Wall clock time and date at job start Mon Mar 30 2020 04:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47272 * 80.55301 * 3 2 1 5 5 C 1.52999 * 109.47188 * 179.97438 * 4 3 2 6 6 S 1.81401 * 109.47400 * 179.97438 * 5 4 3 7 7 O 1.42098 * 110.54336 * 68.36842 * 6 5 4 8 8 O 1.42103 * 110.54175 * 291.62486 * 6 5 4 9 9 N 1.65598 * 104.45361 * 180.02562 * 6 5 4 10 10 C 1.47426 * 125.65034 * 90.02475 * 9 6 5 11 11 C 1.54901 * 104.83400 * 155.83651 * 10 9 6 12 12 C 1.55157 * 101.58260 * 37.01041 * 11 10 9 13 13 H 1.08996 * 110.72695 * 82.85914 * 12 11 10 14 14 C 1.50708 * 110.72100 * 206.13712 * 12 11 10 15 15 H 1.08001 * 119.99956 * 118.54311 * 14 12 11 16 16 C 1.37874 * 119.99876 * 298.54277 * 14 12 11 17 17 N 1.31521 * 119.99706 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 120.00251 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47100 * 60.00017 * 18 16 14 20 20 H 1.48498 * 109.47469 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47319 * 300.00308 * 18 16 14 22 22 C 1.47019 * 125.64590 * 269.98191 * 9 6 5 23 23 H 4.44642 * 5.63403 * 179.97438 * 4 1 2 24 24 H 1.09002 * 109.47491 * 320.54871 * 3 2 1 25 25 H 1.09011 * 109.47218 * 200.54488 * 3 2 1 26 26 H 1.08997 * 109.47398 * 59.99845 * 4 3 2 27 27 H 1.08999 * 109.46969 * 299.99569 * 4 3 2 28 28 H 1.09002 * 109.47362 * 59.99701 * 5 4 3 29 29 H 1.09001 * 109.47590 * 299.99337 * 5 4 3 30 30 H 1.09004 * 110.36498 * 36.99618 * 10 9 6 31 31 H 1.08999 * 110.36381 * 274.67879 * 10 9 6 32 32 H 1.09002 * 111.00715 * 278.93203 * 11 10 9 33 33 H 1.09001 * 111.00657 * 155.08109 * 11 10 9 34 34 H 0.97002 * 119.99529 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.88042 * 61.67827 * 22 9 6 36 36 H 1.08996 * 109.88551 * 300.50969 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.2359 -1.4229 5 6 4.6861 -0.2345 -1.4230 6 16 5.2910 -0.5157 -3.1099 7 8 4.9938 0.5996 -3.9386 8 8 4.9960 -1.8405 -3.5310 9 7 6.9406 -0.4911 -2.9669 10 6 7.7971 -1.6601 -2.6961 11 6 9.1867 -1.2728 -3.2604 12 6 9.2550 0.2373 -2.9109 13 1 9.5814 0.3805 -1.8809 14 6 10.1654 0.9651 -3.8663 15 1 9.7730 1.7534 -4.4917 16 6 11.4993 0.6246 -3.9420 17 7 11.9771 -0.3356 -3.1808 18 14 12.6277 1.5261 -5.1266 19 1 12.6452 2.9724 -4.7899 20 1 14.0024 0.9753 -5.0171 21 1 12.1324 1.3472 -6.5151 22 6 7.7936 0.7000 -3.0900 23 1 -1.0499 -0.0002 -0.0001 24 1 3.0097 -0.7927 0.6530 25 1 3.0089 0.9632 0.3607 26 1 2.7924 0.5575 -2.0759 27 1 2.7933 -1.1983 -1.7836 28 1 5.0502 -1.0277 -0.7699 29 1 5.0487 0.7281 -1.0625 30 1 7.4109 -2.5405 -3.2099 31 1 7.8608 -1.8433 -1.6235 32 1 9.2272 -1.4265 -4.3388 33 1 9.9804 -1.8262 -2.7585 34 1 12.9156 -0.5749 -3.2338 35 1 7.5358 1.4221 -2.3153 36 1 7.6647 1.1481 -4.0751 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711174193.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:11 Heat of formation + Delta-G solvation = -51.292346 kcal Electronic energy + Delta-G solvation = -18627.142836 eV Core-core repulsion = 15624.678679 eV Total energy + Delta-G solvation = -3002.464158 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.15281 -38.18347 -37.07150 -36.86963 -34.82823 -33.32526 -31.47030 -29.98529 -28.68033 -26.56030 -23.58974 -22.78137 -21.58247 -19.89013 -19.22565 -18.72316 -18.10175 -17.45439 -17.20938 -16.50378 -16.30872 -15.90568 -15.07583 -14.63451 -14.49243 -14.33423 -14.01259 -13.96193 -13.52744 -13.25236 -13.21973 -13.09878 -12.98710 -12.95433 -12.67737 -12.43569 -12.23420 -12.10846 -11.87909 -11.51162 -11.22435 -11.08961 -11.00389 -10.87562 -10.46631 -9.75524 -8.11767 -6.20060 -0.76180 1.44764 1.45974 1.52849 1.67298 1.87630 1.91890 2.45660 2.89329 3.10933 3.20691 3.35274 3.78002 3.81523 3.94754 4.12526 4.31528 4.44110 4.53135 4.55378 4.60529 4.73203 4.80690 4.96830 4.99723 5.05824 5.17837 5.19468 5.33970 5.39505 5.50106 5.69099 5.85475 5.98108 6.35710 6.70360 6.86899 7.46886 8.96715 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.041625 B = 0.003844 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.516218 B = 7282.368490 C = 7326.337555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.223 4.223 3 C -0.004 4.004 4 C -0.115 4.115 5 C -0.601 4.601 6 S 2.619 3.381 7 O -0.994 6.994 8 O -0.990 6.990 9 N -1.015 6.015 10 C 0.117 3.883 11 C -0.101 4.101 12 C 0.038 3.962 13 H 0.027 0.973 14 C -0.537 4.537 15 H 0.053 0.947 16 C 0.019 3.981 17 N -0.912 5.912 18 Si 0.950 3.050 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.278 1.278 22 C 0.131 3.869 23 H 0.243 0.757 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.165 0.835 29 H 0.160 0.840 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.032 0.968 33 H 0.067 0.933 34 H 0.262 0.738 35 H 0.073 0.927 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.446 -0.851 8.868 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.224 4.224 3 C -0.042 4.042 4 C -0.154 4.154 5 C -0.734 4.734 6 S 2.720 3.280 7 O -0.985 6.985 8 O -0.981 6.981 9 N -0.853 5.853 10 C -0.008 4.008 11 C -0.141 4.141 12 C 0.018 3.982 13 H 0.045 0.955 14 C -0.575 4.575 15 H 0.071 0.929 16 C -0.180 4.180 17 N -0.551 5.551 18 Si 0.776 3.224 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.203 1.203 22 C 0.006 3.994 23 H 0.259 0.741 24 H 0.127 0.873 25 H 0.125 0.875 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.183 0.817 29 H 0.178 0.822 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -16.815 -1.088 8.048 18.674 hybrid contribution 0.913 0.491 -0.263 1.070 sum -15.902 -0.597 7.785 17.716 Atomic orbital electron populations 1.25746 0.97028 1.00408 0.99299 1.23676 0.95587 1.01303 1.01795 1.18746 0.84068 1.05326 0.96018 1.21358 0.90270 1.04211 0.99595 1.30448 1.05498 1.15057 1.22425 1.04507 0.71619 0.72902 0.79006 1.93525 1.83563 1.55023 1.66391 1.93517 1.83556 1.39195 1.81828 1.58432 1.22696 1.16098 1.88075 1.22181 0.90573 0.87118 1.00934 1.22515 0.94225 0.98750 0.98614 1.19673 0.89680 0.92670 0.96199 0.95469 1.21420 0.94317 1.19163 1.22598 0.92917 1.25631 0.99404 0.95835 0.97176 1.70030 1.14669 1.30261 1.40121 0.85742 0.77934 0.79206 0.79534 1.19523 1.20926 1.20322 1.21828 0.91505 0.86023 1.00048 0.74079 0.87327 0.87541 0.90255 0.89964 0.81745 0.82183 0.90856 0.89511 0.94913 0.91484 0.92930 0.90830 0.93859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.24 19.25 74.32 1.43 -1.81 16 2 C -0.22 -3.96 13.34 31.12 0.42 -3.55 16 3 C 0.00 -0.06 5.70 28.79 0.16 0.11 16 4 C -0.12 -1.95 5.18 30.59 0.16 -1.79 16 5 C -0.60 -10.22 6.18 71.98 0.44 -9.78 16 6 S 2.62 77.89 5.65 -56.49 -0.32 77.57 16 7 O -0.99 -36.69 17.60 -127.65 -2.25 -38.94 16 8 O -0.99 -34.66 17.28 -127.65 -2.21 -36.86 16 9 N -1.02 -34.69 3.62 -506.43 -1.83 -36.52 16 10 C 0.12 4.01 7.07 86.85 0.61 4.63 16 11 C -0.10 -4.50 5.75 31.98 0.18 -4.32 16 12 C 0.04 1.77 2.88 -10.35 -0.03 1.74 16 13 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 14 C -0.54 -28.63 8.50 25.60 0.22 -28.42 16 15 H 0.05 2.80 7.57 -2.91 -0.02 2.78 16 16 C 0.02 1.04 5.33 84.65 0.45 1.49 16 17 N -0.91 -50.42 12.11 21.45 0.26 -50.16 16 18 Si 0.95 42.83 29.54 68.60 2.03 44.86 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 22 C 0.13 5.16 6.48 86.73 0.56 5.72 16 23 H 0.24 1.97 7.80 -4.42 -0.03 1.94 16 24 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 27 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.16 1.94 8.14 -2.39 -0.02 1.93 16 29 H 0.16 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.07 2.43 7.67 -2.38 -0.02 2.41 16 31 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.03 1.57 8.04 -2.39 -0.02 1.56 16 33 H 0.07 3.13 7.54 -2.39 -0.02 3.12 16 34 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 35 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.04 1.87 7.66 -2.39 -0.02 1.86 16 Total: -1.00 -70.18 320.64 1.34 -68.84 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 1.05 Total: 7.19 kcal Atomic # 6 Polarization: -40.59 SS G_CDS: 4.61 Total: -35.98 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -1.57 Total: -86.69 kcal Atomic # 8 Polarization: -71.35 SS G_CDS: -4.45 Total: -75.80 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 77.89 SS G_CDS: -0.32 Total: 77.57 kcal Total: -70.18 1.34 -68.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711174193.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.549 kcal (2) G-P(sol) polarization free energy of solvation -70.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds