Wall clock time and date at job start Mon Mar 30 2020 04:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20753 * 120.00095 * 2 1 4 4 C 1.50703 * 119.99805 * 180.02562 * 2 1 3 5 5 C 1.53035 * 109.45970 * 154.99811 * 4 2 1 6 6 C 1.53191 * 109.31327 * 181.38844 * 5 4 2 7 7 N 1.46926 * 108.89109 * 305.29292 * 6 5 4 8 8 C 1.34778 * 120.63336 * 233.68039 * 7 6 5 9 9 O 1.21286 * 119.99664 * 0.02562 * 8 7 6 10 10 C 1.50696 * 120.00030 * 180.02562 * 8 7 6 11 11 S 1.81004 * 109.46759 * 179.97438 * 10 8 7 12 12 C 1.76205 * 99.99750 * 180.02562 * 11 10 8 13 13 H 1.08001 * 120.00271 * 359.97438 * 12 11 10 14 14 C 1.38796 * 120.00062 * 180.02562 * 12 11 10 15 15 N 1.31632 * 119.99678 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00241 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46936 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46917 * 119.99827 * 16 14 12 19 19 H 1.48494 * 109.47415 * 239.99817 * 16 14 12 20 20 C 1.47207 * 118.55531 * 53.54119 * 7 6 5 21 21 C 1.53038 * 109.45937 * 275.07018 * 4 2 1 22 22 H 1.09000 * 109.46879 * 270.00604 * 1 2 3 23 23 H 1.09002 * 109.47128 * 29.99301 * 1 2 3 24 24 H 1.08998 * 109.47820 * 149.99982 * 1 2 3 25 25 H 1.09004 * 109.44373 * 35.03643 * 4 2 1 26 26 H 1.09003 * 109.49576 * 61.43512 * 5 4 2 27 27 H 1.09000 * 109.52700 * 301.35561 * 5 4 2 28 28 H 1.09002 * 109.58786 * 65.15336 * 6 5 4 29 29 H 1.08996 * 109.58870 * 185.43616 * 6 5 4 30 30 H 1.08992 * 109.47349 * 300.00085 * 10 8 7 31 31 H 1.09000 * 109.46730 * 60.00487 * 10 8 7 32 32 H 0.97001 * 119.99749 * 179.97438 * 15 14 12 33 33 H 1.08996 * 109.53610 * 186.67231 * 20 7 6 34 34 H 1.09002 * 109.68003 * 66.36699 * 20 7 6 35 35 H 1.09002 * 109.49557 * 298.56319 * 21 4 2 36 36 H 1.08996 * 109.50003 * 58.66216 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3052 -0.0006 5 6 3.6479 -1.0926 -0.6103 6 6 4.3978 -2.4280 -0.6411 7 7 4.4179 -2.9937 0.7148 8 6 5.5816 -3.3540 1.2914 9 8 6.6255 -3.2121 0.6906 10 6 5.5855 -3.9333 2.6826 11 16 7.2858 -4.3140 3.1727 12 6 7.0017 -4.9576 4.7882 13 1 5.9959 -5.0149 5.1775 14 6 8.0706 -5.3899 5.5609 15 7 9.2965 -5.3195 5.0866 16 14 7.7695 -6.0714 7.2739 17 1 6.3144 -6.0440 7.5688 18 1 8.2619 -7.4708 7.3434 19 1 8.4928 -5.2421 8.2709 20 6 3.1408 -3.1547 1.4290 21 6 2.4049 -1.8111 1.4365 22 1 -0.3633 0.0001 1.0277 23 1 -0.3633 0.8901 -0.5137 24 1 -0.3635 -0.8899 -0.5138 25 1 1.7130 -2.0399 -0.5910 26 1 4.2049 -0.3763 -0.0063 27 1 3.5449 -0.7098 -1.6257 28 1 3.8905 -3.1166 -1.3168 29 1 5.4195 -2.2656 -0.9844 30 1 5.1596 -3.2105 3.3784 31 1 4.9904 -4.8464 2.6976 32 1 10.0435 -5.6213 5.6268 33 1 3.3338 -3.4713 2.4539 34 1 2.5298 -3.9031 0.9243 35 1 2.9737 -1.0881 2.0213 36 1 1.4167 -1.9400 1.8779 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707727613.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:37 Heat of formation + Delta-G solvation = -83.425448 kcal Electronic energy + Delta-G solvation = -18442.313748 eV Core-core repulsion = 15438.456194 eV Total energy + Delta-G solvation = -3003.857554 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.47676 -39.26827 -36.89621 -33.19490 -32.43189 -31.72848 -30.30278 -29.02624 -25.79470 -25.38765 -23.39002 -21.70110 -19.83596 -19.03301 -17.72409 -16.84093 -16.12547 -15.68768 -15.38551 -15.27308 -15.19819 -14.80915 -14.20074 -14.01175 -13.80025 -13.31989 -12.99889 -12.79912 -12.66766 -12.51121 -12.34020 -12.08705 -11.82051 -11.44867 -11.07554 -11.03929 -10.99637 -10.87394 -10.74824 -9.80238 -9.79758 -9.35708 -9.07811 -8.55127 -8.22245 -6.50422 -6.22010 -3.92643 1.65137 2.91660 3.04394 3.21241 3.25592 3.30692 3.58121 3.70228 4.19521 4.34800 4.45404 4.65438 4.81366 4.84903 4.99353 5.02023 5.10236 5.13224 5.15051 5.26041 5.38893 5.44116 5.49857 5.59469 5.62918 5.66054 5.81882 5.86275 5.95099 6.09342 6.10624 6.61986 7.21461 7.53991 7.59448 8.34852 8.55526 9.23316 10.85477 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.032866 B = 0.003800 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.727723 B = 7366.806195 C = 7868.955873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.358 3.642 3 O -0.454 6.454 4 C -0.137 4.137 5 C -0.122 4.122 6 C 0.114 3.886 7 N -0.622 5.622 8 C 0.535 3.465 9 O -0.516 6.516 10 C -0.151 4.151 11 S -0.062 6.062 12 C -0.535 4.535 13 H 0.073 0.927 14 C 0.073 3.927 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.111 3.889 21 C -0.123 4.123 22 H 0.096 0.904 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.268 0.732 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.041 6.030 -9.708 23.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.233 3.767 3 O -0.327 6.327 4 C -0.156 4.156 5 C -0.161 4.161 6 C -0.009 4.009 7 N -0.359 5.359 8 C 0.323 3.677 9 O -0.390 6.390 10 C -0.301 4.301 11 S 0.165 5.835 12 C -0.683 4.683 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.502 5.502 16 Si 0.745 3.255 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.012 4.012 21 C -0.161 4.161 22 H 0.114 0.886 23 H 0.102 0.898 24 H 0.104 0.896 25 H 0.117 0.883 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.955 6.760 -10.570 21.904 hybrid contribution -1.617 -0.673 1.811 2.519 sum -19.572 6.087 -8.758 22.289 Atomic orbital electron populations 1.22318 0.94452 1.04710 1.04717 1.24675 0.91873 0.90128 0.70010 1.90423 1.72049 1.35108 1.35105 1.21800 0.97791 0.96966 0.99057 1.21837 0.94334 0.98287 1.01613 1.21497 1.02543 0.93288 0.83581 1.48181 1.06533 1.64730 1.16410 1.20336 0.82632 0.76953 0.87731 1.90694 1.30856 1.53106 1.64340 1.23552 1.08335 1.03048 0.95181 1.85433 0.98182 1.81512 1.18373 1.22897 0.96080 1.48337 1.00972 0.90895 1.24998 0.94435 0.95307 0.98875 1.70031 0.98476 1.44480 1.37251 0.86114 0.78426 0.78602 0.82329 1.19618 1.20567 1.20564 1.21718 0.84717 0.96146 0.98654 1.21851 1.01519 0.98242 0.94505 0.88590 0.89798 0.89622 0.88321 0.90414 0.90691 0.91763 0.88575 0.89282 0.89243 0.92231 0.88783 0.91115 0.90653 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.04 10.25 36.01 0.37 -0.67 16 2 C 0.36 3.10 6.38 -29.03 -0.19 2.91 16 3 O -0.45 -5.88 16.87 6.00 0.10 -5.78 16 4 C -0.14 -1.09 2.41 -91.73 -0.22 -1.31 16 5 C -0.12 -1.27 4.87 -26.61 -0.13 -1.40 16 6 C 0.11 1.36 6.42 -3.71 -0.02 1.34 16 7 N -0.62 -8.67 2.98 -172.54 -0.51 -9.19 16 8 C 0.54 10.22 7.72 -10.99 -0.08 10.14 16 9 O -0.52 -11.92 15.27 5.55 0.08 -11.83 16 10 C -0.15 -3.04 4.51 36.00 0.16 -2.88 16 11 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 12 C -0.53 -15.18 9.50 30.94 0.29 -14.89 16 13 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 14 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 15 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 16 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 C 0.11 1.11 6.35 -3.56 -0.02 1.08 16 21 C -0.12 -1.02 5.34 -26.61 -0.14 -1.16 16 22 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.08 0.25 8.08 -51.93 -0.42 -0.17 16 25 H 0.10 0.55 8.10 -51.93 -0.42 0.13 16 26 H 0.08 1.01 7.92 -51.93 -0.41 0.60 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.10 1.36 7.00 -51.93 -0.36 1.00 16 30 H 0.09 1.67 7.69 -51.92 -0.40 1.27 16 31 H 0.09 1.65 7.96 -51.92 -0.41 1.24 16 32 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.09 0.97 5.97 -51.93 -0.31 0.66 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 314.87 15.07 4.75 4.75 Total: -1.00 -35.80 314.87 -7.41 -43.20 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -5.24 Total: -3.26 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -0.08 Total: -4.85 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.22 Total: -34.63 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.19 Total: -17.61 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.80 -7.41 -43.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707727613.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.223 kcal (2) G-P(sol) polarization free energy of solvation -35.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds