Wall clock time and date at job start Mon Mar 30 2020 04:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20765 * 120.00298 * 2 1 4 4 C 1.50706 * 119.99981 * 179.97438 * 2 1 3 5 5 H 1.08997 * 109.52206 * 329.92000 * 4 2 1 6 6 C 1.53044 * 109.49748 * 209.84121 * 4 2 1 7 7 C 1.53040 * 109.53662 * 178.68317 * 6 4 2 8 8 C 1.53197 * 109.31110 * 61.36306 * 7 6 4 9 9 N 1.46957 * 108.89063 * 305.44560 * 8 7 6 10 10 C 1.34780 * 120.64915 * 233.53185 * 9 8 7 11 11 O 1.21288 * 119.99578 * 179.81962 * 10 9 8 12 12 C 1.50697 * 120.00489 * 359.81927 * 10 9 8 13 13 S 1.80992 * 109.47185 * 180.02562 * 12 10 9 14 14 C 1.76198 * 99.99978 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99810 * 359.97438 * 14 13 12 16 16 C 1.38806 * 119.99972 * 180.02562 * 14 13 12 17 17 N 1.31633 * 119.99608 * 180.02562 * 16 14 13 18 18 Si 1.86790 * 120.00058 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47219 * 90.00377 * 18 16 14 20 20 H 1.48500 * 109.47162 * 210.00251 * 18 16 14 21 21 H 1.48502 * 109.47324 * 330.00347 * 18 16 14 22 22 C 1.46926 * 118.71783 * 53.35357 * 9 8 7 23 23 H 1.09000 * 109.47379 * 240.00619 * 1 2 3 24 24 H 1.09006 * 109.47207 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47266 * 120.00132 * 1 2 3 26 26 H 1.08994 * 109.45986 * 298.70120 * 6 4 2 27 27 H 1.09001 * 109.45959 * 58.67449 * 6 4 2 28 28 H 1.08995 * 109.49643 * 181.31582 * 7 6 4 29 29 H 1.08996 * 109.49892 * 301.41776 * 7 6 4 30 30 H 1.09001 * 109.58145 * 65.15551 * 8 7 6 31 31 H 1.08997 * 109.58684 * 185.43073 * 8 7 6 32 32 H 1.09004 * 109.46922 * 300.00225 * 12 10 9 33 33 H 1.08997 * 109.46776 * 60.00082 * 12 10 9 34 34 H 0.96997 * 119.99659 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.58861 * 186.78362 * 22 9 8 36 36 H 1.08996 * 109.58519 * 66.50253 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3052 0.0006 5 1 1.6727 -2.0648 0.5158 6 6 3.5996 -1.1215 0.7184 7 6 4.3512 -2.4543 0.7483 8 6 4.6306 -2.9107 -0.6872 9 7 3.3628 -2.9492 -1.4294 10 6 2.9822 -4.0655 -2.0818 11 8 1.9319 -4.0852 -2.6880 12 6 3.8616 -5.2890 -2.0582 13 16 3.0826 -6.6106 -3.0187 14 6 4.2893 -7.8801 -2.8272 15 1 5.1811 -7.6944 -2.2469 16 6 4.0944 -9.1185 -3.4230 17 7 4.9957 -10.0671 -3.2795 18 14 2.5524 -9.4395 -4.4272 19 1 2.7999 -9.0738 -5.8451 20 1 2.1969 -10.8787 -4.3421 21 1 1.4344 -8.6210 -3.8929 22 6 2.5161 -1.7485 -1.4433 23 1 -0.3634 -0.5137 0.8900 24 1 -0.3634 1.0277 -0.0005 25 1 -0.3634 -0.5139 -0.8900 26 1 4.1969 -0.3796 0.1884 27 1 3.4211 -0.7824 1.7388 28 1 5.2943 -2.3282 1.2800 29 1 3.7438 -3.2032 1.2564 30 1 5.3117 -2.2085 -1.1678 31 1 5.0792 -3.9040 -0.6740 32 1 4.8316 -5.0477 -2.4929 33 1 3.9970 -5.6192 -1.0283 34 1 4.8593 -10.9326 -3.6956 35 1 1.5673 -1.9760 -1.9292 36 1 3.0226 -0.9506 -1.9863 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707755419.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:47 Heat of formation + Delta-G solvation = -105.616661 kcal Electronic energy + Delta-G solvation = -18561.860939 eV Core-core repulsion = 15557.041102 eV Total energy + Delta-G solvation = -3004.819837 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.55347 -40.36607 -38.10288 -34.66810 -34.24801 -32.84251 -31.23307 -30.14332 -27.86525 -26.27248 -24.96906 -22.52323 -20.61683 -20.30075 -19.50010 -18.28403 -17.25128 -17.02950 -16.96062 -16.59036 -16.10395 -15.99860 -15.62788 -15.15038 -14.91194 -14.82835 -14.50324 -14.19892 -13.82748 -13.53543 -13.34572 -13.16728 -13.01360 -13.00288 -12.65067 -12.50474 -12.05557 -11.98509 -11.85382 -11.65656 -11.16430 -11.03659 -10.58208 -10.50376 -9.77265 -8.99548 -8.50900 -6.21857 0.83499 0.99916 1.32404 1.46591 1.49486 1.54585 2.01898 2.25683 2.68129 2.87631 3.04744 3.46111 3.69440 3.79210 3.92181 4.01763 4.17672 4.19121 4.28012 4.40387 4.48783 4.53241 4.61176 4.63824 4.74371 4.77066 4.89448 5.03215 5.06793 5.16212 5.34601 5.43972 5.71460 6.12219 6.19451 6.47137 6.94409 7.03169 8.61503 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.037013 B = 0.004067 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.312170 B = 6882.558500 C = 7434.615583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.371 3.629 3 O -0.489 6.489 4 C -0.150 4.150 5 H 0.111 0.889 6 C -0.105 4.105 7 C -0.127 4.127 8 C 0.095 3.905 9 N -0.603 5.603 10 C 0.537 3.463 11 O -0.559 6.559 12 C -0.107 4.107 13 S -0.175 6.175 14 C -0.528 4.528 15 H 0.063 0.937 16 C 0.047 3.953 17 N -0.917 5.917 18 Si 0.913 3.087 19 H -0.263 1.263 20 H -0.259 1.259 21 H -0.236 1.236 22 C 0.127 3.873 23 H 0.114 0.886 24 H 0.083 0.917 25 H 0.105 0.895 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.277 0.723 35 H 0.088 0.912 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.889 19.301 9.842 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.248 3.752 3 O -0.365 6.365 4 C -0.170 4.170 5 H 0.129 0.871 6 C -0.143 4.143 7 C -0.165 4.165 8 C -0.027 4.027 9 N -0.337 5.337 10 C 0.325 3.675 11 O -0.437 6.437 12 C -0.257 4.257 13 S 0.052 5.948 14 C -0.676 4.676 15 H 0.081 0.919 16 C -0.159 4.159 17 N -0.555 5.555 18 Si 0.735 3.265 19 H -0.188 1.188 20 H -0.184 1.184 21 H -0.159 1.159 22 C 0.004 3.996 23 H 0.132 0.868 24 H 0.102 0.898 25 H 0.123 0.877 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.120 0.880 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.034 19.649 8.922 22.407 hybrid contribution 1.037 -0.712 0.191 1.272 sum -4.997 18.937 9.112 21.601 Atomic orbital electron populations 1.22394 0.91944 1.05549 1.06277 1.24834 0.93175 0.88892 0.68313 1.90403 1.72991 1.35952 1.37143 1.22161 0.99266 0.97771 0.97777 0.87065 1.21425 0.94095 0.97872 1.00880 1.21898 1.02385 0.96848 0.95393 1.22110 0.84097 1.03977 0.92541 1.48008 1.22782 1.11533 1.51376 1.20008 0.85596 0.83854 0.78051 1.90675 1.25455 1.83413 1.44192 1.23282 1.02348 0.94943 1.05173 1.84701 1.31950 1.08791 1.69360 1.22455 1.07377 0.99426 1.38343 0.91885 1.25549 0.99455 0.94663 0.96214 1.70016 1.36133 1.04945 1.44427 0.85881 0.81008 0.79436 0.80142 1.18783 1.18371 1.15939 1.21370 0.96525 0.86467 0.95203 0.86792 0.89846 0.87679 0.91347 0.90501 0.87959 0.91195 0.89563 0.88866 0.87129 0.86771 0.91370 0.89316 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.23 10.24 71.23 0.73 -1.50 16 2 C 0.37 6.13 6.33 29.10 0.18 6.32 16 3 O -0.49 -11.41 16.93 -1.46 -0.02 -11.43 16 4 C -0.15 -2.40 2.61 -11.46 -0.03 -2.43 16 5 H 0.11 1.61 8.12 -2.39 -0.02 1.59 16 6 C -0.11 -1.54 4.74 30.62 0.15 -1.40 16 7 C -0.13 -1.74 6.08 30.67 0.19 -1.55 16 8 C 0.09 1.68 6.33 86.36 0.55 2.22 16 9 N -0.60 -14.63 2.98 -818.82 -2.44 -17.07 16 10 C 0.54 18.14 7.72 87.66 0.68 18.81 16 11 O -0.56 -23.03 15.28 -3.05 -0.05 -23.08 16 12 C -0.11 -3.93 4.50 71.24 0.32 -3.61 16 13 S -0.17 -8.66 18.55 -56.49 -1.05 -9.71 16 14 C -0.53 -30.28 10.04 67.96 0.68 -29.60 16 15 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 16 C 0.05 2.70 5.50 84.86 0.47 3.17 16 17 N -0.92 -55.29 13.97 21.65 0.30 -54.98 16 18 Si 0.91 44.38 27.74 68.60 1.90 46.28 16 19 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.24 -11.38 6.74 99.48 0.67 -10.71 16 22 C 0.13 2.65 5.69 86.36 0.49 3.14 16 23 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.08 0.92 8.12 -2.38 -0.02 0.90 16 25 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.07 1.12 7.90 -2.39 -0.02 1.10 16 27 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.69 5.95 -2.39 -0.01 1.68 16 32 H 0.11 3.78 7.95 -2.39 -0.02 3.76 16 33 H 0.11 3.83 7.69 -2.40 -0.02 3.81 16 34 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.09 2.07 7.01 -2.39 -0.02 2.05 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -73.22 312.26 4.07 -69.15 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 1.03 Total: 7.26 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 4.40 Total: -6.42 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: -2.14 Total: -72.05 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.07 Total: -34.51 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.90 Total: 46.28 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.05 Total: -9.71 kcal Total: -73.22 4.07 -69.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707755419.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.467 kcal (2) G-P(sol) polarization free energy of solvation -73.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds