Wall clock time and date at job start Mon Mar 30 2020 04:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31362 * 1 3 3 Si 1.86800 * 120.00377 * 2 1 4 4 H 1.48497 * 109.47124 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47335 * 120.00109 * 3 2 1 6 6 H 1.48507 * 109.46985 * 240.00033 * 3 2 1 7 7 C 1.39050 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00051 * 200.26723 * 7 2 1 9 9 N 1.36850 * 119.99905 * 20.27244 * 7 2 1 10 10 C 1.34777 * 120.00107 * 43.50979 * 9 7 2 11 11 O 1.21627 * 120.00123 * 355.67313 * 10 9 7 12 12 C 1.47520 * 119.99990 * 175.68079 * 10 9 7 13 13 C 1.41038 * 119.35262 * 148.07258 * 12 10 9 14 14 C 1.35223 * 121.57280 * 179.97438 * 13 12 10 15 15 C 1.41350 * 119.89280 * 0.02562 * 14 13 12 16 16 C 1.38091 * 134.48951 * 179.97438 * 15 14 13 17 17 N 1.34109 * 107.97579 * 180.02562 * 16 15 14 18 18 H 0.96996 * 125.03253 * 180.02562 * 17 16 15 19 19 N 1.39955 * 109.94767 * 359.97438 * 17 16 15 20 20 C 1.32234 * 108.88550 * 0.02562 * 19 17 16 21 21 C 1.38204 * 119.35378 * 327.79898 * 12 10 9 22 22 C 1.46500 * 120.00137 * 223.50662 * 9 7 2 23 23 C 1.53000 * 117.49830 * 6.37908 * 22 9 7 24 24 C 1.52996 * 59.99998 * 252.50961 * 23 22 9 25 25 H 0.97002 * 119.99985 * 354.94887 * 1 2 3 26 26 H 1.07995 * 119.21398 * 359.97438 * 13 12 10 27 27 H 1.08005 * 120.04862 * 180.02562 * 14 13 12 28 28 H 1.08002 * 126.01560 * 359.97438 * 16 15 14 29 29 H 1.07997 * 120.30148 * 359.97438 * 21 12 10 30 30 H 1.09000 * 115.55040 * 152.08778 * 22 9 7 31 31 H 1.09002 * 117.49557 * 359.97438 * 23 22 9 32 32 H 1.09003 * 117.49883 * 145.01801 * 23 22 9 33 33 H 1.09005 * 117.50224 * 252.50732 * 24 23 22 34 34 H 1.09008 * 117.51960 * 107.47784 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 1.2828 2.7464 -0.0006 5 1 3.1015 1.6963 1.2125 6 1 3.1015 1.6963 -1.2126 7 6 2.0088 -1.2042 0.0005 8 1 3.0386 -1.2331 0.3245 9 7 1.3881 -2.3528 -0.4096 10 6 0.6131 -2.3432 -1.5123 11 8 0.4017 -1.2984 -2.0979 12 6 0.0212 -3.5999 -2.0088 13 6 -1.2322 -3.5660 -2.6546 14 6 -1.8157 -4.6905 -3.1274 15 6 -1.1666 -5.9372 -2.9780 16 6 -1.4729 -7.2363 -3.3325 17 7 -0.4660 -8.0241 -2.9276 18 1 -0.4264 -8.9852 -3.0519 19 7 0.5200 -7.2542 -2.2999 20 6 0.1418 -5.9871 -2.3058 21 6 0.7084 -4.7867 -1.8371 22 6 1.5659 -3.5929 0.3499 23 6 2.3327 -3.5083 1.6712 24 6 2.9822 -4.1629 0.4503 25 1 -0.4850 0.8368 0.0740 26 1 -1.7380 -2.6194 -2.7743 27 1 -2.7761 -4.6360 -3.6184 28 1 -2.3665 -7.5609 -3.8449 29 1 1.6695 -4.7935 -1.3446 30 1 0.7407 -4.3027 0.2910 31 1 2.7052 -2.5300 1.9751 32 1 2.0119 -4.1624 2.4820 33 1 3.0888 -5.2477 0.4579 34 1 3.7816 -3.6154 -0.0491 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706741207.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:52 Heat of formation + Delta-G solvation = 114.894804 kcal Electronic energy + Delta-G solvation = -20449.967069 eV Core-core repulsion = 17351.558127 eV Total energy + Delta-G solvation = -3098.408942 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.00265 -38.91537 -36.48373 -35.75424 -32.78060 -31.96073 -31.10921 -30.11732 -28.50584 -25.35400 -24.13220 -22.00327 -21.68523 -21.10950 -20.41074 -19.31173 -18.06511 -16.96558 -16.24894 -15.85769 -14.86910 -14.73349 -14.66696 -14.15135 -13.94644 -13.65024 -13.33121 -12.99085 -12.52302 -12.01991 -11.53020 -11.52254 -11.42120 -11.03334 -10.86414 -10.78909 -10.62629 -10.24608 -10.17494 -10.09538 -9.77554 -9.59571 -8.73694 -8.36258 -7.99036 -7.30933 -7.02827 -6.11663 -3.84919 0.79872 2.01965 2.67751 2.81002 3.32344 3.39475 3.43312 3.93004 4.24533 4.46006 4.50777 4.73241 4.82634 4.99780 5.27298 5.33382 5.44735 5.63115 5.65627 5.74114 5.80699 5.94888 6.00512 6.18175 6.28547 6.43257 6.52868 6.72194 6.77839 6.87453 6.98627 7.08865 7.17757 7.21493 7.61163 7.77090 8.26371 9.02660 9.15052 9.63234 10.27877 10.95961 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.027143 B = 0.006053 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.317281 B = 4624.712338 C = 5414.813632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.278 1.278 6 H -0.273 1.273 7 C -0.350 4.350 8 H 0.082 0.918 9 N -0.410 5.410 10 C 0.505 3.495 11 O -0.526 6.526 12 C -0.050 4.050 13 C -0.098 4.098 14 C -0.072 4.072 15 C -0.196 4.196 16 C 0.065 3.935 17 N -0.434 5.434 18 H 0.439 0.561 19 N -0.309 5.309 20 C 0.106 3.894 21 C -0.101 4.101 22 C 0.070 3.930 23 C -0.175 4.175 24 C -0.210 4.210 25 H 0.266 0.734 26 H 0.130 0.870 27 H 0.122 0.878 28 H 0.183 0.817 29 H 0.147 0.853 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.137 -13.989 -3.408 14.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.138 4.138 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.477 4.477 8 H 0.100 0.900 9 N -0.129 5.129 10 C 0.294 3.706 11 O -0.404 6.404 12 C -0.058 4.058 13 C -0.118 4.118 14 C -0.092 4.092 15 C -0.206 4.206 16 C -0.091 4.091 17 N -0.135 5.135 18 H 0.282 0.718 19 N -0.139 5.139 20 C -0.047 4.047 21 C -0.124 4.124 22 C -0.036 4.036 23 C -0.213 4.213 24 C -0.249 4.249 25 H 0.076 0.924 26 H 0.148 0.852 27 H 0.140 0.860 28 H 0.200 0.800 29 H 0.164 0.836 30 H 0.129 0.871 31 H 0.126 0.874 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.484 -14.114 -3.404 14.730 hybrid contribution -0.369 0.642 -0.220 0.772 sum -2.853 -13.472 -3.624 14.240 Atomic orbital electron populations 1.69828 1.06722 1.27740 1.40950 1.25266 0.94781 0.99467 0.94268 0.86243 0.79337 0.81732 0.78540 1.21130 1.20332 1.19840 1.18875 0.95532 0.84095 1.49162 0.90020 1.42693 1.43739 1.06374 1.20051 1.17706 0.83810 0.87085 0.82044 1.90639 1.60353 1.31712 1.57729 1.20370 0.94525 0.93972 0.96939 1.20655 0.94697 0.98588 0.97836 1.20038 0.99063 0.89913 1.00201 1.19707 0.98075 0.93591 1.09204 1.22539 0.94519 0.90771 1.01235 1.46266 1.14391 1.10415 1.42444 0.71757 1.77718 1.10730 1.02620 1.22807 1.20893 0.93940 0.92161 0.97711 1.20878 1.01578 0.87789 1.02124 1.22013 0.93489 0.91274 0.96782 1.23144 1.04417 1.02588 0.91134 1.23384 0.98467 0.99228 1.03821 0.92364 0.85168 0.86035 0.79993 0.83593 0.87103 0.87436 0.89768 0.89498 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.27 11.67 55.50 0.65 -23.62 16 2 C 0.07 2.09 4.32 -17.45 -0.08 2.01 16 3 Si 0.91 21.85 29.60 -169.99 -5.03 16.82 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.35 -9.57 7.86 -15.01 -0.12 -9.68 16 8 H 0.08 2.14 7.37 -52.49 -0.39 1.75 16 9 N -0.41 -10.50 2.84 -108.91 -0.31 -10.81 16 10 C 0.51 13.35 6.77 -12.48 -0.08 13.27 16 11 O -0.53 -15.84 14.21 5.25 0.07 -15.77 16 12 C -0.05 -1.08 5.40 -105.07 -0.57 -1.65 16 13 C -0.10 -1.90 9.43 -39.59 -0.37 -2.27 16 14 C -0.07 -1.12 10.06 -39.47 -0.40 -1.52 16 15 C -0.20 -2.99 6.32 -105.13 -0.66 -3.65 16 16 C 0.07 0.70 12.07 -16.61 -0.20 0.50 16 17 N -0.43 -4.77 7.19 30.83 0.22 -4.54 16 18 H 0.44 2.87 8.96 -182.71 -1.64 1.23 16 19 N -0.31 -4.93 12.71 33.22 0.42 -4.51 16 20 C 0.11 1.87 7.47 -83.10 -0.62 1.25 16 21 C -0.10 -1.99 7.59 -38.64 -0.29 -2.28 16 22 C 0.07 1.48 4.25 -67.93 -0.29 1.19 16 23 C -0.18 -3.28 9.80 -26.73 -0.26 -3.54 16 24 C -0.21 -3.75 9.09 -26.73 -0.24 -3.99 16 25 H 0.27 7.51 8.32 -40.82 -0.34 7.17 16 26 H 0.13 2.61 7.89 -52.49 -0.41 2.20 16 27 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 28 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.15 2.83 4.66 -52.49 -0.24 2.59 16 30 H 0.11 2.25 6.10 -51.93 -0.32 1.93 16 31 H 0.11 2.18 6.80 -51.93 -0.35 1.83 16 32 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 LS Contribution 290.60 15.07 4.38 4.38 Total: -1.00 -35.00 290.60 -8.39 -43.38 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -4.60 Total: 5.04 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -4.19 Total: -10.37 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.98 Total: -43.48 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.07 Total: -15.77 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -35.00 -8.39 -43.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706741207.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.277 kcal (2) G-P(sol) polarization free energy of solvation -34.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds