Wall clock time and date at job start Mon Mar 30 2020 04:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86800 * 119.99974 * 2 1 4 4 H 1.48495 * 109.46822 * 266.76401 * 3 2 1 5 5 H 1.48505 * 109.46917 * 26.76521 * 3 2 1 6 6 H 1.48498 * 109.46977 * 146.76327 * 3 2 1 7 7 C 1.40266 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99969 * 350.28153 * 7 2 1 9 9 C 1.40372 * 120.00082 * 170.28128 * 7 2 1 10 10 N 1.33066 * 126.31367 * 351.35645 * 9 7 2 11 11 C 1.32235 * 109.79570 * 180.14535 * 10 9 7 12 12 C 1.50697 * 125.15502 * 179.88329 * 11 10 9 13 13 H 1.09004 * 109.33818 * 345.03582 * 12 11 10 14 14 O 1.42728 * 109.33736 * 225.51632 * 12 11 10 15 15 C 1.43215 * 113.12653 * 187.97103 * 14 12 11 16 16 C 1.52963 * 108.47662 * 70.69167 * 15 14 12 17 17 C 1.50744 * 109.77143 * 310.80947 * 16 15 14 18 18 C 1.38588 * 118.77511 * 196.82390 * 17 16 15 19 19 C 1.38064 * 120.27932 * 180.02562 * 18 17 16 20 20 C 1.38264 * 119.86489 * 0.52705 * 19 18 17 21 21 C 1.38056 * 119.89034 * 359.36204 * 20 19 18 22 22 C 1.37911 * 121.34602 * 16.97812 * 17 16 15 23 23 N 1.31398 * 109.68491 * 359.61415 * 11 10 9 24 24 N 1.37023 * 126.31620 * 171.07619 * 9 7 2 25 25 H 0.97005 * 127.01781 * 359.97438 * 24 9 7 26 26 H 0.97004 * 120.00265 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.63656 * 190.39450 * 15 14 12 28 28 H 1.09004 * 109.63385 * 310.99353 * 15 14 12 29 29 H 1.08998 * 109.42562 * 70.90670 * 16 15 14 30 30 H 1.09005 * 109.42326 * 190.72488 * 16 15 14 31 31 H 1.08002 * 119.85756 * 0.33082 * 18 17 16 32 32 H 1.08009 * 120.07003 * 180.26928 * 19 18 17 33 33 H 1.07993 * 120.05586 * 179.64362 * 20 19 18 34 34 H 1.07996 * 119.85137 * 180.38027 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.5564 2.0068 -1.3978 5 1 1.4053 2.6715 0.6305 6 1 3.5021 1.4609 0.7674 7 6 2.0078 -1.2147 0.0005 8 1 1.4794 -2.1433 0.1589 9 6 3.3964 -1.2235 -0.2047 10 7 4.1458 -0.1860 -0.5686 11 6 5.4101 -0.5602 -0.6698 12 6 6.5528 0.3402 -1.0628 13 1 6.1563 1.2558 -1.5018 14 8 7.3702 -0.3260 -2.0246 15 6 8.5799 0.3810 -2.3210 16 6 9.5027 0.2941 -1.1042 17 6 8.7404 0.6668 0.1417 18 6 9.4509 0.9948 1.2855 19 6 8.7841 1.3405 2.4440 20 6 7.4017 1.3490 2.4664 21 6 6.6932 1.0247 1.3267 22 6 7.3615 0.6832 0.1611 23 7 5.5197 -1.8348 -0.3700 24 7 4.2310 -2.3009 -0.0620 25 1 3.9826 -3.2015 0.1990 26 1 -0.4851 0.8401 -0.0004 27 1 9.0675 -0.0729 -3.1838 28 1 8.3510 1.4254 -2.5333 29 1 9.8800 -0.7240 -1.0073 30 1 10.3405 0.9791 -1.2349 31 1 10.5307 0.9847 1.2691 32 1 9.3413 1.5997 3.3323 33 1 6.8770 1.6133 3.3725 34 1 5.6134 1.0375 1.3432 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705726233.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:45 Heat of formation + Delta-G solvation = 48.230276 kcal Electronic energy + Delta-G solvation = -20486.112642 eV Core-core repulsion = 17384.812909 eV Total energy + Delta-G solvation = -3101.299733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.55659 -39.66237 -37.31473 -33.80008 -33.13057 -31.97029 -30.56547 -30.24612 -29.11276 -26.15709 -25.41450 -23.71313 -22.31703 -20.61743 -20.08717 -19.34083 -17.30408 -16.99705 -16.51850 -15.97159 -15.49617 -15.05029 -14.60652 -14.28084 -14.10763 -13.57909 -13.44321 -13.10170 -12.78932 -12.57621 -12.34045 -11.97606 -11.72813 -11.50831 -11.17474 -11.03736 -10.79595 -10.58581 -10.51146 -9.89684 -9.54610 -9.34339 -8.68224 -8.54911 -8.43895 -8.27737 -8.00983 -6.97292 -4.92260 1.48791 1.57369 2.91479 3.38717 3.42723 3.61533 3.78361 3.91490 4.16463 4.29377 4.39761 4.73713 4.88755 4.95331 5.11593 5.17868 5.21891 5.25756 5.43819 5.49989 5.55506 5.65642 5.84539 5.86229 5.95129 6.15231 6.27463 6.47466 6.61110 6.72040 6.75522 6.86214 7.17451 7.36679 7.47965 7.75701 8.04786 8.07231 8.46745 8.88840 9.69061 9.99824 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.022768 B = 0.006617 C = 0.005985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.517437 B = 4230.647006 C = 4677.619803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.101 3.899 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.321 1.321 6 H -0.246 1.246 7 C -0.432 4.432 8 H 0.099 0.901 9 C 0.401 3.599 10 N -0.628 5.628 11 C 0.241 3.759 12 C 0.231 3.769 13 H 0.089 0.911 14 O -0.359 6.359 15 C 0.058 3.942 16 C -0.113 4.113 17 C -0.072 4.072 18 C -0.126 4.126 19 C -0.120 4.120 20 C -0.126 4.126 21 C -0.093 4.093 22 C -0.097 4.097 23 N -0.362 5.362 24 N -0.553 5.553 25 H 0.423 0.577 26 H 0.291 0.709 27 H 0.099 0.901 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.531 4.553 1.070 15.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.123 4.123 3 Si 0.805 3.195 4 H -0.197 1.197 5 H -0.252 1.252 6 H -0.171 1.171 7 C -0.474 4.474 8 H 0.117 0.883 9 C 0.154 3.846 10 N -0.371 5.371 11 C -0.042 4.042 12 C 0.171 3.829 13 H 0.106 0.894 14 O -0.276 6.276 15 C -0.019 4.019 16 C -0.150 4.150 17 C -0.072 4.072 18 C -0.144 4.144 19 C -0.138 4.138 20 C -0.144 4.144 21 C -0.111 4.111 22 C -0.099 4.099 23 N -0.196 5.196 24 N -0.271 5.271 25 H 0.265 0.735 26 H 0.101 0.899 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 14.875 4.352 0.882 15.524 hybrid contribution -0.198 0.137 0.404 0.470 sum 14.677 4.489 1.286 15.402 Atomic orbital electron populations 1.69512 1.08414 1.31122 1.33617 1.26059 0.94846 1.02613 0.88826 0.85079 0.78086 0.75830 0.80552 1.19655 1.25203 1.17068 1.18261 0.86589 0.96684 1.45829 0.88331 1.20844 0.92546 0.81369 0.89850 1.69860 1.01426 1.29065 1.36772 1.22479 0.91795 0.90784 0.99141 1.18640 0.85713 0.92549 0.86045 0.89398 1.88181 1.32030 1.48031 1.59354 1.22622 0.85432 0.97136 0.96695 1.21117 0.98204 1.02719 0.92952 1.19441 0.92596 0.99498 0.95668 1.20930 0.99299 1.01461 0.92719 1.21047 0.94487 1.00434 0.97792 1.21086 0.94208 1.00867 0.98195 1.21315 1.01143 0.96660 0.91967 1.20036 0.93320 1.00308 0.96202 1.77763 0.99917 1.11930 1.29946 1.47732 1.04480 1.11894 1.63027 0.73471 0.89904 0.88265 0.92668 0.89708 0.89989 0.86286 0.86306 0.86127 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.83 13.92 55.56 0.77 -20.05 16 2 C 0.10 2.63 5.52 -17.29 -0.10 2.54 16 3 Si 0.97 23.07 25.92 -169.99 -4.41 18.67 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.32 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.25 -5.93 5.72 56.52 0.32 -5.61 16 7 C -0.43 -11.40 10.03 -38.02 -0.38 -11.78 16 8 H 0.10 2.59 8.06 -52.48 -0.42 2.17 16 9 C 0.40 10.36 7.39 -155.87 -1.15 9.21 16 10 N -0.63 -16.20 6.35 -10.11 -0.06 -16.27 16 11 C 0.24 5.82 5.76 -157.15 -0.91 4.92 16 12 C 0.23 4.68 3.27 -29.06 -0.10 4.59 16 13 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 14 O -0.36 -6.80 10.41 -35.23 -0.37 -7.16 16 15 C 0.06 0.77 6.85 37.14 0.25 1.03 16 16 C -0.11 -1.39 6.00 -27.88 -0.17 -1.56 16 17 C -0.07 -1.10 5.78 -104.59 -0.60 -1.70 16 18 C -0.13 -1.68 9.67 -39.52 -0.38 -2.06 16 19 C -0.12 -1.60 10.05 -39.64 -0.40 -2.00 16 20 C -0.13 -1.94 10.05 -39.64 -0.40 -2.34 16 21 C -0.09 -1.73 9.10 -39.50 -0.36 -2.09 16 22 C -0.10 -1.79 5.46 -104.62 -0.57 -2.36 16 23 N -0.36 -8.94 12.80 32.36 0.41 -8.52 16 24 N -0.55 -13.15 7.58 31.10 0.24 -12.92 16 25 H 0.42 8.62 8.96 -182.32 -1.63 6.99 16 26 H 0.29 6.88 8.29 -40.82 -0.34 6.54 16 27 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 33 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.13 2.79 6.71 -52.49 -0.35 2.43 16 LS Contribution 288.68 15.07 4.35 4.35 Total: -1.00 -30.83 288.68 -9.32 -40.15 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.00 Total: 5.36 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -5.26 Total: -3.61 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 1.36 Total: -57.76 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.37 Total: -7.16 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.41 Total: 18.67 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.83 -9.32 -40.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705726233.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.383 kcal (2) G-P(sol) polarization free energy of solvation -30.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds