Wall clock time and date at job start Mon Mar 30 2020 04:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20766 * 119.99622 * 2 1 4 4 C 1.50693 * 120.00300 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.47487 * 184.27688 * 4 2 1 6 6 H 1.08997 * 109.99659 * 52.89736 * 5 4 2 7 7 C 1.54339 * 109.98969 * 291.86350 * 5 4 2 8 8 C 1.55157 * 103.01636 * 218.66606 * 7 5 4 9 9 C 1.54906 * 101.58518 * 35.30763 * 8 7 5 10 10 N 1.47025 * 109.88207 * 173.99762 * 5 4 2 11 11 C 1.34776 * 125.64738 * 298.39246 * 10 5 4 12 12 O 1.21279 * 120.00003 * 354.60070 * 11 10 5 13 13 C 1.50700 * 119.99930 * 174.59864 * 11 10 5 14 14 S 1.81002 * 109.47070 * 180.02562 * 13 11 10 15 15 C 1.76198 * 100.00089 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99766 * 0.02562 * 15 14 13 17 17 C 1.38792 * 120.00321 * 179.97438 * 15 14 13 18 18 N 1.31628 * 120.00436 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 119.99881 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47112 * 89.99481 * 19 17 15 21 21 H 1.48498 * 109.47112 * 209.99965 * 19 17 15 22 22 H 1.48499 * 109.47074 * 329.99772 * 19 17 15 23 23 H 1.08994 * 109.47272 * 270.00199 * 1 2 3 24 24 H 1.09001 * 109.46618 * 30.00315 * 1 2 3 25 25 H 1.09000 * 109.47026 * 150.00096 * 1 2 3 26 26 H 1.09005 * 109.47184 * 64.27689 * 4 2 1 27 27 H 1.09000 * 109.47186 * 304.28175 * 4 2 1 28 28 H 1.08995 * 110.85011 * 100.19595 * 7 5 4 29 29 H 1.09000 * 110.51440 * 336.97200 * 7 5 4 30 30 H 1.09002 * 111.00299 * 277.22764 * 8 7 5 31 31 H 1.09003 * 111.00603 * 153.38648 * 8 7 5 32 32 H 1.08998 * 110.36500 * 204.15054 * 9 8 7 33 33 H 1.08997 * 110.45761 * 81.87826 * 9 8 7 34 34 H 1.08999 * 109.46653 * 60.00224 * 13 11 10 35 35 H 1.08992 * 109.47277 * 300.00059 * 13 11 10 36 36 H 0.97001 * 120.00338 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3050 0.0006 5 6 3.7613 -1.0274 0.1080 6 1 3.9608 -0.3827 0.9639 7 6 4.2667 -0.3513 -1.1841 8 6 5.6561 -1.0068 -1.4011 9 6 5.4013 -2.4497 -0.8983 10 7 4.4948 -2.2933 0.2537 11 6 4.3570 -3.1685 1.2694 12 8 3.6475 -2.8944 2.2140 13 6 5.0845 -4.4877 1.2311 14 16 4.6981 -5.4333 2.7253 15 6 5.6529 -6.8834 2.4252 16 1 6.2380 -6.9672 1.5212 17 6 5.6540 -7.9176 3.3509 18 7 6.3668 -9.0011 3.1264 19 14 4.6426 -7.7723 4.9147 20 1 3.2824 -8.3186 4.6770 21 1 5.3008 -8.5391 6.0029 22 1 4.5407 -6.3438 5.3074 23 1 -0.3633 0.0000 1.0276 24 1 -0.3632 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 2.0560 -1.8431 -0.9250 27 1 1.9410 -1.9087 0.8500 28 1 4.3655 0.7253 -1.0455 29 1 3.6006 -0.5744 -2.0176 30 1 6.4194 -0.5126 -0.8001 31 1 5.9292 -1.0034 -2.4564 32 1 6.3368 -2.9129 -0.5847 33 1 4.9258 -3.0461 -1.6769 34 1 6.1586 -4.3088 1.1815 35 1 4.7690 -5.0513 0.3532 36 1 6.3673 -9.7240 3.7732 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701238802.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:39 Heat of formation + Delta-G solvation = -101.430280 kcal Electronic energy + Delta-G solvation = -18569.934917 eV Core-core repulsion = 15565.296616 eV Total energy + Delta-G solvation = -3004.638302 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.51650 -40.19697 -38.36090 -34.68105 -33.53263 -32.70754 -31.03861 -30.19502 -27.86111 -27.08727 -24.11331 -22.24885 -20.78270 -20.32519 -19.51775 -18.29328 -17.61159 -17.13300 -16.57199 -16.45598 -16.28001 -15.88614 -15.70481 -15.25719 -14.89987 -14.58926 -14.12028 -14.02339 -13.74451 -13.51610 -13.33970 -13.09936 -13.02996 -12.96106 -12.79522 -12.65370 -12.11575 -11.88757 -11.82689 -11.67571 -11.17541 -11.04629 -10.66947 -10.54841 -9.73983 -9.01401 -8.52118 -6.23454 0.95162 0.97546 1.30849 1.44596 1.48100 1.52630 2.00980 2.24534 2.66807 2.86267 3.16902 3.43217 3.56794 3.81439 3.85351 4.08021 4.17348 4.22132 4.29059 4.37190 4.40995 4.57840 4.66863 4.68567 4.73804 4.86507 4.94918 5.00405 5.11034 5.16921 5.30541 5.38379 5.70173 6.10695 6.35349 6.51742 6.93042 7.03574 8.60348 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.027996 B = 0.004419 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.902267 B = 6334.361077 C = 7098.145783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.366 3.634 3 O -0.492 6.492 4 C -0.185 4.185 5 C 0.141 3.859 6 H 0.050 0.950 7 C -0.113 4.113 8 C -0.123 4.123 9 C 0.087 3.913 10 N -0.613 5.613 11 C 0.548 3.452 12 O -0.560 6.560 13 C -0.103 4.103 14 S -0.173 6.173 15 C -0.529 4.529 16 H 0.062 0.938 17 C 0.048 3.952 18 N -0.917 5.917 19 Si 0.913 3.087 20 H -0.260 1.260 21 H -0.259 1.259 22 H -0.238 1.238 23 H 0.102 0.898 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.125 0.875 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.800 17.506 -12.859 23.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.244 3.756 3 O -0.368 6.368 4 C -0.223 4.223 5 C 0.038 3.962 6 H 0.069 0.931 7 C -0.150 4.150 8 C -0.161 4.161 9 C -0.035 4.035 10 N -0.347 5.347 11 C 0.336 3.664 12 O -0.438 6.438 13 C -0.253 4.253 14 S 0.054 5.946 15 C -0.677 4.677 16 H 0.080 0.920 17 C -0.158 4.158 18 N -0.554 5.554 19 Si 0.735 3.265 20 H -0.185 1.185 21 H -0.183 1.183 22 H -0.162 1.162 23 H 0.120 0.880 24 H 0.111 0.889 25 H 0.125 0.875 26 H 0.143 0.857 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.133 0.867 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.451 18.221 -11.366 23.078 hybrid contribution 0.763 -1.031 -0.157 1.292 sum -7.688 17.190 -11.522 22.077 Atomic orbital electron populations 1.22291 0.91611 1.06135 1.05594 1.24818 0.93400 0.88962 0.68418 1.90390 1.72847 1.35900 1.37703 1.22563 0.95219 0.98663 1.05895 1.21447 0.90862 0.84199 0.99719 0.93130 1.22656 0.97260 1.00328 0.94801 1.22810 0.96693 0.92978 1.03643 1.22704 0.93739 0.99508 0.87508 1.48562 1.42436 1.20665 1.23030 1.19670 0.81101 0.84518 0.81114 1.90669 1.41289 1.77629 1.34240 1.23218 1.04163 0.95583 1.02370 1.84690 1.64551 1.17571 1.27822 1.22445 1.32585 1.02692 1.09974 0.91957 1.25532 0.95588 0.93701 1.00933 1.70011 1.40604 1.07070 1.37764 0.85884 0.79665 0.81163 0.79774 1.18489 1.18327 1.16225 0.88014 0.88873 0.87547 0.85662 0.89159 0.89764 0.89041 0.90848 0.86659 0.90015 0.89061 0.87427 0.86934 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.40 10.25 71.24 0.73 -1.67 16 2 C 0.37 7.02 7.08 29.10 0.21 7.22 16 3 O -0.49 -12.37 15.52 -1.47 -0.02 -12.40 16 4 C -0.19 -3.81 5.11 29.85 0.15 -3.66 16 5 C 0.14 3.34 2.49 45.35 0.11 3.45 16 6 H 0.05 1.50 7.97 -2.39 -0.02 1.48 16 7 C -0.11 -1.84 5.46 31.79 0.17 -1.67 16 8 C -0.12 -1.68 7.09 31.98 0.23 -1.45 16 9 C 0.09 1.57 6.65 86.85 0.58 2.15 16 10 N -0.61 -16.16 3.06 -788.05 -2.41 -18.57 16 11 C 0.55 19.61 7.58 87.66 0.66 20.27 16 12 O -0.56 -24.24 15.05 -3.03 -0.05 -24.29 16 13 C -0.10 -3.94 5.25 71.24 0.37 -3.56 16 14 S -0.17 -8.75 18.55 -56.49 -1.05 -9.80 16 15 C -0.53 -30.74 10.04 67.95 0.68 -30.06 16 16 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 17 C 0.05 2.80 5.50 84.86 0.47 3.27 16 18 N -0.92 -55.57 13.97 21.65 0.30 -55.27 16 19 Si 0.91 44.79 27.74 68.60 1.90 46.70 16 20 H -0.26 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.24 -11.73 6.74 99.48 0.67 -11.06 16 23 H 0.10 1.18 8.14 -2.39 -0.02 1.17 16 24 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.11 0.84 8.12 -2.39 -0.02 0.82 16 26 H 0.13 1.91 8.00 -2.38 -0.02 1.89 16 27 H 0.09 2.34 6.87 -2.39 -0.02 2.32 16 28 H 0.08 1.50 7.69 -2.39 -0.02 1.48 16 29 H 0.09 1.17 7.74 -2.39 -0.02 1.15 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 1.49 7.51 -2.39 -0.02 1.47 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.11 3.87 7.77 -2.40 -0.02 3.85 16 35 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 36 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -75.00 314.20 4.07 -70.93 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 1.03 Total: 8.41 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 4.37 Total: -5.71 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -2.11 Total: -73.84 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -0.07 Total: -36.68 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.90 Total: 46.70 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.05 Total: -9.80 kcal Total: -75.00 4.07 -70.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701238802.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.496 kcal (2) G-P(sol) polarization free energy of solvation -75.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds