Wall clock time and date at job start Mon Mar 30 2020 04:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47544 * 2 1 4 4 H 1.09004 * 109.66751 * 305.49940 * 3 2 1 5 5 C 1.53391 * 109.67836 * 184.99968 * 3 2 1 6 6 N 1.46853 * 108.77651 * 190.83954 * 5 3 2 7 7 C 1.34778 * 120.38356 * 237.61926 * 6 5 3 8 8 O 1.21278 * 119.99748 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00209 * 180.02562 * 7 6 5 10 10 S 1.80999 * 109.47181 * 180.02562 * 9 7 6 11 11 C 1.76199 * 99.99825 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00405 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99855 * 179.72221 * 11 10 9 14 14 N 1.31630 * 119.99849 * 180.27695 * 13 11 10 15 15 Si 1.86800 * 120.00065 * 0.28024 * 13 11 10 16 16 H 1.48498 * 109.47118 * 89.99557 * 15 13 11 17 17 H 1.48499 * 109.47134 * 210.00077 * 15 13 11 18 18 H 1.48507 * 109.46904 * 329.99899 * 15 13 11 19 19 C 1.46859 * 119.23480 * 57.89735 * 6 5 3 20 20 C 1.53896 * 108.50986 * 302.06990 * 19 6 5 21 21 C 1.51296 * 108.36832 * 49.64945 * 20 19 6 22 22 O 1.20756 * 120.80692 * 126.88678 * 21 20 19 23 23 H 1.09006 * 109.47051 * 60.00026 * 1 2 3 24 24 H 1.08995 * 109.47275 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47258 * 300.00478 * 1 2 3 26 26 H 1.09002 * 109.47528 * 240.00095 * 2 1 3 27 27 H 1.09001 * 109.47313 * 120.00368 * 2 1 3 28 28 H 1.09006 * 109.58755 * 71.04894 * 5 3 2 29 29 H 1.09001 * 109.58543 * 310.63140 * 5 3 2 30 30 H 1.08999 * 109.47278 * 59.99800 * 9 7 6 31 31 H 1.09002 * 109.46837 * 300.00183 * 9 7 6 32 32 H 0.97005 * 119.99878 * 180.02562 * 14 13 11 33 33 H 1.08995 * 109.58986 * 61.89010 * 19 6 5 34 34 H 1.09004 * 109.58200 * 182.31625 * 19 6 5 35 35 H 1.08996 * 109.80993 * 289.86435 * 20 19 6 36 36 H 1.08997 * 109.58781 * 169.30094 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6005 1.9871 -0.8357 5 6 3.5688 1.4498 -0.1259 6 7 4.0582 2.8094 0.1359 7 6 4.7906 3.4603 -0.7896 8 8 5.0486 2.9234 -1.8460 9 6 5.2889 4.8550 -0.5117 10 16 6.2327 5.4534 -1.9355 11 6 6.6803 7.0555 -1.3545 12 1 6.3645 7.3823 -0.3748 13 6 7.4441 7.8951 -2.1534 14 7 7.7831 9.0898 -1.7171 15 14 7.9910 7.3296 -3.8476 16 1 6.9672 7.7141 -4.8522 17 1 9.2857 7.9713 -4.1897 18 1 8.1547 5.8536 -3.8478 19 6 3.7455 3.4494 1.4202 20 6 2.2160 3.4959 1.5833 21 6 1.6642 2.1156 1.3018 22 8 0.9417 1.5644 2.0970 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.8540 1.1464 -1.1333 29 1 3.9986 0.7604 0.6009 30 1 5.9293 4.8431 0.3702 31 1 4.4400 5.5157 -0.3353 32 1 8.3166 9.6768 -2.2756 33 1 4.1851 2.8714 2.2331 34 1 4.1471 4.4627 1.4308 35 1 1.7911 4.2116 0.8795 36 1 1.9660 3.7903 2.6026 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706338064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:15 Heat of formation + Delta-G solvation = -101.775225 kcal Electronic energy + Delta-G solvation = -18644.117342 eV Core-core repulsion = 15639.464082 eV Total energy + Delta-G solvation = -3004.653260 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.69658 -40.28773 -37.40628 -35.55620 -34.65210 -32.21071 -31.81334 -29.70659 -27.83459 -25.37909 -24.90458 -23.17518 -21.11464 -20.09964 -19.38085 -18.26965 -17.36881 -17.17787 -16.98095 -16.74740 -16.23056 -15.77231 -15.53381 -15.09269 -14.94224 -14.71233 -14.46989 -14.10845 -13.63819 -13.49856 -13.31164 -13.25323 -13.00215 -12.86003 -12.67264 -12.44872 -12.27057 -12.05420 -11.87501 -11.83221 -11.15454 -10.99283 -10.51105 -10.31164 -9.87499 -8.97835 -8.49824 -6.20304 0.85356 0.98832 1.32904 1.46793 1.51435 1.54483 1.98287 2.26299 2.68956 2.88891 2.97789 3.45090 3.62485 3.71311 3.90606 3.97913 4.15719 4.22860 4.25663 4.37427 4.43689 4.56995 4.59968 4.70286 4.74661 4.83550 4.87415 4.94961 5.11247 5.24309 5.38618 5.41576 5.72632 6.12563 6.14100 6.45597 6.95839 7.03268 8.62378 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.039575 B = 0.004071 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.350292 B = 6876.581319 C = 7330.557864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.106 4.106 3 C -0.148 4.148 4 H 0.109 0.891 5 C 0.124 3.876 6 N -0.610 5.610 7 C 0.539 3.461 8 O -0.556 6.556 9 C -0.110 4.110 10 S -0.178 6.178 11 C -0.526 4.526 12 H 0.065 0.935 13 C 0.046 3.954 14 N -0.918 5.918 15 Si 0.912 3.088 16 H -0.263 1.263 17 H -0.261 1.261 18 H -0.236 1.236 19 C 0.108 3.892 20 C -0.181 4.181 21 C 0.369 3.631 22 O -0.471 6.471 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.276 0.724 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.433 -15.757 6.910 21.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.144 4.144 3 C -0.168 4.168 4 H 0.127 0.873 5 C 0.002 3.998 6 N -0.344 5.344 7 C 0.327 3.673 8 O -0.434 6.434 9 C -0.261 4.261 10 S 0.049 5.951 11 C -0.674 4.674 12 H 0.083 0.917 13 C -0.159 4.159 14 N -0.556 5.556 15 Si 0.734 3.266 16 H -0.188 1.188 17 H -0.186 1.186 18 H -0.160 1.160 19 C -0.014 4.014 20 C -0.220 4.220 21 C 0.246 3.754 22 O -0.346 6.346 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.336 -16.671 5.770 21.526 hybrid contribution 0.104 1.160 0.552 1.289 sum -12.231 -15.511 6.322 20.740 Atomic orbital electron populations 1.21873 0.95315 1.02418 1.01948 1.21346 0.96571 0.93352 1.03124 1.22341 0.96915 0.99290 0.98270 0.87283 1.21663 0.91209 0.82600 1.04347 1.48081 1.52784 1.16523 1.17033 1.20025 0.77408 0.86683 0.83160 1.90689 1.57871 1.68606 1.26221 1.23326 1.03898 0.96235 1.02594 1.84765 1.68093 1.17133 1.25124 1.22457 1.39040 0.99911 1.05974 0.91684 1.25539 0.94470 0.94096 1.01822 1.70015 1.37501 1.08727 1.39316 0.85896 0.79227 0.81412 0.80030 1.18756 1.18588 1.15966 1.22088 0.93846 1.01002 0.84477 1.22828 0.96580 0.96147 1.06417 1.24953 0.75882 0.88402 0.86199 1.90363 1.30005 1.66167 1.48043 0.92730 0.91810 0.92645 0.89941 0.91471 0.88860 0.89098 0.86606 0.86478 0.91425 0.88335 0.87228 0.87019 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.68 71.98 0.70 -1.83 16 2 C -0.11 -1.60 5.07 30.59 0.16 -1.45 16 3 C -0.15 -2.45 2.63 -11.22 -0.03 -2.48 16 4 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 5 C 0.12 2.32 5.76 86.44 0.50 2.82 16 6 N -0.61 -13.26 2.90 -817.50 -2.37 -15.63 16 7 C 0.54 17.02 7.71 87.66 0.68 17.70 16 8 O -0.56 -22.07 15.24 -3.02 -0.05 -22.12 16 9 C -0.11 -3.79 4.48 71.23 0.32 -3.47 16 10 S -0.18 -8.59 18.54 -56.49 -1.05 -9.64 16 11 C -0.53 -29.55 10.04 67.96 0.68 -28.87 16 12 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 13 C 0.05 2.64 5.50 84.86 0.47 3.11 16 14 N -0.92 -54.80 13.97 21.65 0.30 -54.50 16 15 Si 0.91 43.97 27.74 68.60 1.90 45.87 16 16 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16 17 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.24 -11.31 6.73 99.48 0.67 -10.64 16 19 C 0.11 1.63 6.40 86.61 0.55 2.18 16 20 C -0.18 -2.47 6.36 30.34 0.19 -2.28 16 21 C 0.37 6.45 6.35 29.48 0.19 6.63 16 22 O -0.47 -10.60 14.76 -1.44 -0.02 -10.63 16 23 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 24 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.05 1.08 5.85 -2.39 -0.01 1.06 16 26 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.04 8.07 -2.39 -0.02 1.02 16 28 H 0.09 2.07 6.96 -2.38 -0.02 2.05 16 29 H 0.09 1.40 8.12 -2.39 -0.02 1.38 16 30 H 0.12 3.63 7.85 -2.39 -0.02 3.61 16 31 H 0.12 3.62 7.77 -2.39 -0.02 3.60 16 32 H 0.28 15.30 8.31 -92.70 -0.77 14.53 16 33 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 1.60 5.86 -2.38 -0.01 1.58 16 35 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -71.21 307.86 4.15 -67.06 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.03 Total: 7.52 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 4.40 Total: -7.94 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -2.07 Total: -70.13 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -0.07 Total: -32.74 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.90 Total: 45.87 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.05 Total: -9.64 kcal Total: -71.21 4.15 -67.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706338064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.718 kcal (2) G-P(sol) polarization free energy of solvation -71.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds