Wall clock time and date at job start Mon Mar 30 2020 04:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46495 * 109.46917 * 258.50777 * 3 2 1 5 5 C 1.36877 * 120.00089 * 267.13690 * 4 3 2 6 6 H 1.07993 * 120.00700 * 206.80940 * 5 4 3 7 7 C 1.39048 * 119.99354 * 26.80625 * 5 4 3 8 8 N 1.31365 * 120.00554 * 25.91218 * 7 5 4 9 9 Si 1.86808 * 119.99744 * 205.91244 * 7 5 4 10 10 H 1.48493 * 109.47107 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46949 * 120.00087 * 9 7 5 12 12 H 1.48502 * 109.46833 * 239.99833 * 9 7 5 13 13 C 1.34778 * 120.00581 * 87.14139 * 4 3 2 14 14 O 1.21595 * 119.99729 * 5.47285 * 13 4 3 15 15 C 1.47727 * 120.00160 * 185.47749 * 13 4 3 16 16 C 1.39685 * 120.13783 * 44.87002 * 15 13 4 17 17 C 1.37912 * 119.82029 * 179.97438 * 16 15 13 18 18 C 1.38390 * 120.17969 * 0.25221 * 17 16 15 19 19 C 1.38324 * 120.34960 * 359.48801 * 18 17 16 20 20 C 1.38177 * 120.05012 * 0.51413 * 19 18 17 21 21 C 1.51165 * 108.33171 * 179.74207 * 20 19 18 22 22 N 1.48068 * 105.64899 * 342.51897 * 21 20 19 23 23 C 1.48053 * 103.84659 * 27.55711 * 22 21 20 24 24 H 1.08988 * 109.47462 * 138.50283 * 3 2 1 25 25 H 1.09005 * 109.46877 * 18.49861 * 3 2 1 26 26 H 0.96995 * 120.00413 * 179.97438 * 8 7 5 27 27 H 1.07993 * 120.08829 * 0.02562 * 16 15 13 28 28 H 1.08006 * 119.91461 * 179.97438 * 17 16 15 29 29 H 1.07995 * 119.82573 * 179.74657 * 18 17 16 30 30 H 1.08997 * 110.21172 * 101.56327 * 21 20 19 31 31 H 1.09001 * 110.21202 * 223.47440 * 21 20 19 32 32 H 1.00902 * 110.99306 * 146.89812 * 22 21 20 33 33 H 1.08998 * 110.20695 * 213.37981 * 23 22 21 34 34 H 1.08998 * 110.20212 * 91.47640 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0962 0.2761 1.3535 5 6 3.3795 1.5610 1.7306 6 1 4.1099 1.7483 2.5037 7 6 2.7269 2.6251 1.1182 8 7 1.5384 2.4489 0.5870 9 14 3.5403 4.3055 1.0507 10 1 4.8661 4.2407 1.7162 11 1 3.7164 4.7136 -0.3662 12 1 2.6844 5.2980 1.7489 13 6 3.2664 -0.7357 2.2275 14 8 3.1108 -1.8856 1.8641 15 6 3.6418 -0.4477 3.6269 16 6 2.9966 0.5720 4.3305 17 6 3.3519 0.8350 5.6368 18 6 4.3484 0.0952 6.2492 19 6 4.9884 -0.9197 5.5610 20 6 4.6420 -1.1934 4.2516 21 6 5.5025 -2.3353 3.7609 22 7 6.6394 -2.4135 4.7062 23 6 6.0873 -1.8745 5.9698 24 1 2.9710 0.7704 -0.6808 25 1 2.9718 -0.9738 -0.3261 26 1 1.0830 3.1913 0.1601 27 1 2.2210 1.1523 3.8530 28 1 2.8542 1.6233 6.1822 29 1 4.6249 0.3087 7.2711 30 1 4.9362 -3.2665 3.7750 31 1 5.8638 -2.1286 2.7535 32 1 6.9469 -3.3674 4.8237 33 1 6.8618 -1.3427 6.5225 34 1 5.6779 -2.6822 6.5765 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692826684.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:08 Heat of formation + Delta-G solvation = 44.179410 kcal Electronic energy + Delta-G solvation = -20476.924043 eV Core-core repulsion = 17375.448651 eV Total energy + Delta-G solvation = -3101.475392 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.13115 -38.50399 -35.90801 -35.57170 -34.36262 -31.81625 -31.21167 -29.70885 -28.02318 -26.83261 -25.10481 -23.43156 -21.69465 -20.77614 -19.35269 -18.04748 -16.57510 -16.26265 -16.18419 -15.26495 -15.16812 -14.79910 -14.56552 -14.15773 -13.60048 -13.24632 -12.87685 -12.81029 -12.67575 -12.25549 -12.12341 -11.86849 -11.74500 -11.52260 -11.28404 -11.22722 -10.92798 -10.82889 -10.70863 -10.52457 -10.23752 -9.42085 -8.96058 -8.80104 -8.27239 -8.12692 -7.93408 -6.63859 -4.18947 1.53861 1.76005 3.00452 3.14931 3.19478 3.51585 3.77964 4.02222 4.18212 4.23716 4.37849 4.68879 4.70973 4.82869 4.91727 5.38514 5.40491 5.44786 5.57097 5.65024 5.72900 5.91595 5.99108 6.14712 6.25439 6.36396 6.39549 6.43629 6.55972 6.84936 6.91752 7.03378 7.25580 7.30616 7.36561 7.42149 8.11406 8.82751 8.93941 9.14770 9.57033 10.38706 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.007176 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.615392 B = 3901.140499 C = 4635.894495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.249 3.751 3 C 0.227 3.773 4 N -0.428 5.428 5 C -0.349 4.349 6 H 0.105 0.895 7 C 0.046 3.954 8 N -0.847 5.847 9 Si 0.914 3.086 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.505 3.495 14 O -0.592 6.592 15 C -0.067 4.067 16 C -0.057 4.057 17 C -0.135 4.135 18 C -0.094 4.094 19 C -0.127 4.127 20 C -0.065 4.065 21 C 0.086 3.914 22 N -0.661 5.661 23 C 0.085 3.915 24 H 0.109 0.891 25 H 0.097 0.903 26 H 0.276 0.724 27 H 0.144 0.856 28 H 0.124 0.876 29 H 0.116 0.884 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.341 0.659 33 H 0.085 0.915 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.266 -2.806 7.255 11.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.069 4.069 3 C 0.101 3.899 4 N -0.146 5.146 5 C -0.475 4.475 6 H 0.123 0.877 7 C -0.163 4.163 8 N -0.481 5.481 9 Si 0.740 3.260 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.207 1.207 13 C 0.295 3.705 14 O -0.478 6.478 15 C -0.070 4.070 16 C -0.076 4.076 17 C -0.153 4.153 18 C -0.113 4.113 19 C -0.128 4.128 20 C -0.066 4.066 21 C -0.043 4.043 22 N -0.289 5.289 23 C -0.043 4.043 24 H 0.126 0.874 25 H 0.115 0.885 26 H 0.087 0.913 27 H 0.162 0.838 28 H 0.142 0.858 29 H 0.134 0.866 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.156 0.844 33 H 0.103 0.897 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.756 -2.646 6.690 9.870 hybrid contribution 0.016 0.566 0.301 0.641 sum 6.772 -2.080 6.991 9.953 Atomic orbital electron populations 1.80823 1.13585 1.12763 1.07955 1.28985 0.95159 0.89844 0.92928 1.18427 0.82032 1.02422 0.87063 1.43418 1.56002 1.06927 1.08273 1.19617 1.22881 0.80103 1.24948 0.87734 1.25343 0.93835 1.00101 0.96980 1.69872 1.09653 1.33770 1.34837 0.86063 0.79915 0.81526 0.78487 1.18828 1.20274 1.20714 1.18230 0.82317 0.84986 0.84961 1.90652 1.57587 1.20831 1.78742 1.19315 0.96786 0.96224 0.94714 1.21523 0.98596 0.94210 0.93246 1.20989 0.98474 1.00520 0.95300 1.20443 0.96516 0.95012 0.99309 1.20355 0.99007 0.98324 0.95097 1.20358 0.95521 0.96369 0.94387 1.21322 0.89523 0.95787 0.97654 1.63548 1.32412 1.25636 1.07349 1.21316 0.94615 0.95913 0.92501 0.87352 0.88507 0.91329 0.83816 0.85801 0.86557 0.92013 0.89029 0.84375 0.89671 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.97 18.54 42.16 0.78 -11.19 16 2 C 0.25 5.92 12.96 -20.76 -0.27 5.65 16 3 C 0.23 4.83 5.20 -6.83 -0.04 4.79 16 4 N -0.43 -9.78 2.56 -119.06 -0.31 -10.09 16 5 C -0.35 -7.95 7.12 -15.00 -0.11 -8.06 16 6 H 0.11 2.38 6.56 -52.49 -0.34 2.04 16 7 C 0.05 1.04 4.72 -17.45 -0.08 0.96 16 8 N -0.85 -20.67 9.99 55.50 0.55 -20.11 16 9 Si 0.91 18.08 29.63 -169.99 -5.04 13.04 16 10 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 11 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 12 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 13 C 0.51 11.63 7.08 -12.38 -0.09 11.55 16 14 O -0.59 -14.58 16.18 5.28 0.09 -14.49 16 15 C -0.07 -1.39 4.97 -105.00 -0.52 -1.91 16 16 C -0.06 -1.10 7.91 -39.16 -0.31 -1.41 16 17 C -0.13 -2.14 10.03 -39.64 -0.40 -2.54 16 18 C -0.09 -1.38 10.04 -39.49 -0.40 -1.78 16 19 C -0.13 -2.02 6.26 -104.36 -0.65 -2.67 16 20 C -0.06 -1.19 6.07 -103.94 -0.63 -1.83 16 21 C 0.09 1.40 6.85 -4.10 -0.03 1.37 16 22 N -0.66 -8.93 7.72 -114.02 -0.88 -9.81 16 23 C 0.09 1.09 7.46 -4.09 -0.03 1.06 16 24 H 0.11 2.16 7.39 -51.94 -0.38 1.78 16 25 H 0.10 1.86 7.44 -51.93 -0.39 1.48 16 26 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16 27 H 0.14 3.01 7.01 -52.49 -0.37 2.64 16 28 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 29 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.34 3.58 8.92 -39.29 -0.35 3.23 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 296.89 15.07 4.47 4.47 Total: -1.00 -28.82 296.89 -7.38 -36.20 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -3.50 Total: 6.79 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -3.55 Total: 5.18 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.15 Total: -51.19 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.09 Total: -14.49 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.04 Total: 13.04 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.82 -7.38 -36.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692826684.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.375 kcal (2) G-P(sol) polarization free energy of solvation -28.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds