Wall clock time and date at job start Mon Mar 30 2020 04:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20753 * 120.00095 * 2 1 4 4 C 1.50703 * 119.99805 * 180.02562 * 2 1 3 5 5 C 1.53035 * 109.45970 * 154.99811 * 4 2 1 6 6 C 1.53191 * 109.31327 * 181.38844 * 5 4 2 7 7 N 1.46926 * 108.89109 * 305.29292 * 6 5 4 8 8 C 1.34778 * 120.63336 * 233.68039 * 7 6 5 9 9 O 1.21286 * 119.99664 * 0.02562 * 8 7 6 10 10 C 1.50696 * 120.00030 * 180.02562 * 8 7 6 11 11 S 1.81004 * 109.46759 * 179.97438 * 10 8 7 12 12 C 1.76205 * 99.99750 * 180.02562 * 11 10 8 13 13 H 1.08001 * 120.00271 * 359.97438 * 12 11 10 14 14 C 1.38796 * 120.00062 * 180.02562 * 12 11 10 15 15 N 1.31632 * 119.99678 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00241 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46936 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46917 * 119.99827 * 16 14 12 19 19 H 1.48494 * 109.47415 * 239.99817 * 16 14 12 20 20 C 1.47207 * 118.55531 * 53.54119 * 7 6 5 21 21 C 1.53038 * 109.45937 * 275.07018 * 4 2 1 22 22 H 1.09000 * 109.46879 * 270.00604 * 1 2 3 23 23 H 1.09002 * 109.47128 * 29.99301 * 1 2 3 24 24 H 1.08998 * 109.47820 * 149.99982 * 1 2 3 25 25 H 1.09004 * 109.44373 * 35.03643 * 4 2 1 26 26 H 1.09003 * 109.49576 * 61.43512 * 5 4 2 27 27 H 1.09000 * 109.52700 * 301.35561 * 5 4 2 28 28 H 1.09002 * 109.58786 * 65.15336 * 6 5 4 29 29 H 1.08996 * 109.58870 * 185.43616 * 6 5 4 30 30 H 1.08992 * 109.47349 * 300.00085 * 10 8 7 31 31 H 1.09000 * 109.46730 * 60.00487 * 10 8 7 32 32 H 0.97001 * 119.99749 * 179.97438 * 15 14 12 33 33 H 1.08996 * 109.53610 * 186.67231 * 20 7 6 34 34 H 1.09002 * 109.68003 * 66.36699 * 20 7 6 35 35 H 1.09002 * 109.49557 * 298.56319 * 21 4 2 36 36 H 1.08996 * 109.50003 * 58.66216 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3052 -0.0006 5 6 3.6479 -1.0926 -0.6103 6 6 4.3978 -2.4280 -0.6411 7 7 4.4179 -2.9937 0.7148 8 6 5.5816 -3.3540 1.2914 9 8 6.6255 -3.2121 0.6906 10 6 5.5855 -3.9333 2.6826 11 16 7.2858 -4.3140 3.1727 12 6 7.0017 -4.9576 4.7882 13 1 5.9959 -5.0149 5.1775 14 6 8.0706 -5.3899 5.5609 15 7 9.2965 -5.3195 5.0866 16 14 7.7695 -6.0714 7.2739 17 1 6.3144 -6.0440 7.5688 18 1 8.2619 -7.4708 7.3434 19 1 8.4928 -5.2421 8.2709 20 6 3.1408 -3.1547 1.4290 21 6 2.4049 -1.8111 1.4365 22 1 -0.3633 0.0001 1.0277 23 1 -0.3633 0.8901 -0.5137 24 1 -0.3635 -0.8899 -0.5138 25 1 1.7130 -2.0399 -0.5910 26 1 4.2049 -0.3763 -0.0063 27 1 3.5449 -0.7098 -1.6257 28 1 3.8905 -3.1166 -1.3168 29 1 5.4195 -2.2656 -0.9844 30 1 5.1596 -3.2105 3.3784 31 1 4.9904 -4.8464 2.6976 32 1 10.0435 -5.6213 5.6268 33 1 3.3338 -3.4713 2.4539 34 1 2.5298 -3.9031 0.9243 35 1 2.9737 -1.0881 2.0213 36 1 1.4167 -1.9400 1.8779 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707727613.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:36 Heat of formation + Delta-G solvation = -108.020229 kcal Electronic energy + Delta-G solvation = -18443.380258 eV Core-core repulsion = 15438.456194 eV Total energy + Delta-G solvation = -3004.924063 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.43217 -40.37278 -38.03956 -34.58932 -34.25412 -32.65377 -30.90828 -30.42166 -27.70615 -26.56999 -24.25496 -22.67795 -20.73277 -20.18086 -19.49730 -18.20107 -17.01859 -16.89578 -16.85021 -16.63490 -16.08591 -15.98841 -15.74520 -15.07491 -14.89701 -14.49177 -14.25272 -14.18334 -13.45149 -13.36172 -13.30786 -13.15695 -12.96021 -12.91430 -12.77718 -12.58055 -12.27615 -11.78934 -11.71150 -11.62709 -11.15995 -10.89848 -10.51586 -10.25693 -9.68508 -8.68319 -8.34717 -6.13577 1.00642 1.25671 1.42121 1.46335 1.56044 1.58097 2.10344 2.27302 2.99648 3.08079 3.25106 3.58068 3.72843 3.81989 4.04612 4.07119 4.25369 4.29750 4.33822 4.43774 4.48636 4.61107 4.68144 4.70169 4.80061 4.81823 4.85312 4.98803 5.06704 5.27380 5.29164 5.41862 5.56378 6.19876 6.28056 6.60249 7.06440 7.13511 8.74901 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.032866 B = 0.003800 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.727723 B = 7366.806195 C = 7868.955873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.361 3.639 3 O -0.509 6.509 4 C -0.134 4.134 5 C -0.118 4.118 6 C 0.113 3.887 7 N -0.610 5.610 8 C 0.530 3.470 9 O -0.570 6.570 10 C -0.122 4.122 11 S -0.158 6.158 12 C -0.543 4.543 13 H 0.085 0.915 14 C 0.012 3.988 15 N -0.913 5.913 16 Si 1.001 2.999 17 H -0.254 1.254 18 H -0.274 1.274 19 H -0.275 1.275 20 C 0.101 3.899 21 C -0.118 4.118 22 H 0.112 0.888 23 H 0.079 0.921 24 H 0.117 0.883 25 H 0.141 0.859 26 H 0.039 0.961 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.271 0.729 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.045 0.955 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.222 4.967 -9.194 26.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.240 3.760 3 O -0.386 6.386 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.010 4.010 7 N -0.344 5.344 8 C 0.318 3.682 9 O -0.449 6.449 10 C -0.273 4.273 11 S 0.069 5.931 12 C -0.691 4.691 13 H 0.103 0.897 14 C -0.193 4.193 15 N -0.549 5.549 16 Si 0.823 3.177 17 H -0.178 1.178 18 H -0.199 1.199 19 H -0.201 1.201 20 C -0.020 4.020 21 C -0.156 4.156 22 H 0.130 0.870 23 H 0.098 0.902 24 H 0.135 0.865 25 H 0.159 0.841 26 H 0.058 0.942 27 H 0.105 0.895 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.128 0.872 35 H 0.064 0.936 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.218 5.699 -10.070 25.051 hybrid contribution -0.428 -0.286 1.540 1.624 sum -22.646 5.412 -8.530 24.797 Atomic orbital electron populations 1.22343 0.91052 1.06119 1.06061 1.25261 0.93683 0.89292 0.67766 1.90429 1.73412 1.36896 1.37871 1.21888 0.96274 0.97898 0.99266 1.21748 0.95606 0.96256 1.01981 1.21651 1.01582 0.94873 0.82851 1.48232 1.06463 1.62610 1.17096 1.20192 0.83529 0.77228 0.87268 1.90675 1.33154 1.55759 1.65337 1.23359 1.03040 1.04549 0.96333 1.85657 1.05630 1.82169 1.19657 1.23226 0.96791 1.48229 1.00868 0.89716 1.26166 0.93954 0.95402 1.03766 1.70203 0.99705 1.45725 1.39278 0.84874 0.79190 0.77713 0.75968 1.17755 1.19901 1.20084 1.22135 0.83056 0.98232 0.98597 1.21840 1.02898 0.96312 0.94532 0.87020 0.90211 0.86452 0.84138 0.94180 0.89483 0.88207 0.91760 0.87670 0.86936 0.92023 0.89068 0.87221 0.93583 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.19 10.25 71.24 0.73 -0.46 16 2 C 0.36 5.33 6.38 29.10 0.19 5.52 16 3 O -0.51 -13.07 16.87 -1.43 -0.02 -13.09 16 4 C -0.13 -1.67 2.41 -11.51 -0.03 -1.70 16 5 C -0.12 -2.33 4.87 30.67 0.15 -2.18 16 6 C 0.11 2.57 6.42 86.36 0.55 3.12 16 7 N -0.61 -16.16 2.98 -818.19 -2.44 -18.61 16 8 C 0.53 20.48 7.72 87.66 0.68 21.16 16 9 O -0.57 -27.72 15.27 -3.05 -0.05 -27.76 16 10 C -0.12 -4.90 4.51 71.23 0.32 -4.58 16 11 S -0.16 -8.95 20.57 -56.49 -1.16 -10.11 16 12 C -0.54 -31.07 9.50 67.95 0.65 -30.43 16 13 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 14 C 0.01 0.66 5.49 84.86 0.47 1.13 16 15 N -0.91 -56.50 13.22 21.65 0.29 -56.21 16 16 Si 1.00 43.48 29.55 68.60 2.03 45.50 16 17 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 20 C 0.10 1.64 6.35 86.31 0.55 2.19 16 21 C -0.12 -1.53 5.34 30.67 0.16 -1.37 16 22 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 23 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.12 -0.01 8.08 -2.39 -0.02 -0.03 16 25 H 0.14 0.68 8.10 -2.39 -0.02 0.66 16 26 H 0.04 1.09 7.92 -2.39 -0.02 1.07 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 1.90 7.00 -2.39 -0.02 1.89 16 30 H 0.11 3.86 7.69 -2.40 -0.02 3.84 16 31 H 0.11 3.98 7.96 -2.40 -0.02 3.96 16 32 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 33 H 0.09 1.57 5.97 -2.39 -0.01 1.56 16 34 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -84.51 314.87 4.12 -80.39 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.07 Total: 7.47 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 4.41 Total: -7.59 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -2.16 Total: -74.82 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -0.07 Total: -40.85 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.16 Total: -10.11 kcal Total: -84.51 4.12 -80.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707727613.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.627 kcal (2) G-P(sol) polarization free energy of solvation -84.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds