Wall clock time and date at job start Mon Mar 30 2020 04:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47544 * 2 1 4 4 H 1.09004 * 109.66751 * 305.49940 * 3 2 1 5 5 C 1.53391 * 109.67836 * 184.99968 * 3 2 1 6 6 N 1.46853 * 108.77651 * 190.83954 * 5 3 2 7 7 C 1.34778 * 120.38356 * 237.61926 * 6 5 3 8 8 O 1.21278 * 119.99748 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00209 * 180.02562 * 7 6 5 10 10 S 1.80999 * 109.47181 * 180.02562 * 9 7 6 11 11 C 1.76199 * 99.99825 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00405 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99855 * 179.72221 * 11 10 9 14 14 N 1.31630 * 119.99849 * 180.27695 * 13 11 10 15 15 Si 1.86800 * 120.00065 * 0.28024 * 13 11 10 16 16 H 1.48498 * 109.47118 * 89.99557 * 15 13 11 17 17 H 1.48499 * 109.47134 * 210.00077 * 15 13 11 18 18 H 1.48507 * 109.46904 * 329.99899 * 15 13 11 19 19 C 1.46859 * 119.23480 * 57.89735 * 6 5 3 20 20 C 1.53896 * 108.50986 * 302.06990 * 19 6 5 21 21 C 1.51296 * 108.36832 * 49.64945 * 20 19 6 22 22 O 1.20756 * 120.80692 * 126.88678 * 21 20 19 23 23 H 1.09006 * 109.47051 * 60.00026 * 1 2 3 24 24 H 1.08995 * 109.47275 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47258 * 300.00478 * 1 2 3 26 26 H 1.09002 * 109.47528 * 240.00095 * 2 1 3 27 27 H 1.09001 * 109.47313 * 120.00368 * 2 1 3 28 28 H 1.09006 * 109.58755 * 71.04894 * 5 3 2 29 29 H 1.09001 * 109.58543 * 310.63140 * 5 3 2 30 30 H 1.08999 * 109.47278 * 59.99800 * 9 7 6 31 31 H 1.09002 * 109.46837 * 300.00183 * 9 7 6 32 32 H 0.97005 * 119.99878 * 180.02562 * 14 13 11 33 33 H 1.08995 * 109.58986 * 61.89010 * 19 6 5 34 34 H 1.09004 * 109.58200 * 182.31625 * 19 6 5 35 35 H 1.08996 * 109.80993 * 289.86435 * 20 19 6 36 36 H 1.08997 * 109.58781 * 169.30094 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6005 1.9871 -0.8357 5 6 3.5688 1.4498 -0.1259 6 7 4.0582 2.8094 0.1359 7 6 4.7906 3.4603 -0.7896 8 8 5.0486 2.9234 -1.8460 9 6 5.2889 4.8550 -0.5117 10 16 6.2327 5.4534 -1.9355 11 6 6.6803 7.0555 -1.3545 12 1 6.3645 7.3823 -0.3748 13 6 7.4441 7.8951 -2.1534 14 7 7.7831 9.0898 -1.7171 15 14 7.9910 7.3296 -3.8476 16 1 6.9672 7.7141 -4.8522 17 1 9.2857 7.9713 -4.1897 18 1 8.1547 5.8536 -3.8478 19 6 3.7455 3.4494 1.4202 20 6 2.2160 3.4959 1.5833 21 6 1.6642 2.1156 1.3018 22 8 0.9417 1.5644 2.0970 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.8540 1.1464 -1.1333 29 1 3.9986 0.7604 0.6009 30 1 5.9293 4.8431 0.3702 31 1 4.4400 5.5157 -0.3353 32 1 8.3166 9.6768 -2.2756 33 1 4.1851 2.8714 2.2331 34 1 4.1471 4.4627 1.4308 35 1 1.7911 4.2116 0.8795 36 1 1.9660 3.7903 2.6026 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706338064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:16 Heat of formation + Delta-G solvation = -80.755353 kcal Electronic energy + Delta-G solvation = -18643.205852 eV Core-core repulsion = 15639.464082 eV Total energy + Delta-G solvation = -3003.741770 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.76257 -39.17828 -36.34908 -34.76460 -32.48191 -31.28541 -30.76392 -28.60896 -25.67277 -24.52979 -24.01351 -22.40940 -20.09612 -18.89368 -17.75520 -17.02873 -16.50767 -16.02675 -15.63256 -15.28946 -15.00304 -14.82248 -14.10508 -13.93375 -13.77639 -13.52761 -13.29533 -12.85880 -12.67496 -12.52607 -12.14735 -12.06808 -11.73289 -11.50544 -11.35019 -11.28310 -11.15877 -11.04539 -10.64409 -9.90217 -9.70823 -9.47302 -9.04796 -8.84585 -8.54872 -6.97691 -6.33072 -4.05606 1.65037 2.56830 2.80293 3.06383 3.29890 3.46991 3.51979 3.71887 4.28175 4.32356 4.43766 4.47604 4.66564 4.71427 4.86079 4.94524 5.00597 5.06147 5.14824 5.30747 5.32385 5.40880 5.50673 5.52631 5.60756 5.65885 5.68254 5.78146 5.89707 5.94013 6.10179 6.34188 7.18624 7.28651 7.89778 8.28118 8.36970 9.13019 10.76076 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.039575 B = 0.004071 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.350292 B = 6876.581319 C = 7330.557864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.108 4.108 3 C -0.154 4.154 4 H 0.109 0.891 5 C 0.124 3.876 6 N -0.624 5.624 7 C 0.536 3.464 8 O -0.513 6.513 9 C -0.124 4.124 10 S -0.141 6.141 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.096 3.904 14 N -0.880 5.880 15 Si 0.856 3.144 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 C 0.114 3.886 20 C -0.187 4.187 21 C 0.367 3.633 22 O -0.449 6.449 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.106 0.894 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.271 0.729 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.767 -14.590 6.460 19.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.146 4.146 3 C -0.173 4.173 4 H 0.127 0.873 5 C 0.001 3.999 6 N -0.360 5.360 7 C 0.324 3.676 8 O -0.387 6.387 9 C -0.275 4.275 10 S 0.085 5.915 11 C -0.670 4.670 12 H 0.107 0.893 13 C -0.113 4.113 14 N -0.516 5.516 15 Si 0.681 3.319 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 C -0.010 4.010 20 C -0.226 4.226 21 C 0.242 3.758 22 O -0.322 6.322 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.124 0.876 29 H 0.090 0.910 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.647 -15.496 5.278 20.091 hybrid contribution 0.015 0.866 0.536 1.019 sum -11.632 -14.630 5.814 19.574 Atomic orbital electron populations 1.21901 0.95196 1.02005 1.02607 1.21346 0.96738 0.93848 1.02631 1.22385 0.97897 0.98656 0.98411 0.87266 1.21546 0.90448 0.83492 1.04431 1.48123 1.54605 1.16177 1.17079 1.20361 0.76926 0.87339 0.83008 1.90698 1.55771 1.67912 1.24320 1.23334 1.03914 0.94862 1.05344 1.84827 1.66451 1.19125 1.21102 1.22298 1.39599 0.98164 1.06918 0.89350 1.24711 0.94211 0.93959 0.98374 1.69936 1.36363 1.07570 1.37729 0.86742 0.79110 0.81895 0.84152 1.19188 1.19908 1.15902 1.21811 0.93050 1.00531 0.85590 1.22841 0.97529 0.97055 1.05176 1.24736 0.76551 0.87984 0.86566 1.90354 1.28922 1.65500 1.47397 0.93075 0.92684 0.91065 0.91019 0.91389 0.87559 0.90997 0.88304 0.88355 0.91890 0.90495 0.87719 0.87649 0.88047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.68 37.16 0.36 -1.04 16 2 C -0.11 -0.92 5.07 -26.73 -0.14 -1.05 16 3 C -0.15 -1.43 2.63 -91.27 -0.24 -1.67 16 4 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 5 C 0.12 1.29 5.76 -3.65 -0.02 1.27 16 6 N -0.62 -7.54 2.90 -172.32 -0.50 -8.04 16 7 C 0.54 8.90 7.71 -10.99 -0.08 8.81 16 8 O -0.51 -10.38 15.24 5.56 0.08 -10.30 16 9 C -0.12 -2.24 4.48 36.00 0.16 -2.08 16 10 S -0.14 -3.46 18.54 -107.50 -1.99 -5.45 16 11 C -0.52 -14.59 10.04 30.94 0.31 -14.28 16 12 H 0.09 2.56 8.03 -52.49 -0.42 2.14 16 13 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 14 N -0.88 -26.05 13.97 55.49 0.78 -25.28 16 15 Si 0.86 21.32 27.74 -169.99 -4.72 16.60 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.24 -5.83 6.73 56.52 0.38 -5.45 16 19 C 0.11 1.04 6.40 -3.38 -0.02 1.02 16 20 C -0.19 -1.56 6.36 -27.12 -0.17 -1.73 16 21 C 0.37 3.63 6.35 -28.45 -0.18 3.45 16 22 O -0.45 -5.47 14.76 6.00 0.09 -5.39 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.73 5.85 -51.93 -0.30 0.43 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 28 H 0.11 1.25 6.96 -51.93 -0.36 0.89 16 29 H 0.07 0.66 8.12 -51.93 -0.42 0.23 16 30 H 0.10 1.65 7.85 -51.92 -0.41 1.24 16 31 H 0.10 1.62 7.77 -51.91 -0.40 1.22 16 32 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.94 5.86 -51.93 -0.30 0.63 16 35 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 307.86 15.07 4.64 4.64 Total: -1.00 -33.03 307.86 -6.90 -39.93 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -5.16 Total: -2.08 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -0.12 Total: -4.65 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.28 Total: -33.32 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.17 Total: -15.68 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.72 Total: 16.60 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.99 Total: -5.45 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.03 -6.90 -39.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706338064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.827 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds