Wall clock time and date at job start Mon Mar 30 2020 04:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.67357 * 2 1 4 4 C 1.53400 * 109.67229 * 120.49561 * 2 1 3 5 5 N 1.46865 * 108.89214 * 169.12082 * 4 2 1 6 6 C 1.34777 * 120.37920 * 122.45228 * 5 4 2 7 7 O 1.21287 * 119.99847 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99750 * 179.97438 * 6 5 4 9 9 S 1.81003 * 109.47045 * 179.97438 * 8 6 5 10 10 C 1.76191 * 100.00169 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00168 * 0.02562 * 10 9 8 12 12 C 1.38801 * 120.00297 * 179.97438 * 10 9 8 13 13 N 1.31631 * 120.00205 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 119.99742 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47007 * 90.00067 * 14 12 10 16 16 H 1.48498 * 109.46850 * 210.00032 * 14 12 10 17 17 H 1.48501 * 109.47198 * 329.99879 * 14 12 10 18 18 C 1.46870 * 119.22551 * 302.63548 * 5 4 2 19 19 C 1.53399 * 108.89368 * 57.36862 * 18 5 4 20 20 H 1.09001 * 109.67267 * 190.91173 * 19 18 5 21 21 C 1.53002 * 109.70456 * 70.39324 * 19 18 5 22 22 C 1.51291 * 109.70346 * 239.48022 * 2 1 3 23 23 O 1.20758 * 120.80538 * 7.26802 * 22 2 1 24 24 H 1.09005 * 109.47117 * 299.50456 * 1 2 3 25 25 H 1.08999 * 109.47246 * 59.50407 * 1 2 3 26 26 H 1.08992 * 109.47262 * 179.50670 * 1 2 3 27 27 H 1.09002 * 109.58796 * 288.98194 * 4 2 1 28 28 H 1.08996 * 109.58792 * 49.26432 * 4 2 1 29 29 H 1.08993 * 109.47636 * 299.99874 * 8 6 5 30 30 H 1.09001 * 109.46909 * 60.00832 * 8 6 5 31 31 H 0.96998 * 120.00110 * 179.97438 * 13 12 10 32 32 H 1.08991 * 109.46771 * 297.57516 * 18 5 4 33 33 H 1.09005 * 109.69924 * 177.29426 * 18 5 4 34 34 H 1.08996 * 109.46917 * 301.01644 * 21 19 18 35 35 H 1.09002 * 109.46570 * 61.02013 * 21 19 18 36 36 H 1.09001 * 109.46819 * 181.01629 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 6 2.0464 -0.7330 1.2447 5 7 3.4914 -0.9531 1.1016 6 6 4.3483 -0.4765 2.0263 7 8 3.9274 0.1377 2.9836 8 6 5.8293 -0.7079 1.8712 9 16 6.7069 0.0482 3.2620 10 6 8.3665 -0.3634 2.8368 11 1 8.5701 -0.9244 1.9367 12 6 9.4124 0.0343 3.6581 13 7 10.6523 -0.2728 3.3401 14 14 9.0604 1.0053 5.2146 15 1 8.8559 0.0673 6.3475 16 1 10.2097 1.8975 5.5119 17 1 7.8359 1.8230 5.0217 18 6 3.9919 -1.6951 -0.0629 19 6 3.5256 -0.9867 -1.3412 20 1 3.7203 -1.6225 -2.2049 21 6 4.2732 0.3389 -1.4984 22 6 2.0401 -0.7233 -1.2270 23 8 1.2800 -1.0821 -2.0940 24 1 -0.3633 0.5061 0.8944 25 1 -0.3634 0.5215 -0.8855 26 1 -0.3633 -1.0275 -0.0088 27 1 1.8549 -0.1280 2.1309 28 1 1.5384 -1.6926 1.3407 29 1 6.0299 -1.7790 1.8537 30 1 6.1715 -0.2587 0.9389 31 1 11.3832 0.0055 3.9139 32 1 3.5975 -2.7109 -0.0434 33 1 5.0813 -1.7255 -0.0387 34 1 4.0833 0.9684 -0.6290 35 1 5.3427 0.1453 -1.5803 36 1 3.9260 0.8473 -2.3979 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701246478.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:40 Heat of formation + Delta-G solvation = -101.254183 kcal Electronic energy + Delta-G solvation = -18964.611945 eV Core-core repulsion = 15959.981279 eV Total energy + Delta-G solvation = -3004.630666 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.83931 -40.26311 -37.60713 -34.96988 -34.64675 -33.64937 -31.08830 -28.02637 -27.83712 -27.10274 -25.13446 -23.20139 -21.28620 -19.89908 -19.16188 -18.28893 -17.41183 -17.07139 -16.99074 -16.74119 -16.14646 -15.91180 -15.64907 -15.22136 -14.95032 -14.72883 -14.18972 -13.72205 -13.57903 -13.44342 -13.30703 -13.21383 -13.07747 -13.00296 -12.76966 -12.57509 -12.43278 -12.28153 -12.02493 -11.84799 -11.14890 -10.99180 -10.52588 -10.38067 -9.85808 -8.97124 -8.49206 -6.19550 0.80562 0.98940 1.33207 1.46683 1.51682 1.54567 1.98242 2.26609 2.69328 2.89615 2.90182 3.42422 3.59053 3.66408 3.81155 3.94747 4.06185 4.22853 4.26366 4.39980 4.48289 4.51625 4.56233 4.65355 4.76399 4.85531 4.87823 4.93343 4.99335 5.18748 5.24159 5.41364 5.73249 6.12033 6.14650 6.38195 6.96556 7.03489 8.62997 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.036323 B = 0.004553 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.678017 B = 6147.913610 C = 6631.674103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.152 4.152 3 H 0.111 0.889 4 C 0.124 3.876 5 N -0.607 5.607 6 C 0.541 3.459 7 O -0.556 6.556 8 C -0.110 4.110 9 S -0.176 6.176 10 C -0.526 4.526 11 H 0.065 0.935 12 C 0.048 3.952 13 N -0.917 5.917 14 Si 0.911 3.089 15 H -0.264 1.264 16 H -0.261 1.261 17 H -0.236 1.236 18 C 0.109 3.891 19 C -0.148 4.148 20 H 0.123 0.877 21 C -0.143 4.143 22 C 0.375 3.625 23 O -0.477 6.477 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.276 0.724 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.684 -1.640 -9.377 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.172 4.172 3 H 0.128 0.872 4 C 0.001 3.999 5 N -0.341 5.341 6 C 0.329 3.671 7 O -0.433 6.433 8 C -0.260 4.260 9 S 0.050 5.950 10 C -0.673 4.673 11 H 0.083 0.917 12 C -0.158 4.158 13 N -0.555 5.555 14 Si 0.733 3.267 15 H -0.188 1.188 16 H -0.186 1.186 17 H -0.160 1.160 18 C -0.013 4.013 19 C -0.168 4.168 20 H 0.141 0.859 21 C -0.201 4.201 22 C 0.252 3.748 23 O -0.351 6.351 24 H 0.097 0.903 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.127 0.873 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.518 -0.933 -8.393 20.352 hybrid contribution 1.103 -0.373 -0.532 1.280 sum -17.415 -1.306 -8.925 19.612 Atomic orbital electron populations 1.21589 0.91434 1.03056 1.03098 1.22256 0.98934 1.01742 0.94227 0.87156 1.21691 0.78823 1.01654 0.97689 1.48013 1.06695 1.55657 1.23703 1.19989 0.87628 0.77606 0.81879 1.90692 1.79004 1.41548 1.32081 1.23324 0.93798 1.05900 1.03015 1.84755 1.02356 1.74071 1.33797 1.22450 0.91063 1.41094 1.12741 0.91698 1.25515 0.93943 0.95773 1.00559 1.70012 0.99529 1.46229 1.39765 0.85911 0.80248 0.80383 0.80117 1.18828 1.18591 1.15963 1.22085 1.02077 0.95445 0.81739 1.22360 0.93270 1.00550 1.00608 0.85928 1.21758 1.01205 0.94819 1.02282 1.24996 0.90929 0.73655 0.85267 1.90388 1.60781 1.42833 1.41059 0.90266 0.92031 0.91978 0.88690 0.89024 0.86783 0.86545 0.91445 0.88208 0.87259 0.92891 0.90178 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.56 71.98 0.62 -1.36 16 2 C -0.15 -2.55 2.87 -11.22 -0.03 -2.59 16 3 H 0.11 1.88 7.73 -2.38 -0.02 1.87 16 4 C 0.12 2.33 5.76 86.44 0.50 2.83 16 5 N -0.61 -13.34 2.58 -818.41 -2.12 -15.45 16 6 C 0.54 17.07 7.71 87.66 0.68 17.74 16 7 O -0.56 -21.96 15.24 -3.05 -0.05 -22.01 16 8 C -0.11 -3.80 4.49 71.23 0.32 -3.48 16 9 S -0.18 -8.50 18.55 -56.49 -1.05 -9.55 16 10 C -0.53 -29.44 10.04 67.95 0.68 -28.76 16 11 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 12 C 0.05 2.71 5.50 84.86 0.47 3.18 16 13 N -0.92 -54.65 13.97 21.65 0.30 -54.34 16 14 Si 0.91 43.88 27.74 68.60 1.90 45.78 16 15 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.24 -11.29 6.74 99.48 0.67 -10.62 16 18 C 0.11 1.74 5.73 86.44 0.49 2.24 16 19 C -0.15 -2.26 3.20 -11.22 -0.04 -2.30 16 20 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 21 C -0.14 -2.32 9.03 71.98 0.65 -1.67 16 22 C 0.38 6.93 5.90 29.48 0.17 7.10 16 23 O -0.48 -11.38 16.88 -1.44 -0.02 -11.40 16 24 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.06 0.96 8.08 -2.39 -0.02 0.94 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.09 2.09 6.96 -2.39 -0.02 2.08 16 28 H 0.09 1.42 8.11 -2.39 -0.02 1.40 16 29 H 0.11 3.60 7.87 -2.40 -0.02 3.58 16 30 H 0.12 3.63 7.75 -2.40 -0.02 3.61 16 31 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 32 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.11 1.71 5.85 -2.38 -0.01 1.69 16 34 H 0.05 1.01 7.31 -2.39 -0.02 0.99 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -70.82 309.55 4.51 -66.31 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 1.03 Total: 7.73 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 4.51 Total: -7.06 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -1.81 Total: -69.80 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.07 Total: -33.41 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.90 Total: 45.78 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.05 Total: -9.55 kcal Total: -70.82 4.51 -66.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701246478.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.943 kcal (2) G-P(sol) polarization free energy of solvation -70.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds