Wall clock time and date at job start Mon Mar 30 2020 04:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20766 * 119.99622 * 2 1 4 4 C 1.50693 * 120.00300 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.47487 * 184.27688 * 4 2 1 6 6 H 1.08997 * 109.99659 * 52.89736 * 5 4 2 7 7 C 1.54339 * 109.98969 * 291.86350 * 5 4 2 8 8 C 1.55157 * 103.01636 * 218.66606 * 7 5 4 9 9 C 1.54906 * 101.58518 * 35.30763 * 8 7 5 10 10 N 1.47025 * 109.88207 * 173.99762 * 5 4 2 11 11 C 1.34776 * 125.64738 * 298.39246 * 10 5 4 12 12 O 1.21279 * 120.00003 * 354.60070 * 11 10 5 13 13 C 1.50700 * 119.99930 * 174.59864 * 11 10 5 14 14 S 1.81002 * 109.47070 * 180.02562 * 13 11 10 15 15 C 1.76198 * 100.00089 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99766 * 0.02562 * 15 14 13 17 17 C 1.38792 * 120.00321 * 179.97438 * 15 14 13 18 18 N 1.31628 * 120.00436 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 119.99881 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47112 * 89.99481 * 19 17 15 21 21 H 1.48498 * 109.47112 * 209.99965 * 19 17 15 22 22 H 1.48499 * 109.47074 * 329.99772 * 19 17 15 23 23 H 1.08994 * 109.47272 * 270.00199 * 1 2 3 24 24 H 1.09001 * 109.46618 * 30.00315 * 1 2 3 25 25 H 1.09000 * 109.47026 * 150.00096 * 1 2 3 26 26 H 1.09005 * 109.47184 * 64.27689 * 4 2 1 27 27 H 1.09000 * 109.47186 * 304.28175 * 4 2 1 28 28 H 1.08995 * 110.85011 * 100.19595 * 7 5 4 29 29 H 1.09000 * 110.51440 * 336.97200 * 7 5 4 30 30 H 1.09002 * 111.00299 * 277.22764 * 8 7 5 31 31 H 1.09003 * 111.00603 * 153.38648 * 8 7 5 32 32 H 1.08998 * 110.36500 * 204.15054 * 9 8 7 33 33 H 1.08997 * 110.45761 * 81.87826 * 9 8 7 34 34 H 1.08999 * 109.46653 * 60.00224 * 13 11 10 35 35 H 1.08992 * 109.47277 * 300.00059 * 13 11 10 36 36 H 0.97001 * 120.00338 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3050 0.0006 5 6 3.7613 -1.0274 0.1080 6 1 3.9608 -0.3827 0.9639 7 6 4.2667 -0.3513 -1.1841 8 6 5.6561 -1.0068 -1.4011 9 6 5.4013 -2.4497 -0.8983 10 7 4.4948 -2.2933 0.2537 11 6 4.3570 -3.1685 1.2694 12 8 3.6475 -2.8944 2.2140 13 6 5.0845 -4.4877 1.2311 14 16 4.6981 -5.4333 2.7253 15 6 5.6529 -6.8834 2.4252 16 1 6.2380 -6.9672 1.5212 17 6 5.6540 -7.9176 3.3509 18 7 6.3668 -9.0011 3.1264 19 14 4.6426 -7.7723 4.9147 20 1 3.2824 -8.3186 4.6770 21 1 5.3008 -8.5391 6.0029 22 1 4.5407 -6.3438 5.3074 23 1 -0.3633 0.0000 1.0276 24 1 -0.3632 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 2.0560 -1.8431 -0.9250 27 1 1.9410 -1.9087 0.8500 28 1 4.3655 0.7253 -1.0455 29 1 3.6006 -0.5744 -2.0176 30 1 6.4194 -0.5126 -0.8001 31 1 5.9292 -1.0034 -2.4564 32 1 6.3368 -2.9129 -0.5847 33 1 4.9258 -3.0461 -1.6769 34 1 6.1586 -4.3088 1.1815 35 1 4.7690 -5.0513 0.3532 36 1 6.3673 -9.7240 3.7732 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701238802.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:39 Heat of formation + Delta-G solvation = -79.115599 kcal Electronic energy + Delta-G solvation = -18568.967280 eV Core-core repulsion = 15565.296616 eV Total energy + Delta-G solvation = -3003.670665 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.45923 -39.14807 -37.17972 -32.49233 -32.44691 -31.72468 -30.25875 -28.83307 -26.26996 -25.63095 -23.03114 -21.40552 -19.85018 -19.03908 -17.69292 -17.06335 -16.47885 -15.60545 -15.47550 -15.16501 -14.92306 -14.75838 -14.32982 -13.94105 -13.59581 -13.23932 -12.94891 -12.83276 -12.69345 -12.56423 -12.28211 -12.16905 -11.77036 -11.37224 -11.25770 -11.02469 -10.98099 -10.92338 -10.61789 -9.93392 -9.85003 -9.48015 -9.01708 -8.59582 -8.51439 -6.93645 -6.30184 -4.02170 1.78210 2.65762 2.90266 3.16152 3.31778 3.49430 3.57043 3.98384 4.30591 4.34229 4.38061 4.65312 4.72741 4.83400 4.91855 5.05574 5.08964 5.16530 5.19660 5.22327 5.28444 5.44146 5.53473 5.61757 5.68871 5.73649 5.77505 5.80707 5.89967 6.00526 6.08411 6.40730 7.31148 7.57924 7.92844 8.40195 8.41233 9.16004 10.79071 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.027996 B = 0.004419 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.902267 B = 6334.361077 C = 7098.145783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.362 3.638 3 O -0.461 6.461 4 C -0.187 4.187 5 C 0.149 3.851 6 H 0.080 0.920 7 C -0.122 4.122 8 C -0.134 4.134 9 C 0.099 3.901 10 N -0.622 5.622 11 C 0.547 3.453 12 O -0.518 6.518 13 C -0.118 4.118 14 S -0.142 6.142 15 C -0.521 4.521 16 H 0.088 0.912 17 C 0.096 3.904 18 N -0.880 5.880 19 Si 0.856 3.144 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 H 0.097 0.903 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.947 16.508 -11.394 21.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.238 3.762 3 O -0.335 6.335 4 C -0.226 4.226 5 C 0.045 3.955 6 H 0.098 0.902 7 C -0.160 4.160 8 C -0.172 4.172 9 C -0.025 4.025 10 N -0.359 5.359 11 C 0.336 3.664 12 O -0.393 6.393 13 C -0.269 4.269 14 S 0.084 5.916 15 C -0.669 4.669 16 H 0.106 0.894 17 C -0.112 4.112 18 N -0.517 5.517 19 Si 0.681 3.319 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.159 1.159 23 H 0.115 0.885 24 H 0.102 0.898 25 H 0.104 0.896 26 H 0.119 0.881 27 H 0.131 0.869 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.612 17.211 -9.853 21.243 hybrid contribution 0.448 -0.804 -0.472 1.034 sum -7.164 16.407 -10.325 20.667 Atomic orbital electron populations 1.22286 0.94387 1.04602 1.04877 1.24505 0.91978 0.89952 0.69774 1.90393 1.71952 1.35119 1.36029 1.22577 0.96217 0.98126 1.05648 1.21275 0.89751 0.85357 0.99105 0.90181 1.22693 0.96343 1.00873 0.96068 1.22802 0.97538 0.94950 1.01898 1.22335 0.94190 0.97559 0.88373 1.48597 1.42518 1.21291 1.23477 1.20003 0.81455 0.84448 0.80500 1.90686 1.39384 1.76840 1.32353 1.23271 1.03158 0.95303 1.05131 1.84770 1.64979 1.18214 1.23628 1.22307 1.32638 1.01076 1.10865 0.89399 1.24701 0.94577 0.93978 0.97965 1.69935 1.39230 1.06199 1.36333 0.86741 0.80826 0.81265 0.83065 1.19202 1.19917 1.15922 0.88504 0.89796 0.89648 0.88136 0.86936 0.89418 0.90998 0.90461 0.89796 0.90150 0.91243 0.88590 0.88542 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.45 10.25 36.01 0.37 -1.08 16 2 C 0.36 3.71 7.08 -29.04 -0.21 3.50 16 3 O -0.46 -5.97 15.52 5.99 0.09 -5.87 16 4 C -0.19 -2.05 5.11 -27.89 -0.14 -2.19 16 5 C 0.15 1.84 2.49 -66.94 -0.17 1.67 16 6 H 0.08 1.16 7.97 -51.93 -0.41 0.75 16 7 C -0.12 -1.15 5.46 -24.89 -0.14 -1.28 16 8 C -0.13 -1.12 7.09 -24.58 -0.17 -1.30 16 9 C 0.10 1.02 6.65 -2.53 -0.02 1.01 16 10 N -0.62 -8.63 3.06 -163.02 -0.50 -9.13 16 11 C 0.55 9.93 7.58 -10.99 -0.08 9.85 16 12 O -0.52 -11.09 15.05 5.56 0.08 -11.01 16 13 C -0.12 -2.31 5.25 36.01 0.19 -2.12 16 14 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 15 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 16 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 17 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 18 N -0.88 -26.46 13.97 55.49 0.78 -25.69 16 19 Si 0.86 21.68 27.74 -169.99 -4.72 16.97 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 23 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.47 8.12 -51.93 -0.42 0.04 16 26 H 0.10 0.90 8.00 -51.93 -0.42 0.49 16 27 H 0.11 1.47 6.87 -51.93 -0.36 1.11 16 28 H 0.09 0.86 7.69 -51.93 -0.40 0.46 16 29 H 0.07 0.59 7.74 -51.93 -0.40 0.19 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.83 7.51 -51.93 -0.39 0.44 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 1.77 7.77 -51.92 -0.40 1.37 16 35 H 0.10 1.76 8.14 -51.92 -0.42 1.33 16 36 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 314.20 15.07 4.73 4.73 Total: -1.00 -34.07 314.20 -6.99 -41.06 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -5.32 Total: -1.60 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -0.15 Total: -3.88 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.28 Total: -34.81 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: 0.18 Total: -16.88 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.72 Total: 16.97 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.07 -6.99 -41.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701238802.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.058 kcal (2) G-P(sol) polarization free energy of solvation -34.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds