Wall clock time and date at job start Mon Mar 30 2020 04:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.67357 * 2 1 4 4 C 1.53400 * 109.67229 * 120.49561 * 2 1 3 5 5 N 1.46865 * 108.89214 * 169.12082 * 4 2 1 6 6 C 1.34777 * 120.37920 * 122.45228 * 5 4 2 7 7 O 1.21287 * 119.99847 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99750 * 179.97438 * 6 5 4 9 9 S 1.81003 * 109.47045 * 179.97438 * 8 6 5 10 10 C 1.76191 * 100.00169 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00168 * 0.02562 * 10 9 8 12 12 C 1.38801 * 120.00297 * 179.97438 * 10 9 8 13 13 N 1.31631 * 120.00205 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 119.99742 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47007 * 90.00067 * 14 12 10 16 16 H 1.48498 * 109.46850 * 210.00032 * 14 12 10 17 17 H 1.48501 * 109.47198 * 329.99879 * 14 12 10 18 18 C 1.46870 * 119.22551 * 302.63548 * 5 4 2 19 19 C 1.53399 * 108.89368 * 57.36862 * 18 5 4 20 20 H 1.09001 * 109.67267 * 190.91173 * 19 18 5 21 21 C 1.53002 * 109.70456 * 70.39324 * 19 18 5 22 22 C 1.51291 * 109.70346 * 239.48022 * 2 1 3 23 23 O 1.20758 * 120.80538 * 7.26802 * 22 2 1 24 24 H 1.09005 * 109.47117 * 299.50456 * 1 2 3 25 25 H 1.08999 * 109.47246 * 59.50407 * 1 2 3 26 26 H 1.08992 * 109.47262 * 179.50670 * 1 2 3 27 27 H 1.09002 * 109.58796 * 288.98194 * 4 2 1 28 28 H 1.08996 * 109.58792 * 49.26432 * 4 2 1 29 29 H 1.08993 * 109.47636 * 299.99874 * 8 6 5 30 30 H 1.09001 * 109.46909 * 60.00832 * 8 6 5 31 31 H 0.96998 * 120.00110 * 179.97438 * 13 12 10 32 32 H 1.08991 * 109.46771 * 297.57516 * 18 5 4 33 33 H 1.09005 * 109.69924 * 177.29426 * 18 5 4 34 34 H 1.08996 * 109.46917 * 301.01644 * 21 19 18 35 35 H 1.09002 * 109.46570 * 61.02013 * 21 19 18 36 36 H 1.09001 * 109.46819 * 181.01629 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 6 2.0464 -0.7330 1.2447 5 7 3.4914 -0.9531 1.1016 6 6 4.3483 -0.4765 2.0263 7 8 3.9274 0.1377 2.9836 8 6 5.8293 -0.7079 1.8712 9 16 6.7069 0.0482 3.2620 10 6 8.3665 -0.3634 2.8368 11 1 8.5701 -0.9244 1.9367 12 6 9.4124 0.0343 3.6581 13 7 10.6523 -0.2728 3.3401 14 14 9.0604 1.0053 5.2146 15 1 8.8559 0.0673 6.3475 16 1 10.2097 1.8975 5.5119 17 1 7.8359 1.8230 5.0217 18 6 3.9919 -1.6951 -0.0629 19 6 3.5256 -0.9867 -1.3412 20 1 3.7203 -1.6225 -2.2049 21 6 4.2732 0.3389 -1.4984 22 6 2.0401 -0.7233 -1.2270 23 8 1.2800 -1.0821 -2.0940 24 1 -0.3633 0.5061 0.8944 25 1 -0.3634 0.5215 -0.8855 26 1 -0.3633 -1.0275 -0.0088 27 1 1.8549 -0.1280 2.1309 28 1 1.5384 -1.6926 1.3407 29 1 6.0299 -1.7790 1.8537 30 1 6.1715 -0.2587 0.9389 31 1 11.3832 0.0055 3.9139 32 1 3.5975 -2.7109 -0.0434 33 1 5.0813 -1.7255 -0.0387 34 1 4.0833 0.9684 -0.6290 35 1 5.3427 0.1453 -1.5803 36 1 3.9260 0.8473 -2.3979 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701246478.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:40 Heat of formation + Delta-G solvation = -80.366814 kcal Electronic energy + Delta-G solvation = -18963.706200 eV Core-core repulsion = 15959.981279 eV Total energy + Delta-G solvation = -3003.724921 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.88173 -39.12811 -36.53505 -34.18079 -32.66878 -32.47463 -29.77853 -27.17210 -26.30058 -25.63000 -24.19957 -22.40981 -20.14127 -18.53749 -17.74672 -17.00601 -16.35484 -16.05387 -15.68633 -15.21370 -15.05119 -14.92573 -14.17696 -13.95511 -13.62700 -13.28799 -12.86043 -12.77678 -12.67845 -12.49574 -12.37754 -12.14522 -11.78913 -11.73787 -11.51195 -11.30045 -11.23991 -11.04412 -10.64758 -9.90152 -9.72253 -9.49277 -9.04415 -8.81956 -8.54505 -6.97313 -6.32829 -4.05273 1.65124 2.57502 2.80839 3.07008 3.30138 3.46945 3.52271 3.68273 4.27982 4.32297 4.38410 4.46153 4.62057 4.71395 4.82316 4.96991 5.06392 5.07695 5.21541 5.28223 5.32613 5.38546 5.51078 5.59432 5.61145 5.66451 5.67398 5.73826 5.87000 5.89277 5.99611 6.35539 7.16743 7.28793 7.90013 8.28926 8.37251 9.13337 10.76333 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.036323 B = 0.004553 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.678017 B = 6147.913610 C = 6631.674103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.156 4.156 3 H 0.110 0.890 4 C 0.124 3.876 5 N -0.621 5.621 6 C 0.536 3.464 7 O -0.514 6.514 8 C -0.124 4.124 9 S -0.141 6.141 10 C -0.522 4.522 11 H 0.088 0.912 12 C 0.097 3.903 13 N -0.880 5.880 14 Si 0.856 3.144 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C 0.115 3.885 19 C -0.155 4.155 20 H 0.106 0.894 21 C -0.143 4.143 22 C 0.371 3.629 23 O -0.452 6.452 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.106 0.894 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.271 0.729 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.374 -1.349 -8.863 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.176 4.176 3 H 0.128 0.872 4 C 0.001 3.999 5 N -0.357 5.357 6 C 0.324 3.676 7 O -0.388 6.388 8 C -0.274 4.274 9 S 0.085 5.915 10 C -0.670 4.670 11 H 0.106 0.894 12 C -0.112 4.112 13 N -0.516 5.516 14 Si 0.681 3.319 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 C -0.009 4.009 19 C -0.175 4.175 20 H 0.124 0.876 21 C -0.201 4.201 22 C 0.246 3.754 23 O -0.324 6.324 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.125 0.875 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.193 -0.624 -7.840 18.907 hybrid contribution 0.789 -0.386 -0.536 1.030 sum -16.404 -1.011 -8.376 18.446 Atomic orbital electron populations 1.21602 0.92391 1.02855 1.02614 1.22287 0.98160 1.01986 0.95199 0.87235 1.21558 0.80054 1.00650 0.97654 1.48076 1.06392 1.56998 1.24206 1.20345 0.88060 0.77614 0.81543 1.90701 1.78634 1.39305 1.30120 1.23337 0.93179 1.05489 1.05431 1.84822 1.03857 1.72853 1.29968 1.22293 0.88946 1.41998 1.13719 0.89361 1.24702 0.94036 0.94764 0.97698 1.69933 0.98597 1.44769 1.38298 0.86749 0.80149 0.81446 0.83590 1.19190 1.19920 1.15931 1.21811 1.01613 0.94638 0.82801 1.22380 0.94354 1.00406 1.00351 0.87557 1.21756 1.00864 0.94908 1.02534 1.24777 0.90527 0.74532 0.85597 1.90384 1.60086 1.41750 1.40181 0.91488 0.91729 0.92053 0.87539 0.90988 0.88405 0.88318 0.91900 0.90552 0.87695 0.91549 0.90621 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.56 37.16 0.32 -0.83 16 2 C -0.16 -1.48 2.87 -91.27 -0.26 -1.74 16 3 H 0.11 1.03 7.73 -51.93 -0.40 0.63 16 4 C 0.12 1.30 5.76 -3.64 -0.02 1.28 16 5 N -0.62 -7.54 2.58 -172.61 -0.45 -7.99 16 6 C 0.54 8.87 7.71 -10.99 -0.08 8.79 16 7 O -0.51 -10.34 15.24 5.55 0.08 -10.26 16 8 C -0.12 -2.24 4.49 36.00 0.16 -2.08 16 9 S -0.14 -3.44 18.55 -107.50 -1.99 -5.43 16 10 C -0.52 -14.54 10.04 30.94 0.31 -14.23 16 11 H 0.09 2.55 8.03 -52.49 -0.42 2.13 16 12 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 13 N -0.88 -25.99 13.97 55.49 0.78 -25.21 16 14 Si 0.86 21.28 27.74 -169.99 -4.72 16.57 16 15 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 18 C 0.12 1.10 5.73 -3.63 -0.02 1.08 16 19 C -0.15 -1.40 3.20 -91.27 -0.29 -1.69 16 20 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 21 C -0.14 -1.31 9.03 37.16 0.34 -0.98 16 22 C 0.37 3.86 5.90 -28.45 -0.17 3.70 16 23 O -0.45 -5.86 16.88 6.00 0.10 -5.76 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.11 1.25 6.96 -51.93 -0.36 0.89 16 28 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 29 H 0.10 1.64 7.87 -51.92 -0.41 1.23 16 30 H 0.10 1.63 7.75 -51.91 -0.40 1.23 16 31 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.98 5.85 -51.93 -0.30 0.68 16 34 H 0.07 0.69 7.31 -51.93 -0.38 0.31 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 309.55 15.07 4.66 4.66 Total: -1.00 -32.98 309.55 -6.56 -39.54 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -5.21 Total: -2.08 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 0.18 Total: -4.03 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.33 Total: -33.20 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.19 Total: -16.02 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.72 Total: 16.57 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.99 Total: -5.43 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.98 -6.56 -39.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701246478.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.830 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds