Wall clock time and date at job start Mon Mar 30 2020 04:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31362 * 1 3 3 Si 1.86800 * 120.00377 * 2 1 4 4 H 1.48497 * 109.47124 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47335 * 120.00109 * 3 2 1 6 6 H 1.48507 * 109.46985 * 240.00033 * 3 2 1 7 7 C 1.39050 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00051 * 200.26723 * 7 2 1 9 9 N 1.36850 * 119.99905 * 20.27244 * 7 2 1 10 10 C 1.34777 * 120.00107 * 43.50979 * 9 7 2 11 11 O 1.21627 * 120.00123 * 355.67313 * 10 9 7 12 12 C 1.47520 * 119.99990 * 175.68079 * 10 9 7 13 13 C 1.41038 * 119.35262 * 148.07258 * 12 10 9 14 14 C 1.35223 * 121.57280 * 179.97438 * 13 12 10 15 15 C 1.41350 * 119.89280 * 0.02562 * 14 13 12 16 16 C 1.38091 * 134.48951 * 179.97438 * 15 14 13 17 17 N 1.34109 * 107.97579 * 180.02562 * 16 15 14 18 18 H 0.96996 * 125.03253 * 180.02562 * 17 16 15 19 19 N 1.39955 * 109.94767 * 359.97438 * 17 16 15 20 20 C 1.32234 * 108.88550 * 0.02562 * 19 17 16 21 21 C 1.38204 * 119.35378 * 327.79898 * 12 10 9 22 22 C 1.46500 * 120.00137 * 223.50662 * 9 7 2 23 23 C 1.53000 * 117.49830 * 6.37908 * 22 9 7 24 24 C 1.52996 * 59.99998 * 252.50961 * 23 22 9 25 25 H 0.97002 * 119.99985 * 354.94887 * 1 2 3 26 26 H 1.07995 * 119.21398 * 359.97438 * 13 12 10 27 27 H 1.08005 * 120.04862 * 180.02562 * 14 13 12 28 28 H 1.08002 * 126.01560 * 359.97438 * 16 15 14 29 29 H 1.07997 * 120.30148 * 359.97438 * 21 12 10 30 30 H 1.09000 * 115.55040 * 152.08778 * 22 9 7 31 31 H 1.09002 * 117.49557 * 359.97438 * 23 22 9 32 32 H 1.09003 * 117.49883 * 145.01801 * 23 22 9 33 33 H 1.09005 * 117.50224 * 252.50732 * 24 23 22 34 34 H 1.09008 * 117.51960 * 107.47784 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 1.2828 2.7464 -0.0006 5 1 3.1015 1.6963 1.2125 6 1 3.1015 1.6963 -1.2126 7 6 2.0088 -1.2042 0.0005 8 1 3.0386 -1.2331 0.3245 9 7 1.3881 -2.3528 -0.4096 10 6 0.6131 -2.3432 -1.5123 11 8 0.4017 -1.2984 -2.0979 12 6 0.0212 -3.5999 -2.0088 13 6 -1.2322 -3.5660 -2.6546 14 6 -1.8157 -4.6905 -3.1274 15 6 -1.1666 -5.9372 -2.9780 16 6 -1.4729 -7.2363 -3.3325 17 7 -0.4660 -8.0241 -2.9276 18 1 -0.4264 -8.9852 -3.0519 19 7 0.5200 -7.2542 -2.2999 20 6 0.1418 -5.9871 -2.3058 21 6 0.7084 -4.7867 -1.8371 22 6 1.5659 -3.5929 0.3499 23 6 2.3327 -3.5083 1.6712 24 6 2.9822 -4.1629 0.4503 25 1 -0.4850 0.8368 0.0740 26 1 -1.7380 -2.6194 -2.7743 27 1 -2.7761 -4.6360 -3.6184 28 1 -2.3665 -7.5609 -3.8449 29 1 1.6695 -4.7935 -1.3446 30 1 0.7407 -4.3027 0.2910 31 1 2.7052 -2.5300 1.9751 32 1 2.0119 -4.1624 2.4820 33 1 3.0888 -5.2477 0.4579 34 1 3.7816 -3.6154 -0.0491 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706741207.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:52 Heat of formation + Delta-G solvation = 90.150753 kcal Electronic energy + Delta-G solvation = -20451.040052 eV Core-core repulsion = 17351.558127 eV Total energy + Delta-G solvation = -3099.481925 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.16377 -40.66433 -38.01678 -37.42106 -34.77057 -33.30810 -32.81709 -31.57050 -29.73894 -27.23806 -25.60580 -23.49739 -23.12074 -22.73078 -21.72680 -20.93185 -19.32554 -18.41733 -17.99905 -17.35168 -16.69759 -16.42219 -15.85170 -15.67937 -15.59264 -15.02972 -14.84282 -14.70875 -14.10914 -13.67479 -13.23193 -13.03785 -12.83577 -12.76686 -12.71558 -12.46001 -12.26222 -12.09116 -11.68119 -11.38796 -11.19845 -11.11808 -10.76043 -10.05555 -9.59511 -9.02086 -8.54943 -8.20483 -5.98913 -0.42468 0.69538 1.37353 1.46660 1.49105 1.50712 1.92089 2.25488 2.39981 2.90568 3.04641 3.13588 3.28118 3.47587 3.75300 4.02556 4.09095 4.23770 4.29794 4.32295 4.43422 4.58141 4.67771 4.69237 4.84308 4.97230 5.13455 5.25344 5.41762 5.43704 5.47284 5.50438 5.71229 5.90182 6.19723 6.36257 6.62058 6.98555 7.16778 7.62684 8.30005 8.87553 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.027143 B = 0.006053 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.317281 B = 4624.712338 C = 5414.813632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.023 3.977 3 Si 0.975 3.025 4 H -0.285 1.285 5 H -0.253 1.253 6 H -0.281 1.281 7 C -0.365 4.365 8 H 0.086 0.914 9 N -0.425 5.425 10 C 0.492 3.508 11 O -0.582 6.582 12 C -0.073 4.073 13 C -0.151 4.151 14 C -0.026 4.026 15 C -0.232 4.232 16 C 0.126 3.874 17 N -0.409 5.409 18 H 0.462 0.538 19 N -0.339 5.339 20 C 0.083 3.917 21 C -0.099 4.099 22 C 0.042 3.958 23 C -0.167 4.167 24 C -0.181 4.181 25 H 0.262 0.738 26 H 0.105 0.895 27 H 0.165 0.835 28 H 0.250 0.750 29 H 0.139 0.861 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.933 -18.067 -4.150 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.185 4.185 3 Si 0.800 3.200 4 H -0.211 1.211 5 H -0.177 1.177 6 H -0.207 1.207 7 C -0.492 4.492 8 H 0.103 0.897 9 N -0.143 5.143 10 C 0.282 3.718 11 O -0.465 6.465 12 C -0.080 4.080 13 C -0.171 4.171 14 C -0.046 4.046 15 C -0.242 4.242 16 C -0.033 4.033 17 N -0.111 5.111 18 H 0.311 0.689 19 N -0.169 5.169 20 C -0.069 4.069 21 C -0.122 4.122 22 C -0.062 4.062 23 C -0.205 4.205 24 C -0.220 4.220 25 H 0.071 0.929 26 H 0.123 0.877 27 H 0.183 0.817 28 H 0.266 0.734 29 H 0.157 0.843 30 H 0.133 0.867 31 H 0.106 0.894 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.224 -18.264 -4.098 18.994 hybrid contribution -0.195 1.517 -0.114 1.534 sum -3.419 -16.747 -4.212 17.604 Atomic orbital electron populations 1.69955 1.08330 1.27973 1.43410 1.26151 0.95485 1.02851 0.93995 0.85304 0.78137 0.77698 0.78905 1.21098 1.17716 1.20713 1.19160 0.95929 0.85334 1.48803 0.89663 1.42866 1.43539 1.07457 1.20431 1.18548 0.83305 0.88232 0.81722 1.90560 1.62329 1.34157 1.59426 1.20024 0.96196 0.92627 0.99201 1.20480 0.95089 0.99384 1.02137 1.20362 0.99397 0.88621 0.96208 1.20063 0.97650 0.95429 1.11053 1.23475 0.94781 0.88313 0.96763 1.46405 1.13193 1.11633 1.39876 0.68903 1.77684 1.12618 1.02094 1.24512 1.20793 0.95363 0.92120 0.98618 1.20665 1.01113 0.88221 1.02158 1.22134 0.95525 0.90124 0.98458 1.23212 1.03335 1.02450 0.91494 1.23363 0.95661 1.00812 1.02120 0.92905 0.87682 0.81710 0.73434 0.84336 0.86695 0.89406 0.86574 0.86197 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -54.40 11.67 21.68 0.25 -54.14 16 2 C 0.02 1.33 4.32 84.96 0.37 1.70 16 3 Si 0.98 46.90 29.60 68.60 2.03 48.93 16 4 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 5 H -0.25 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 7 C -0.37 -21.01 7.86 84.11 0.66 -20.35 16 8 H 0.09 4.66 7.37 -2.91 -0.02 4.64 16 9 N -0.42 -23.06 2.84 -616.73 -1.75 -24.81 16 10 C 0.49 27.98 6.77 86.69 0.59 28.57 16 11 O -0.58 -38.06 14.21 -4.12 -0.06 -38.12 16 12 C -0.07 -3.36 5.40 -20.15 -0.11 -3.47 16 13 C -0.15 -6.12 9.43 22.26 0.21 -5.91 16 14 C -0.03 -0.75 10.06 22.34 0.22 -0.53 16 15 C -0.23 -6.18 6.32 -20.20 -0.13 -6.31 16 16 C 0.13 1.81 12.07 84.31 1.02 2.82 16 17 N -0.41 -6.59 7.19 -56.37 -0.41 -7.00 16 18 H 0.46 3.06 8.96 -213.42 -1.91 1.15 16 19 N -0.34 -9.71 12.71 -48.82 -0.62 -10.33 16 20 C 0.08 2.78 7.47 42.06 0.31 3.09 16 21 C -0.10 -3.98 7.59 22.88 0.17 -3.80 16 22 C 0.04 1.83 4.25 44.99 0.19 2.03 16 23 C -0.17 -6.22 9.80 30.59 0.30 -5.92 16 24 C -0.18 -6.37 9.09 30.59 0.28 -6.09 16 25 H 0.26 15.78 8.32 -92.71 -0.77 15.01 16 26 H 0.11 4.64 7.89 -2.91 -0.02 4.62 16 27 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 28 H 0.25 0.35 8.06 -2.91 -0.02 0.32 16 29 H 0.14 5.53 4.66 -2.91 -0.01 5.51 16 30 H 0.12 4.81 6.10 -2.39 -0.01 4.80 16 31 H 0.09 3.63 6.80 -2.39 -0.02 3.62 16 32 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 33 H 0.12 3.43 8.14 -2.38 -0.02 3.41 16 34 H 0.08 3.09 8.14 -2.38 -0.02 3.07 16 Total: -1.00 -85.72 290.60 2.78 -82.94 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -0.76 Total: 16.70 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 4.09 Total: -14.17 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -2.52 Total: -96.28 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -0.06 Total: -38.12 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -85.72 2.78 -82.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706741207.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.093 kcal (2) G-P(sol) polarization free energy of solvation -85.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds