Wall clock time and date at job start Mon Mar 30 2020 04:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99835 * 2 1 4 4 H 1.48491 * 109.47115 * 269.99586 * 3 2 1 5 5 H 1.48509 * 109.46780 * 29.99770 * 3 2 1 6 6 H 1.48497 * 109.46888 * 149.99527 * 3 2 1 7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21493 * 120.00328 * 359.72056 * 12 11 10 14 14 C 1.48358 * 119.99626 * 179.72345 * 12 11 10 15 15 C 1.40169 * 119.19795 * 179.97438 * 14 12 11 16 16 C 1.36624 * 119.70212 * 179.97438 * 15 14 12 17 17 C 1.40604 * 118.20796 * 0.02562 * 16 15 14 18 18 C 1.40734 * 121.37097 * 180.02562 * 17 16 15 19 19 C 1.36578 * 118.13131 * 179.97438 * 18 17 16 20 20 C 1.39428 * 119.84866 * 0.02562 * 19 18 17 21 21 N 1.31015 * 121.83853 * 359.97438 * 20 19 18 22 22 C 1.33860 * 121.42682 * 359.97438 * 21 20 19 23 23 N 1.31886 * 119.20438 * 359.73122 * 14 12 11 24 24 H 0.96999 * 120.00239 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 26 26 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 27 27 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 28 28 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 29 29 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 30 30 H 1.07992 * 120.15083 * 359.97438 * 15 14 12 31 31 H 1.07995 * 120.89744 * 179.97438 * 16 15 14 32 32 H 1.08006 * 120.93568 * 359.95749 * 18 17 16 33 33 H 1.08000 * 120.07830 * 179.97438 * 19 18 17 34 34 H 1.08001 * 119.08336 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0055 13 8 3.4020 -6.0979 0.0059 14 6 1.4453 -7.3827 0.0111 15 6 2.1631 -8.5867 0.0163 16 6 1.4904 -9.7758 0.0220 17 6 0.0847 -9.7443 0.0218 18 6 -0.6747 -10.9291 0.0280 19 6 -2.0362 -10.8213 0.0280 20 6 -2.6326 -9.5610 0.0214 21 7 -1.9221 -8.4603 0.0157 22 6 -0.5839 -8.4933 0.0163 23 7 0.1265 -7.3644 0.0159 24 1 -0.4850 0.8400 -0.0004 25 1 0.6249 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8904 27 1 2.8722 -3.6042 0.8906 28 1 2.8722 -3.6042 -0.8894 29 1 0.5430 -4.9308 0.0000 30 1 3.2429 -8.5744 0.0158 31 1 2.0240 -10.7148 0.0256 32 1 -0.1944 -11.8965 0.0324 33 1 -2.6496 -11.7103 0.0323 34 1 -3.7103 -9.4902 0.0219 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699203410.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:32 Heat of formation + Delta-G solvation = 27.946820 kcal Electronic energy + Delta-G solvation = -18947.463409 eV Core-core repulsion = 15845.284119 eV Total energy + Delta-G solvation = -3102.179290 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.47786 -39.44698 -37.61049 -34.98160 -34.36507 -32.82839 -31.47619 -31.18064 -29.51873 -26.13603 -24.79721 -24.12626 -22.87941 -21.31123 -20.59896 -19.01125 -18.10408 -17.44535 -16.42254 -16.15703 -15.52617 -15.44570 -14.78193 -14.69652 -14.52258 -14.43572 -14.07745 -13.44597 -13.20251 -13.15935 -12.27008 -12.26514 -12.17419 -11.39962 -11.18521 -11.00665 -10.89214 -10.61952 -10.30480 -10.06190 -9.57547 -9.29905 -9.24163 -9.18883 -9.15083 -8.53618 -8.32969 -6.04107 -4.07454 -0.19340 0.23052 1.58681 2.21513 3.20892 3.23472 3.32868 3.38770 3.42711 3.60897 3.94571 4.07835 4.29335 4.35154 4.43811 4.46221 4.67096 4.82384 5.00364 5.05986 5.32502 5.34789 5.53824 5.55675 5.80953 5.88401 6.25790 6.35083 6.35256 6.73733 6.85432 7.06099 7.56838 7.67245 7.79975 7.93543 8.01553 8.30092 8.52152 8.98409 9.56990 11.07413 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.031457 B = 0.003388 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.894167 B = 8261.943282 C = 9131.378177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.118 3.882 11 N -0.693 5.693 12 C 0.556 3.444 13 O -0.538 6.538 14 C 0.154 3.846 15 C -0.129 4.129 16 C -0.050 4.050 17 C -0.146 4.146 18 C -0.046 4.046 19 C -0.176 4.176 20 C 0.157 3.843 21 N -0.456 5.456 22 C 0.302 3.698 23 N -0.434 5.434 24 H 0.262 0.738 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.411 0.589 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.137 -25.647 0.063 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.003 4.003 11 N -0.342 5.342 12 C 0.338 3.662 13 O -0.416 6.416 14 C -0.004 4.004 15 C -0.149 4.149 16 C -0.077 4.077 17 C -0.151 4.151 18 C -0.073 4.073 19 C -0.196 4.196 20 C -0.020 4.020 21 N -0.164 5.164 22 C 0.064 3.936 23 N -0.146 5.146 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.247 0.753 30 H 0.175 0.825 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.252 -23.774 0.064 23.995 hybrid contribution 0.641 -0.727 -0.004 0.969 sum -2.611 -24.501 0.060 24.640 Atomic orbital electron populations 1.69965 1.06077 1.26852 1.50211 1.25003 0.94883 0.99388 0.95032 0.86511 0.79812 0.83053 0.78158 1.20584 1.21188 1.19741 1.21035 0.93210 0.90327 1.51494 0.92204 1.19344 0.94196 0.90901 0.98185 1.21874 0.96212 0.81145 1.01112 1.46301 1.11742 1.05907 1.70205 1.17880 0.86735 0.83114 0.78450 1.90765 1.12585 1.86971 1.51231 1.21733 0.88810 0.95202 0.94620 1.21889 1.02972 0.91375 0.98683 1.21449 0.92091 0.99166 0.94969 1.19738 0.95677 0.95728 1.03962 1.21481 0.94097 0.97499 0.94248 1.22051 0.95677 0.99752 1.02108 1.23166 1.00723 0.86939 0.91218 1.67667 1.05071 1.31773 1.11924 1.19246 0.90338 0.87140 0.96906 1.67447 1.06817 1.29788 1.10589 0.92833 0.95729 0.95714 0.92072 0.92072 0.75287 0.82502 0.83328 0.83883 0.83839 0.81428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 11 N -0.69 -13.53 5.54 -61.08 -0.34 -13.86 16 12 C 0.56 10.25 7.81 -12.09 -0.09 10.16 16 13 O -0.54 -10.95 16.28 5.37 0.09 -10.86 16 14 C 0.15 2.40 6.75 -82.95 -0.56 1.84 16 15 C -0.13 -1.54 9.54 -39.44 -0.38 -1.92 16 16 C -0.05 -0.46 9.89 -39.27 -0.39 -0.85 16 17 C -0.15 -1.56 5.75 -106.68 -0.61 -2.17 16 18 C -0.05 -0.33 9.90 -39.24 -0.39 -0.72 16 19 C -0.18 -1.10 10.04 -39.74 -0.40 -1.50 16 20 C 0.16 1.37 11.14 -17.46 -0.19 1.17 16 21 N -0.46 -6.22 10.43 -12.60 -0.13 -6.36 16 22 C 0.30 4.35 7.62 -157.91 -1.20 3.15 16 23 N -0.43 -7.11 9.56 -9.19 -0.09 -7.20 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 25 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 1.36 8.14 -51.92 -0.42 0.94 16 28 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.41 7.80 7.78 -40.82 -0.32 7.49 16 30 H 0.16 1.69 7.60 -52.49 -0.40 1.29 16 31 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16 33 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 34 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 305.88 15.07 4.61 4.61 Total: -1.00 -34.48 305.88 -8.58 -43.06 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -3.64 Total: 1.49 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -4.79 Total: -1.59 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.18 Total: -53.39 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.48 -8.58 -43.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699203410.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.008 kcal (2) G-P(sol) polarization free energy of solvation -34.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds