Wall clock time and date at job start Mon Mar 30 2020 04:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20765 * 120.00298 * 2 1 4 4 C 1.50706 * 119.99981 * 179.97438 * 2 1 3 5 5 H 1.08997 * 109.52206 * 329.92000 * 4 2 1 6 6 C 1.53044 * 109.49748 * 209.84121 * 4 2 1 7 7 C 1.53040 * 109.53662 * 178.68317 * 6 4 2 8 8 C 1.53197 * 109.31110 * 61.36306 * 7 6 4 9 9 N 1.46957 * 108.89063 * 305.44560 * 8 7 6 10 10 C 1.34780 * 120.64915 * 233.53185 * 9 8 7 11 11 O 1.21288 * 119.99578 * 179.81962 * 10 9 8 12 12 C 1.50697 * 120.00489 * 359.81927 * 10 9 8 13 13 S 1.80992 * 109.47185 * 180.02562 * 12 10 9 14 14 C 1.76198 * 99.99978 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99810 * 359.97438 * 14 13 12 16 16 C 1.38806 * 119.99972 * 180.02562 * 14 13 12 17 17 N 1.31633 * 119.99608 * 180.02562 * 16 14 13 18 18 Si 1.86790 * 120.00058 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47219 * 90.00377 * 18 16 14 20 20 H 1.48500 * 109.47162 * 210.00251 * 18 16 14 21 21 H 1.48502 * 109.47324 * 330.00347 * 18 16 14 22 22 C 1.46926 * 118.71783 * 53.35357 * 9 8 7 23 23 H 1.09000 * 109.47379 * 240.00619 * 1 2 3 24 24 H 1.09006 * 109.47207 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47266 * 120.00132 * 1 2 3 26 26 H 1.08994 * 109.45986 * 298.70120 * 6 4 2 27 27 H 1.09001 * 109.45959 * 58.67449 * 6 4 2 28 28 H 1.08995 * 109.49643 * 181.31582 * 7 6 4 29 29 H 1.08996 * 109.49892 * 301.41776 * 7 6 4 30 30 H 1.09001 * 109.58145 * 65.15551 * 8 7 6 31 31 H 1.08997 * 109.58684 * 185.43073 * 8 7 6 32 32 H 1.09004 * 109.46922 * 300.00225 * 12 10 9 33 33 H 1.08997 * 109.46776 * 60.00082 * 12 10 9 34 34 H 0.96997 * 119.99659 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.58861 * 186.78362 * 22 9 8 36 36 H 1.08996 * 109.58519 * 66.50253 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3052 0.0006 5 1 1.6727 -2.0648 0.5158 6 6 3.5996 -1.1215 0.7184 7 6 4.3512 -2.4543 0.7483 8 6 4.6306 -2.9107 -0.6872 9 7 3.3628 -2.9492 -1.4294 10 6 2.9822 -4.0655 -2.0818 11 8 1.9319 -4.0852 -2.6880 12 6 3.8616 -5.2890 -2.0582 13 16 3.0826 -6.6106 -3.0187 14 6 4.2893 -7.8801 -2.8272 15 1 5.1811 -7.6944 -2.2469 16 6 4.0944 -9.1185 -3.4230 17 7 4.9957 -10.0671 -3.2795 18 14 2.5524 -9.4395 -4.4272 19 1 2.7999 -9.0738 -5.8451 20 1 2.1969 -10.8787 -4.3421 21 1 1.4344 -8.6210 -3.8929 22 6 2.5161 -1.7485 -1.4433 23 1 -0.3634 -0.5137 0.8900 24 1 -0.3634 1.0277 -0.0005 25 1 -0.3634 -0.5139 -0.8900 26 1 4.1969 -0.3796 0.1884 27 1 3.4211 -0.7824 1.7388 28 1 5.2943 -2.3282 1.2800 29 1 3.7438 -3.2032 1.2564 30 1 5.3117 -2.2085 -1.1678 31 1 5.0792 -3.9040 -0.6740 32 1 4.8316 -5.0477 -2.4929 33 1 3.9970 -5.6192 -1.0283 34 1 4.8593 -10.9326 -3.6956 35 1 1.5673 -1.9760 -1.9292 36 1 3.0226 -0.9506 -1.9863 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707755419.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:47 Heat of formation + Delta-G solvation = -83.664474 kcal Electronic energy + Delta-G solvation = -18560.909021 eV Core-core repulsion = 15557.041102 eV Total energy + Delta-G solvation = -3003.867919 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.58408 -39.31191 -37.03077 -33.22696 -32.46091 -32.02705 -30.25530 -29.07667 -25.69963 -25.26955 -24.12029 -21.64410 -19.64226 -19.20472 -17.73518 -16.94684 -16.15766 -16.02648 -15.55316 -15.23338 -15.00440 -14.92893 -14.37773 -13.90647 -13.81521 -13.42781 -13.28951 -12.99655 -12.80874 -12.57851 -12.36428 -12.09652 -11.73706 -11.34870 -11.22615 -11.20738 -11.02868 -10.89292 -10.61273 -9.95696 -9.86045 -9.50078 -9.02642 -8.69142 -8.52185 -6.95013 -6.31192 -4.03297 1.60346 2.65193 2.85809 3.12642 3.31473 3.48337 3.54307 3.75624 4.30411 4.34782 4.47489 4.63695 4.64678 4.77903 4.85138 5.00861 5.04984 5.07994 5.12343 5.16931 5.26288 5.37511 5.54122 5.56185 5.61136 5.67217 5.70204 5.74909 5.79294 5.95385 6.04199 6.43363 7.18164 7.37735 7.91836 8.35342 8.39163 9.14982 10.78056 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.037013 B = 0.004067 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.312170 B = 6882.558500 C = 7434.615583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.365 3.635 3 O -0.456 6.456 4 C -0.155 4.155 5 H 0.102 0.898 6 C -0.107 4.107 7 C -0.135 4.135 8 C 0.104 3.896 9 N -0.616 5.616 10 C 0.535 3.465 11 O -0.518 6.518 12 C -0.121 4.121 13 S -0.142 6.142 14 C -0.522 4.522 15 H 0.088 0.912 16 C 0.096 3.904 17 N -0.880 5.880 18 Si 0.857 3.143 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.235 1.235 22 C 0.129 3.871 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.271 0.729 35 H 0.098 0.902 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 18.139 8.992 20.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.240 3.760 3 O -0.329 6.329 4 C -0.175 4.175 5 H 0.120 0.880 6 C -0.144 4.144 7 C -0.173 4.173 8 C -0.019 4.019 9 N -0.352 5.352 10 C 0.323 3.677 11 O -0.393 6.393 12 C -0.272 4.272 13 S 0.084 5.916 14 C -0.669 4.669 15 H 0.106 0.894 16 C -0.113 4.113 17 N -0.517 5.517 18 Si 0.681 3.319 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.159 1.159 22 C 0.006 3.994 23 H 0.112 0.888 24 H 0.100 0.900 25 H 0.115 0.885 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.439 18.463 8.039 20.859 hybrid contribution 0.747 -0.489 0.363 0.964 sum -4.692 17.975 8.402 20.389 Atomic orbital electron populations 1.22366 0.94088 1.04963 1.04978 1.24533 0.92042 0.89631 0.69822 1.90403 1.72152 1.34962 1.35343 1.22188 0.98545 0.97495 0.99266 0.88020 1.21427 0.94591 0.97906 1.00502 1.21929 1.01319 0.97273 0.96779 1.21805 0.85309 1.03326 0.91452 1.48032 1.21887 1.12482 1.52818 1.20338 0.86391 0.83275 0.77674 1.90688 1.23943 1.82640 1.42022 1.23309 1.02116 0.96300 1.05457 1.84791 1.31883 1.07415 1.67520 1.22305 1.07412 0.98104 1.39095 0.89380 1.24710 0.96655 0.94749 0.95145 1.69938 1.34306 1.04249 1.43169 0.86737 0.84526 0.78937 0.81661 1.19189 1.19924 1.15930 1.21268 0.97221 0.87379 0.93572 0.88819 0.89985 0.88488 0.90719 0.91498 0.90124 0.91040 0.91181 0.88818 0.88458 0.88401 0.91915 0.88326 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.35 10.24 36.00 0.37 -0.98 16 2 C 0.36 3.35 6.33 -29.04 -0.18 3.17 16 3 O -0.46 -5.61 16.93 5.99 0.10 -5.50 16 4 C -0.15 -1.41 2.61 -91.65 -0.24 -1.65 16 5 H 0.10 0.87 8.12 -51.93 -0.42 0.45 16 6 C -0.11 -0.92 4.74 -26.69 -0.13 -1.05 16 7 C -0.13 -1.12 6.08 -26.61 -0.16 -1.29 16 8 C 0.10 1.06 6.33 -3.69 -0.02 1.03 16 9 N -0.62 -8.04 2.98 -172.74 -0.51 -8.56 16 10 C 0.54 9.35 7.72 -10.99 -0.08 9.27 16 11 O -0.52 -10.82 15.28 5.55 0.08 -10.73 16 12 C -0.12 -2.30 4.50 36.00 0.16 -2.14 16 13 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 14 C -0.52 -14.81 10.04 30.94 0.31 -14.50 16 15 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 16 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 17 N -0.88 -26.30 13.97 55.49 0.78 -25.52 16 18 Si 0.86 21.53 27.74 -169.99 -4.71 16.82 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 22 C 0.13 1.45 5.69 -3.71 -0.02 1.43 16 23 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.70 7.90 -51.93 -0.41 0.29 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.96 5.95 -51.93 -0.31 0.65 16 32 H 0.10 1.72 7.95 -51.91 -0.41 1.31 16 33 H 0.10 1.71 7.69 -51.92 -0.40 1.31 16 34 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.10 1.20 7.01 -51.93 -0.36 0.84 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 312.26 15.07 4.71 4.71 Total: -1.00 -33.91 312.26 -6.93 -40.84 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -5.27 Total: -2.48 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -0.10 Total: -4.02 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.26 Total: -34.08 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.19 Total: -16.24 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.71 Total: 16.82 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.91 -6.93 -40.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707755419.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.826 kcal (2) G-P(sol) polarization free energy of solvation -33.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds