Wall clock time and date at job start Mon Mar 30 2020 04:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46495 * 109.46917 * 258.50777 * 3 2 1 5 5 C 1.36877 * 120.00089 * 267.13690 * 4 3 2 6 6 H 1.07993 * 120.00700 * 206.80940 * 5 4 3 7 7 C 1.39048 * 119.99354 * 26.80625 * 5 4 3 8 8 N 1.31365 * 120.00554 * 25.91218 * 7 5 4 9 9 Si 1.86808 * 119.99744 * 205.91244 * 7 5 4 10 10 H 1.48493 * 109.47107 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46949 * 120.00087 * 9 7 5 12 12 H 1.48502 * 109.46833 * 239.99833 * 9 7 5 13 13 C 1.34778 * 120.00581 * 87.14139 * 4 3 2 14 14 O 1.21595 * 119.99729 * 5.47285 * 13 4 3 15 15 C 1.47727 * 120.00160 * 185.47749 * 13 4 3 16 16 C 1.39685 * 120.13783 * 44.87002 * 15 13 4 17 17 C 1.37912 * 119.82029 * 179.97438 * 16 15 13 18 18 C 1.38390 * 120.17969 * 0.25221 * 17 16 15 19 19 C 1.38324 * 120.34960 * 359.48801 * 18 17 16 20 20 C 1.38177 * 120.05012 * 0.51413 * 19 18 17 21 21 C 1.51165 * 108.33171 * 179.74207 * 20 19 18 22 22 N 1.48068 * 105.64899 * 342.51897 * 21 20 19 23 23 C 1.48053 * 103.84659 * 27.55711 * 22 21 20 24 24 H 1.08988 * 109.47462 * 138.50283 * 3 2 1 25 25 H 1.09005 * 109.46877 * 18.49861 * 3 2 1 26 26 H 0.96995 * 120.00413 * 179.97438 * 8 7 5 27 27 H 1.07993 * 120.08829 * 0.02562 * 16 15 13 28 28 H 1.08006 * 119.91461 * 179.97438 * 17 16 15 29 29 H 1.07995 * 119.82573 * 179.74657 * 18 17 16 30 30 H 1.08997 * 110.21172 * 101.56327 * 21 20 19 31 31 H 1.09001 * 110.21202 * 223.47440 * 21 20 19 32 32 H 1.00902 * 110.99306 * 146.89812 * 22 21 20 33 33 H 1.08998 * 110.20695 * 213.37981 * 23 22 21 34 34 H 1.08998 * 110.20212 * 91.47640 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0962 0.2761 1.3535 5 6 3.3795 1.5610 1.7306 6 1 4.1099 1.7483 2.5037 7 6 2.7269 2.6251 1.1182 8 7 1.5384 2.4489 0.5870 9 14 3.5403 4.3055 1.0507 10 1 4.8661 4.2407 1.7162 11 1 3.7164 4.7136 -0.3662 12 1 2.6844 5.2980 1.7489 13 6 3.2664 -0.7357 2.2275 14 8 3.1108 -1.8856 1.8641 15 6 3.6418 -0.4477 3.6269 16 6 2.9966 0.5720 4.3305 17 6 3.3519 0.8350 5.6368 18 6 4.3484 0.0952 6.2492 19 6 4.9884 -0.9197 5.5610 20 6 4.6420 -1.1934 4.2516 21 6 5.5025 -2.3353 3.7609 22 7 6.6394 -2.4135 4.7062 23 6 6.0873 -1.8745 5.9698 24 1 2.9710 0.7704 -0.6808 25 1 2.9718 -0.9738 -0.3261 26 1 1.0830 3.1913 0.1601 27 1 2.2210 1.1523 3.8530 28 1 2.8542 1.6233 6.1822 29 1 4.6249 0.3087 7.2711 30 1 4.9362 -3.2665 3.7750 31 1 5.8638 -2.1286 2.7535 32 1 6.9469 -3.3674 4.8237 33 1 6.8618 -1.3427 6.5225 34 1 5.6779 -2.6822 6.5765 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692826684.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:08 Heat of formation + Delta-G solvation = 25.379664 kcal Electronic energy + Delta-G solvation = -20477.739261 eV Core-core repulsion = 17375.448651 eV Total energy + Delta-G solvation = -3102.290610 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.53141 -40.09687 -37.44362 -37.14563 -36.23175 -33.61050 -32.59044 -30.95643 -29.58416 -28.19739 -26.84849 -24.77208 -23.04277 -22.08270 -20.99329 -19.72491 -18.26769 -17.94126 -17.48671 -16.52338 -16.48294 -16.41987 -16.22578 -15.58699 -15.05279 -14.78791 -14.50160 -14.33507 -14.03057 -13.92630 -13.45978 -13.37512 -13.16822 -13.08659 -12.96541 -12.87179 -12.52025 -12.25733 -12.19514 -12.09438 -11.94032 -11.18257 -10.54651 -10.13559 -9.92526 -9.65202 -9.14301 -8.41322 -6.00983 0.15772 0.44198 1.41192 1.52465 1.63958 1.82394 2.03572 2.26085 2.36981 2.79912 2.95814 3.14511 3.31390 3.53479 3.61620 3.65174 4.11461 4.25735 4.42141 4.47161 4.53759 4.55510 4.65918 4.67181 4.73890 4.90587 5.06142 5.13238 5.37973 5.44211 5.53793 5.58529 5.66091 5.73319 6.05893 6.31723 6.39629 7.02992 7.04451 7.36831 7.79290 8.61351 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.007176 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.615392 B = 3901.140499 C = 4635.894495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.259 3.741 3 C 0.226 3.774 4 N -0.437 5.437 5 C -0.348 4.348 6 H 0.103 0.897 7 C 0.014 3.986 8 N -0.879 5.879 9 Si 0.979 3.021 10 H -0.259 1.259 11 H -0.275 1.275 12 H -0.287 1.287 13 C 0.497 3.503 14 O -0.618 6.618 15 C -0.101 4.101 16 C -0.077 4.077 17 C -0.129 4.129 18 C -0.081 4.081 19 C -0.126 4.126 20 C -0.089 4.089 21 C 0.091 3.909 22 N -0.661 5.661 23 C 0.088 3.912 24 H 0.122 0.878 25 H 0.115 0.885 26 H 0.273 0.727 27 H 0.115 0.885 28 H 0.153 0.847 29 H 0.161 0.839 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.359 0.641 33 H 0.109 0.891 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.315 -2.355 9.656 14.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.059 4.059 3 C 0.099 3.901 4 N -0.155 5.155 5 C -0.475 4.475 6 H 0.121 0.879 7 C -0.191 4.191 8 N -0.515 5.515 9 Si 0.803 3.197 10 H -0.183 1.183 11 H -0.201 1.201 12 H -0.213 1.213 13 C 0.289 3.711 14 O -0.506 6.506 15 C -0.104 4.104 16 C -0.096 4.096 17 C -0.147 4.147 18 C -0.099 4.099 19 C -0.127 4.127 20 C -0.090 4.090 21 C -0.038 4.038 22 N -0.292 5.292 23 C -0.041 4.041 24 H 0.139 0.861 25 H 0.133 0.867 26 H 0.083 0.917 27 H 0.133 0.867 28 H 0.171 0.829 29 H 0.179 0.821 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.176 0.824 33 H 0.127 0.873 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.826 -2.204 9.102 12.869 hybrid contribution -0.594 0.364 -0.339 0.775 sum 8.233 -1.839 8.763 12.163 Atomic orbital electron populations 1.80799 1.14660 1.14123 1.09100 1.29496 0.95718 0.88747 0.91893 1.18664 0.80585 1.03847 0.86992 1.43616 1.55977 1.07130 1.08789 1.19709 1.22546 0.80214 1.25010 0.87919 1.26001 0.93824 1.02811 0.96436 1.69957 1.10871 1.34476 1.36180 0.85088 0.78898 0.77447 0.78269 1.18252 1.20067 1.21291 1.18793 0.81584 0.84638 0.86124 1.90603 1.58662 1.21741 1.79582 1.19294 0.99061 0.98370 0.93665 1.21352 0.98771 0.94442 0.94987 1.21312 0.98503 1.00989 0.93867 1.20913 0.94724 0.93322 1.00949 1.20886 0.99275 0.98599 0.93899 1.20647 0.95538 0.96882 0.95959 1.21175 0.90094 0.95054 0.97506 1.63507 1.30987 1.27268 1.07397 1.21469 0.94267 0.96075 0.92254 0.86070 0.86693 0.91668 0.86651 0.82947 0.82107 0.92310 0.91063 0.82357 0.87263 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -26.43 18.54 20.01 0.37 -26.06 16 2 C 0.26 12.65 12.96 89.44 1.16 13.81 16 3 C 0.23 9.78 5.20 84.57 0.44 10.22 16 4 N -0.44 -20.51 2.56 -648.85 -1.66 -22.17 16 5 C -0.35 -16.11 7.12 84.10 0.60 -15.51 16 6 H 0.10 4.74 6.56 -2.91 -0.02 4.73 16 7 C 0.01 0.65 4.72 84.96 0.40 1.05 16 8 N -0.88 -43.62 9.99 21.68 0.22 -43.40 16 9 Si 0.98 36.98 29.63 68.60 2.03 39.02 16 10 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 11 H -0.28 -10.27 7.11 99.48 0.71 -9.56 16 12 H -0.29 -11.04 7.11 99.48 0.71 -10.33 16 13 C 0.50 23.65 7.08 86.75 0.61 24.27 16 14 O -0.62 -31.47 16.18 -4.01 -0.06 -31.54 16 15 C -0.10 -4.23 4.97 -20.11 -0.10 -4.33 16 16 C -0.08 -2.97 7.91 22.54 0.18 -2.79 16 17 C -0.13 -3.80 10.03 22.23 0.22 -3.58 16 18 C -0.08 -2.05 10.04 22.33 0.22 -1.83 16 19 C -0.13 -3.61 6.26 -19.70 -0.12 -3.74 16 20 C -0.09 -3.21 6.07 -19.42 -0.12 -3.33 16 21 C 0.09 2.91 6.85 85.48 0.59 3.50 16 22 N -0.66 -16.13 7.72 -514.64 -3.97 -20.10 16 23 C 0.09 1.88 7.46 85.50 0.64 2.51 16 24 H 0.12 4.90 7.39 -2.39 -0.02 4.88 16 25 H 0.12 4.51 7.44 -2.38 -0.02 4.50 16 26 H 0.27 13.22 8.31 -92.71 -0.77 12.45 16 27 H 0.12 5.04 7.01 -2.91 -0.02 5.02 16 28 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 29 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.36 6.51 8.92 -89.69 -0.80 5.71 16 33 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -63.61 296.89 1.99 -61.62 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.35 Total: 22.37 kcal Atomic # 6 Polarization: 15.54 SS G_CDS: 4.72 Total: 20.26 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -5.05 Total: -111.73 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.06 Total: -31.54 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.02 kcal Total: -63.61 1.99 -61.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692826684.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.000 kcal (2) G-P(sol) polarization free energy of solvation -63.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds