C 1.38716 * 119.76372 * 359.97438 * 15 14 13 17 17 N 1.37861 * 125.30295 * 186.22496 * 9 7 2 18 18 C 1.46497 * 126.53705 * 0.03330 * 17 9 7 19 19 H 1.08999 * 110.43277 * 177.43647 * 18 17 9 20 20 C 1.54630 * 110.48867 * 299.97800 * 18 17 9 21 21 C 1.54477 * 101.76434 * 143.47320 * 20 18 17 22 22 N 1.46755 * 105.47918 * 334.58651 * 21 20 18 23 23 C 1.34430 * 111.29891 * 17.01182 * 22 21 20 24 24 O 1.21279 * 124.94139 * 179.62658 * 23 22 21 25 25 H 0.97003 * 120.00248 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.07396 * 0.38507 * 12 11 10 27 27 H 1.08007 * 119.61551 * 179.97438 * 13 12 11 28 28 H 1.07999 * 119.71436 * 179.97438 * 14 13 12 29 29 H 1.07999 * 120.11593 * 179.97438 * 15 14 13 30 30 H 1.08996 * 110.96978 * 261.59469 * 20 18 17 31 31 H 1.09006 * 110.96863 * 25.35742 * 20 18 17 32 32 H 1.09001 * 110.24485 * 93.58743 * 21 20 18 33 33 H 1.09001 * 110.24845 * 215.57762 * 21 20 18 34 34 H 0.96997 * 124.35778 * 197.01613 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2398 1.6178 0.0000 4 1 2.5933 1.9853 -1.3947 5 1 3.4804 1.4731 0.8033 6 1 1.3883 2.6809 0.5915 7 6 2.0076 -1.2154 0.0005 8 1 3.0823 -1.2184 0.1070 9 6 1.3135 -2.4256 -0.1372 10 7 0.0174 -2.5408 -0.3848 11 6 -0.3168 -3.8361 -0.4583 12 6 -1.5299 -4.5046 -0.6960 13 6 -1.5632 -5.8678 -0.7047 14 6 -0.4084 -6.6088 -0.4800 15 6 0.7956 -5.9777 -0.2441 16 6 0.8558 -4.5919 -0.2313 17 7 1.8725 -3.6812 -0.0304 18 6 3.2780 -3.9897 0.2443 19 1 3.4238 -5.0675 0.3171 20 6 4.1878 -3.3936 -0.8549 21 6 5.4250 -2.9592 -0.0383 22 7 4.9338 -2.7315 1.3258 23 6 3.7322 -3.3041 1.5140 24 8 3.1035 -3.2748 2.5507 25 1 -0.4851 0.8401 -0.0004 26 1 -2.4336 -3.9400 -0.8718 27 1 -2.4976 -6.3777 -0.8874 28 1 -0.4542 -7.6877 -0.4903 29 1 1.6880 -6.5605 -0.0701 30 1 4.4537 -4.1497 -1.5935 31 1 3.7134 -2.5353 -1.3307 32 1 6.1757 -3.7494 -0.0418 33 1 5.8429 -2.0393 -0.4472 34 1 5.4143 -2.2320 2.0044 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691772892.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:10 Heat of formation + Delta-G solvation = 39.385672 kcal Electronic energy + Delta-G solvation = -20903.834941 eV Core-core repulsion = 17802.151677 eV Total energy + Delta-G solvation = -3101.683264 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.85210 -39.40149 -36.19207 -35.84396 -33.63584 -32.72217 -30.17087 -28.81841 -28.56242 -26.49442 -25.83620 -21.95979 -21.40617 -21.04386 -20.72117 -18.90581 -17.32498 -16.96061 -16.59081 -15.88695 -15.43982 -14.88036 -14.19826 -14.03930 -13.99988 -13.49074 -13.18986 -12.96061 -12.76445 -12.68054 -12.34346 -11.88958 -11.63568 -11.41823 -11.12194 -11.01659 -10.66192 -10.49664 -10.39061 -10.20295 -9.79467 -9.25405 -8.93383 -8.87900 -7.93566 -7.24068 -6.88044 -6.71468 -4.63656 2.25503 2.66636 2.84725 2.97082 2.98748 3.01986 3.53098 3.76421 3.99899 4.08101 4.61202 4.71407 5.00510 5.06195 5.14969 5.39382 5.52451 5.56553 5.65169 5.85720 5.92862 6.02161 6.24510 6.38843 6.53742 6.70976 6.83006 6.97264 7.02365 7.22454 7.23692 7.44101 7.61198 7.68892 7.89017 7.93829 8.29608 8.56661 8.61205 8.96656 9.92326 10.19397 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.015452 B = 0.009396 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.625054 B = 2979.146525 C = 4322.462835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.079 3.921 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.263 1.263 6 H -0.274 1.274 7 C -0.439 4.439 8 H 0.088 0.912 9 C 0.428 3.572 10 N -0.536 5.536 11 C 0.115 3.885 12 C -0.129 4.129 13 C -0.121 4.121 14 C -0.181 4.181 15 C -0.102 4.102 16 C -0.003 4.003 17 N -0.523 5.523 18 C 0.131 3.869 19 H 0.113 0.887 20 C -0.150 4.150 21 C 0.108 3.892 22 N -0.734 5.734 23 C 0.521 3.479 24 O -0.510 6.510 25 H 0.280 0.720 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.031 -3.914 -2.616 11.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.335 5.335 2 C -0.149 4.149 3 Si 0.738 3.262 4 H -0.190 1.190 5 H -0.187 1.187 6 H -0.198 1.198 7 C -0.476 4.476 8 H 0.106 0.894 9 C 0.192 3.808 10 N -0.260 5.260 11 C -0.013 4.013 12 C -0.151 4.151 13 C -0.142 4.142 14 C -0.202 4.202 15 C -0.123 4.123 16 C -0.109 4.109 17 N -0.220 5.220 18 C 0.022 3.978 19 H 0.131 0.869 20 C -0.189 4.189 21 C -0.018 4.018 22 N -0.391 5.391 23 C 0.304 3.696 24 O -0.383 6.383 25 H 0.092 0.908 26 H 0.127 0.873 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 8.963 -3.171 -2.203 9.759 hybrid contribution 1.296 0.226 0.439 1.387 sum 10.259 -2.946 -1.764 10.818 Atomic orbital electron populations 1.69936 1.07246 1.28772 1.27541 1.25843 0.94884 1.00762 0.93415 0.86223 0.80188 0.80337 0.79433 1.19024 1.18670 1.19850 1.18514 0.94468 0.87648 1.46944 0.89437 1.20401 0.87216 0.83066 0.90074 1.71352 1.09445 1.13112 1.32047 1.19513 0.92184 0.91371 0.98202 1.19776 0.95337 0.93252 1.06697 1.20220 0.97206 0.93472 1.03304 1.20278 0.92490 0.97808 1.09637 1.19578 0.97467 0.90197 1.05080 1.18827 0.90269 0.91524 1.10327 1.45189 1.04509 1.06726 1.65599 1.21345 0.82360 1.00472 0.93669 0.86907 1.23149 0.94733 1.03506 0.97522 1.21990 0.96420 1.01532 0.81810 1.46024 1.21432 1.56794 1.14886 1.20892 0.80702 0.78431 0.89529 1.90742 1.57323 1.59596 1.30632 0.90845 0.87339 0.87759 0.87779 0.88677 0.89165 0.87509 0.91251 0.90103 0.75287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.21 11.92 55.57 0.66 -18.55 16 2 C 0.08 1.97 5.49 -17.29 -0.09 1.88 16 3 Si 0.91 18.06 29.57 -169.99 -5.03 13.04 16 4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.44 -11.19 7.60 -38.06 -0.29 -11.48 16 8 H 0.09 2.01 5.52 -52.49 -0.29 1.72 16 9 C 0.43 11.61 6.83 -155.67 -1.06 10.55 16 10 N -0.54 -15.64 9.41 -10.30 -0.10 -15.73 16 11 C 0.11 3.06 7.21 -84.88 -0.61 2.45 16 12 C -0.13 -3.01 10.07 -39.39 -0.40 -3.41 16 13 C -0.12 -2.43 9.96 -39.96 -0.40 -2.83 16 14 C -0.18 -3.51 10.04 -39.38 -0.40 -3.91 16 15 C -0.10 -2.12 9.91 -39.50 -0.39 -2.51 16 16 C 0.00 -0.07 6.88 -83.75 -0.58 -0.65 16 17 N -0.52 -12.45 2.79 -106.42 -0.30 -12.75 16 18 C 0.13 2.43 3.60 -67.94 -0.24 2.19 16 19 H 0.11 1.84 7.70 -51.93 -0.40 1.44 16 20 C -0.15 -2.14 6.18 -25.10 -0.16 -2.29 16 21 C 0.11 1.18 7.78 -3.13 -0.02 1.16 16 22 N -0.73 -10.54 6.09 -59.21 -0.36 -10.90 16 23 C 0.52 10.22 6.28 -10.86 -0.07 10.15 16 24 O -0.51 -12.52 18.02 5.56 0.10 -12.42 16 25 H 0.28 6.81 8.29 -40.82 -0.34 6.47 16 26 H 0.11 2.40 8.06 -52.49 -0.42 1.98 16 27 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 28 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.10 1.71 7.79 -52.49 -0.41 1.30 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.11 1.80 6.20 -51.93 -0.32 1.48 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.41 5.05 8.96 -40.82 -0.37 4.68 16 LS Contribution 290.00 15.07 4.37 4.37 Total: -1.00 -34.38 290.00 -8.81 -43.20 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -3.46 Total: 8.46 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -4.71 Total: 1.29 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -0.09 Total: -57.93 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.10 Total: -12.42 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.38 -8.81 -43.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691772892.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.585 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds