Wall clock time and date at job start Mon Mar 30 2020 04:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47272 * 80.55301 * 3 2 1 5 5 C 1.52999 * 109.47188 * 179.97438 * 4 3 2 6 6 S 1.81401 * 109.47400 * 179.97438 * 5 4 3 7 7 O 1.42098 * 110.54336 * 68.36842 * 6 5 4 8 8 O 1.42103 * 110.54175 * 291.62486 * 6 5 4 9 9 N 1.65598 * 104.45361 * 180.02562 * 6 5 4 10 10 C 1.47426 * 125.65034 * 90.02475 * 9 6 5 11 11 C 1.54901 * 104.83400 * 155.83651 * 10 9 6 12 12 C 1.55157 * 101.58260 * 37.01041 * 11 10 9 13 13 H 1.08996 * 110.72695 * 82.85914 * 12 11 10 14 14 C 1.50708 * 110.72100 * 206.13712 * 12 11 10 15 15 H 1.08001 * 119.99956 * 118.54311 * 14 12 11 16 16 C 1.37874 * 119.99876 * 298.54277 * 14 12 11 17 17 N 1.31521 * 119.99706 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 120.00251 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47100 * 60.00017 * 18 16 14 20 20 H 1.48498 * 109.47469 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47319 * 300.00308 * 18 16 14 22 22 C 1.47019 * 125.64590 * 269.98191 * 9 6 5 23 23 H 4.44642 * 5.63403 * 179.97438 * 4 1 2 24 24 H 1.09002 * 109.47491 * 320.54871 * 3 2 1 25 25 H 1.09011 * 109.47218 * 200.54488 * 3 2 1 26 26 H 1.08997 * 109.47398 * 59.99845 * 4 3 2 27 27 H 1.08999 * 109.46969 * 299.99569 * 4 3 2 28 28 H 1.09002 * 109.47362 * 59.99701 * 5 4 3 29 29 H 1.09001 * 109.47590 * 299.99337 * 5 4 3 30 30 H 1.09004 * 110.36498 * 36.99618 * 10 9 6 31 31 H 1.08999 * 110.36381 * 274.67879 * 10 9 6 32 32 H 1.09002 * 111.00715 * 278.93203 * 11 10 9 33 33 H 1.09001 * 111.00657 * 155.08109 * 11 10 9 34 34 H 0.97002 * 119.99529 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.88042 * 61.67827 * 22 9 6 36 36 H 1.08996 * 109.88551 * 300.50969 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.2359 -1.4229 5 6 4.6861 -0.2345 -1.4230 6 16 5.2910 -0.5157 -3.1099 7 8 4.9938 0.5996 -3.9386 8 8 4.9960 -1.8405 -3.5310 9 7 6.9406 -0.4911 -2.9669 10 6 7.7971 -1.6601 -2.6961 11 6 9.1867 -1.2728 -3.2604 12 6 9.2550 0.2373 -2.9109 13 1 9.5814 0.3805 -1.8809 14 6 10.1654 0.9651 -3.8663 15 1 9.7730 1.7534 -4.4917 16 6 11.4993 0.6246 -3.9420 17 7 11.9771 -0.3356 -3.1808 18 14 12.6277 1.5261 -5.1266 19 1 12.6452 2.9724 -4.7899 20 1 14.0024 0.9753 -5.0171 21 1 12.1324 1.3472 -6.5151 22 6 7.7936 0.7000 -3.0900 23 1 -1.0499 -0.0002 -0.0001 24 1 3.0097 -0.7927 0.6530 25 1 3.0089 0.9632 0.3607 26 1 2.7924 0.5575 -2.0759 27 1 2.7933 -1.1983 -1.7836 28 1 5.0502 -1.0277 -0.7699 29 1 5.0487 0.7281 -1.0625 30 1 7.4109 -2.5405 -3.2099 31 1 7.8608 -1.8433 -1.6235 32 1 9.2272 -1.4265 -4.3388 33 1 9.9804 -1.8262 -2.7585 34 1 12.9156 -0.5749 -3.2338 35 1 7.5358 1.4221 -2.3153 36 1 7.6647 1.1481 -4.0751 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711174193.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:11 Heat of formation + Delta-G solvation = -30.247152 kcal Electronic energy + Delta-G solvation = -18626.230248 eV Core-core repulsion = 15624.678679 eV Total energy + Delta-G solvation = -3001.551570 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -37.56479 -36.85030 -36.22095 -35.67156 -32.90980 -32.59508 -29.74598 -28.37702 -27.91825 -24.66645 -22.66295 -21.38086 -19.81036 -18.75361 -18.27932 -17.33275 -16.44592 -16.20608 -16.15953 -15.22370 -14.58899 -14.44922 -14.29455 -13.55453 -13.29872 -12.98485 -12.80027 -12.47954 -12.19376 -11.90491 -11.84283 -11.77960 -11.48291 -11.48067 -11.09404 -10.95893 -10.82781 -10.67780 -10.39865 -10.37025 -10.25601 -9.73357 -9.42681 -8.95593 -8.50795 -8.30704 -6.09061 -4.12214 0.43825 2.53522 2.58408 2.98153 3.30517 3.35003 3.38481 3.92814 4.15323 4.24289 4.39828 4.56320 4.64592 4.82196 5.10816 5.24627 5.25232 5.43400 5.50430 5.64490 5.72422 5.77103 5.95700 5.99682 6.17987 6.33037 6.65641 6.81158 6.88056 7.09340 7.21313 7.35245 7.54001 7.74400 7.90787 8.30844 8.88822 9.52471 11.00523 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.041625 B = 0.003844 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.516218 B = 7282.368490 C = 7326.337555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.188 4.188 3 C -0.005 4.005 4 C -0.106 4.106 5 C -0.640 4.640 6 S 2.624 3.376 7 O -0.955 6.955 8 O -0.960 6.960 9 N -1.008 6.008 10 C 0.109 3.891 11 C -0.103 4.103 12 C 0.047 3.953 13 H 0.039 0.961 14 C -0.517 4.517 15 H 0.059 0.941 16 C 0.065 3.935 17 N -0.889 5.889 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.123 3.877 23 H 0.217 0.783 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.262 0.738 35 H 0.044 0.956 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.096 -1.139 7.152 16.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.188 4.188 3 C -0.043 4.043 4 C -0.145 4.145 5 C -0.767 4.767 6 S 2.718 3.282 7 O -0.946 6.946 8 O -0.951 6.951 9 N -0.848 5.848 10 C -0.016 4.016 11 C -0.143 4.143 12 C 0.027 3.973 13 H 0.057 0.943 14 C -0.555 4.555 15 H 0.078 0.922 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.002 4.002 23 H 0.234 0.766 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.151 0.849 29 H 0.152 0.848 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.493 -1.368 6.394 16.817 hybrid contribution 0.619 0.581 0.227 0.879 sum -14.874 -0.787 6.621 16.300 Atomic orbital electron populations 1.24928 0.95982 1.01243 1.00416 1.23134 0.94567 1.00390 1.00747 1.18693 0.84647 1.03856 0.97093 1.21234 0.90968 1.04067 0.98267 1.30805 1.05284 1.12343 1.28304 1.04501 0.72590 0.74167 0.76987 1.93575 1.83542 1.54237 1.63235 1.93559 1.83695 1.37983 1.79834 1.58507 1.22035 1.17170 1.87050 1.22262 0.93256 0.86954 0.99140 1.22709 0.91748 0.99477 1.00328 1.19705 0.87958 0.91963 0.97675 0.94339 1.21041 0.93352 1.19009 1.22128 0.92239 1.24951 0.98053 0.95047 0.95714 1.69934 1.14513 1.29285 1.38982 0.86625 0.79610 0.79996 0.81578 1.20226 1.21338 1.20201 1.22120 0.93036 0.84804 1.00212 0.76571 0.89015 0.88970 0.89941 0.89983 0.84889 0.84780 0.91459 0.92884 0.92204 0.89932 0.92864 0.93784 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.87 19.25 29.55 0.57 -1.30 16 2 C -0.19 -1.90 13.34 -37.13 -0.50 -2.40 16 3 C -0.01 -0.05 5.70 -29.52 -0.17 -0.22 16 4 C -0.11 -1.07 5.18 -26.73 -0.14 -1.21 16 5 C -0.64 -6.73 6.18 37.16 0.23 -6.50 16 6 S 2.62 40.96 5.65 -107.50 -0.61 40.36 16 7 O -0.96 -17.80 17.60 -57.54 -1.01 -18.81 16 8 O -0.96 -17.25 17.28 -57.54 -0.99 -18.25 16 9 N -1.01 -17.85 3.62 -111.42 -0.40 -18.26 16 10 C 0.11 1.94 7.07 -2.53 -0.02 1.92 16 11 C -0.10 -2.25 5.75 -24.59 -0.14 -2.39 16 12 C 0.05 1.09 2.88 -89.93 -0.26 0.83 16 13 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 14 C -0.52 -13.53 8.50 -34.44 -0.29 -13.82 16 15 H 0.06 1.54 7.57 -52.49 -0.40 1.15 16 16 C 0.06 1.71 5.33 -17.82 -0.10 1.62 16 17 N -0.89 -24.21 12.11 55.43 0.67 -23.54 16 18 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.12 2.44 6.48 -3.06 -0.02 2.42 16 23 H 0.22 1.18 7.80 -54.09 -0.42 0.75 16 24 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.13 1.15 8.14 -51.92 -0.42 0.73 16 29 H 0.13 1.22 8.14 -51.92 -0.42 0.79 16 30 H 0.07 1.15 7.67 -51.93 -0.40 0.75 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 1.39 8.04 -51.93 -0.42 0.97 16 33 H 0.08 1.88 7.54 -51.93 -0.39 1.49 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.41 7.66 -51.93 -0.40 1.01 16 LS Contribution 320.64 15.07 4.83 4.83 Total: -1.00 -31.75 320.64 -8.73 -40.48 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -5.36 Total: -1.44 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: -0.83 Total: -21.04 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.27 Total: -41.80 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -2.01 Total: -37.06 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 40.96 SS G_CDS: -0.61 Total: 40.36 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.75 -8.73 -40.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711174193.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.232 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds