Wall clock time and date at job start Mon Mar 30 2020 04:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86800 * 119.99974 * 2 1 4 4 H 1.48495 * 109.46822 * 266.76401 * 3 2 1 5 5 H 1.48505 * 109.46917 * 26.76521 * 3 2 1 6 6 H 1.48498 * 109.46977 * 146.76327 * 3 2 1 7 7 C 1.40266 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99969 * 350.28153 * 7 2 1 9 9 C 1.40372 * 120.00082 * 170.28128 * 7 2 1 10 10 N 1.33066 * 126.31367 * 351.35645 * 9 7 2 11 11 C 1.32235 * 109.79570 * 180.14535 * 10 9 7 12 12 C 1.50697 * 125.15502 * 179.88329 * 11 10 9 13 13 H 1.09004 * 109.33818 * 345.03582 * 12 11 10 14 14 O 1.42728 * 109.33736 * 225.51632 * 12 11 10 15 15 C 1.43215 * 113.12653 * 187.97103 * 14 12 11 16 16 C 1.52963 * 108.47662 * 70.69167 * 15 14 12 17 17 C 1.50744 * 109.77143 * 310.80947 * 16 15 14 18 18 C 1.38588 * 118.77511 * 196.82390 * 17 16 15 19 19 C 1.38064 * 120.27932 * 180.02562 * 18 17 16 20 20 C 1.38264 * 119.86489 * 0.52705 * 19 18 17 21 21 C 1.38056 * 119.89034 * 359.36204 * 20 19 18 22 22 C 1.37911 * 121.34602 * 16.97812 * 17 16 15 23 23 N 1.31398 * 109.68491 * 359.61415 * 11 10 9 24 24 N 1.37023 * 126.31620 * 171.07619 * 9 7 2 25 25 H 0.97005 * 127.01781 * 359.97438 * 24 9 7 26 26 H 0.97004 * 120.00265 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.63656 * 190.39450 * 15 14 12 28 28 H 1.09004 * 109.63385 * 310.99353 * 15 14 12 29 29 H 1.08998 * 109.42562 * 70.90670 * 16 15 14 30 30 H 1.09005 * 109.42326 * 190.72488 * 16 15 14 31 31 H 1.08002 * 119.85756 * 0.33082 * 18 17 16 32 32 H 1.08009 * 120.07003 * 180.26928 * 19 18 17 33 33 H 1.07993 * 120.05586 * 179.64362 * 20 19 18 34 34 H 1.07996 * 119.85137 * 180.38027 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.5564 2.0068 -1.3978 5 1 1.4053 2.6715 0.6305 6 1 3.5021 1.4609 0.7674 7 6 2.0078 -1.2147 0.0005 8 1 1.4794 -2.1433 0.1589 9 6 3.3964 -1.2235 -0.2047 10 7 4.1458 -0.1860 -0.5686 11 6 5.4101 -0.5602 -0.6698 12 6 6.5528 0.3402 -1.0628 13 1 6.1563 1.2558 -1.5018 14 8 7.3702 -0.3260 -2.0246 15 6 8.5799 0.3810 -2.3210 16 6 9.5027 0.2941 -1.1042 17 6 8.7404 0.6668 0.1417 18 6 9.4509 0.9948 1.2855 19 6 8.7841 1.3405 2.4440 20 6 7.4017 1.3490 2.4664 21 6 6.6932 1.0247 1.3267 22 6 7.3615 0.6832 0.1611 23 7 5.5197 -1.8348 -0.3700 24 7 4.2310 -2.3009 -0.0620 25 1 3.9826 -3.2015 0.1990 26 1 -0.4851 0.8401 -0.0004 27 1 9.0675 -0.0729 -3.1838 28 1 8.3510 1.4254 -2.5333 29 1 9.8800 -0.7240 -1.0073 30 1 10.3405 0.9791 -1.2349 31 1 10.5307 0.9847 1.2691 32 1 9.3413 1.5997 3.3323 33 1 6.8770 1.6133 3.3725 34 1 5.6134 1.0375 1.3432 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705726233.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:45 Heat of formation + Delta-G solvation = 28.570399 kcal Electronic energy + Delta-G solvation = -20486.965158 eV Core-core repulsion = 17384.812909 eV Total energy + Delta-G solvation = -3102.152249 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.29351 -41.07039 -38.54738 -35.75317 -34.48620 -33.32801 -32.44770 -31.88602 -30.33140 -28.02170 -26.93204 -24.80159 -23.61008 -22.52835 -21.49612 -20.81853 -19.31174 -18.46626 -18.17398 -17.31093 -16.79732 -16.44967 -16.18321 -15.78021 -15.58979 -14.99699 -14.88387 -14.61716 -14.30678 -14.07310 -13.71946 -13.42005 -13.04691 -12.95230 -12.80629 -12.71851 -12.60553 -12.00347 -11.81289 -11.61130 -11.39072 -10.81497 -10.54297 -10.23677 -9.98108 -9.74479 -9.58636 -8.99090 -6.96642 0.31358 0.40656 0.96319 1.44590 1.53957 1.67674 2.06000 2.29977 2.43695 2.66722 2.85517 3.15695 3.55060 3.61261 3.79318 3.91413 4.04787 4.14467 4.23230 4.33742 4.51880 4.56068 4.59676 4.72815 4.86862 4.91595 4.96559 5.03987 5.17609 5.46093 5.50296 5.55857 5.63702 5.79843 5.95165 6.05212 6.11806 6.18205 6.45704 6.97105 7.73908 8.02770 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.022768 B = 0.006617 C = 0.005985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.517437 B = 4230.647006 C = 4677.619803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.078 3.922 3 Si 1.016 2.984 4 H -0.282 1.282 5 H -0.303 1.303 6 H -0.260 1.260 7 C -0.450 4.450 8 H 0.091 0.909 9 C 0.390 3.610 10 N -0.644 5.644 11 C 0.238 3.762 12 C 0.233 3.767 13 H 0.081 0.919 14 O -0.386 6.386 15 C 0.047 3.953 16 C -0.108 4.108 17 C -0.078 4.078 18 C -0.118 4.118 19 C -0.110 4.110 20 C -0.134 4.134 21 C -0.124 4.124 22 C -0.123 4.123 23 N -0.376 5.376 24 N -0.547 5.547 25 H 0.435 0.565 26 H 0.302 0.698 27 H 0.128 0.872 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.123 0.877 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.134 0.866 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.784 5.511 1.491 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.145 4.145 3 Si 0.846 3.154 4 H -0.209 1.209 5 H -0.233 1.233 6 H -0.185 1.185 7 C -0.491 4.491 8 H 0.109 0.891 9 C 0.141 3.859 10 N -0.387 5.387 11 C -0.045 4.045 12 C 0.172 3.828 13 H 0.099 0.901 14 O -0.304 6.304 15 C -0.029 4.029 16 C -0.145 4.145 17 C -0.078 4.078 18 C -0.136 4.136 19 C -0.128 4.128 20 C -0.152 4.152 21 C -0.143 4.143 22 C -0.124 4.124 23 N -0.209 5.209 24 N -0.267 5.267 25 H 0.280 0.720 26 H 0.113 0.887 27 H 0.146 0.854 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.141 0.859 31 H 0.179 0.821 32 H 0.175 0.825 33 H 0.152 0.848 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 18.120 5.297 1.309 18.924 hybrid contribution -1.103 -0.192 0.272 1.152 sum 17.017 5.105 1.581 17.836 Atomic orbital electron populations 1.69488 1.08757 1.32363 1.33923 1.26483 0.95325 1.03996 0.88712 0.84461 0.76995 0.74349 0.79582 1.20859 1.23260 1.18505 1.18312 0.86989 0.96778 1.47049 0.89121 1.20903 0.92643 0.82188 0.90122 1.69856 1.02439 1.29444 1.36956 1.23248 0.92353 0.91000 0.97904 1.18569 0.85461 0.91167 0.87593 0.90144 1.88117 1.34020 1.49249 1.59019 1.23049 0.83714 0.97741 0.98397 1.21194 0.98541 1.03915 0.90806 1.19849 0.91441 0.98681 0.97846 1.21425 1.01289 0.99278 0.91566 1.21500 0.93472 0.98463 0.99340 1.21306 0.95627 1.00725 0.97537 1.21168 0.99548 0.99621 0.93938 1.19962 0.94794 1.02565 0.95127 1.77703 1.00119 1.12527 1.30551 1.47725 1.04140 1.12296 1.62525 0.71991 0.88694 0.85433 0.91588 0.89351 0.85907 0.82145 0.82470 0.84838 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.86 13.92 21.88 0.30 -42.56 16 2 C 0.08 4.12 5.52 85.36 0.47 4.59 16 3 Si 1.02 48.51 25.92 68.60 1.78 50.28 16 4 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16 5 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.26 -12.96 5.72 99.48 0.57 -12.39 16 7 C -0.45 -24.39 10.03 23.28 0.23 -24.16 16 8 H 0.09 4.93 8.06 -2.91 -0.02 4.91 16 9 C 0.39 20.76 7.39 133.83 0.99 21.75 16 10 N -0.64 -34.27 6.35 -185.91 -1.18 -35.45 16 11 C 0.24 11.81 5.76 138.73 0.80 12.61 16 12 C 0.23 9.59 3.27 29.09 0.10 9.69 16 13 H 0.08 3.29 8.14 -2.38 -0.02 3.27 16 14 O -0.39 -14.44 10.41 -148.98 -1.55 -15.99 16 15 C 0.05 1.12 6.85 71.97 0.49 1.62 16 16 C -0.11 -2.24 6.00 29.85 0.18 -2.06 16 17 C -0.08 -2.17 5.78 -19.84 -0.11 -2.29 16 18 C -0.12 -2.62 9.67 22.31 0.22 -2.40 16 19 C -0.11 -2.52 10.05 22.23 0.22 -2.30 16 20 C -0.13 -3.98 10.05 22.23 0.22 -3.75 16 21 C -0.12 -4.73 9.10 22.32 0.20 -4.52 16 22 C -0.12 -4.49 5.46 -19.86 -0.11 -4.60 16 23 N -0.38 -18.90 12.80 -51.55 -0.66 -19.56 16 24 N -0.55 -26.65 7.58 -55.50 -0.42 -27.07 16 25 H 0.44 18.14 8.96 -213.08 -1.91 16.23 16 26 H 0.30 14.26 8.29 -92.71 -0.77 13.49 16 27 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.07 1.43 8.07 -2.38 -0.02 1.41 16 29 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.12 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 32 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 34 H 0.09 4.19 6.71 -2.91 -0.02 4.17 16 Total: -1.00 -68.53 288.68 1.27 -67.26 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -0.91 Total: 18.92 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 3.90 Total: 4.16 kcal Atomic # 7 Polarization: -122.68 SS G_CDS: -1.96 Total: -124.63 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -1.55 Total: -15.99 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 1.78 Total: 50.28 kcal Total: -68.53 1.27 -67.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705726233.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.830 kcal (2) G-P(sol) polarization free energy of solvation -68.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds