Wall clock time and date at job start Mon Mar 30 2020 04:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46702 * 85.70988 * 3 2 1 5 5 C 1.53005 * 109.46714 * 179.97438 * 4 3 2 6 6 S 1.81400 * 109.46901 * 180.02562 * 5 4 3 7 7 O 1.42096 * 110.54691 * 68.37396 * 6 5 4 8 8 O 1.42108 * 110.54495 * 291.62323 * 6 5 4 9 9 N 1.65602 * 104.44912 * 180.02562 * 6 5 4 10 10 C 1.47018 * 125.65057 * 89.97409 * 9 6 5 11 11 C 1.54325 * 107.40412 * 178.89919 * 10 9 6 12 12 C 1.55405 * 102.82616 * 337.97548 * 11 10 9 13 13 H 1.09000 * 110.89538 * 277.26533 * 12 11 10 14 14 C 1.50704 * 111.07313 * 153.48318 * 12 11 10 15 15 H 1.07997 * 120.00130 * 247.66801 * 14 12 11 16 16 C 1.37876 * 119.99522 * 67.66152 * 14 12 11 17 17 N 1.31520 * 120.00267 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 120.00088 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46770 * 60.00138 * 18 16 14 20 20 H 1.48494 * 109.47223 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46900 * 300.00321 * 18 16 14 22 22 C 1.47426 * 125.64425 * 270.01348 * 9 6 5 23 23 H 4.44642 * 5.63317 * 180.02562 * 4 1 2 24 24 H 1.08997 * 109.47485 * 325.71507 * 3 2 1 25 25 H 1.08997 * 109.47341 * 205.70693 * 3 2 1 26 26 H 1.08998 * 109.47311 * 60.00536 * 4 3 2 27 27 H 1.08995 * 109.47635 * 299.99571 * 4 3 2 28 28 H 1.09004 * 109.47145 * 60.00309 * 5 4 3 29 29 H 1.08997 * 109.47403 * 299.99750 * 5 4 3 30 30 H 1.09002 * 109.88241 * 298.39447 * 10 9 6 31 31 H 1.09000 * 109.88049 * 59.40576 * 10 9 6 32 32 H 1.09000 * 110.72188 * 96.24097 * 11 10 9 33 33 H 1.09002 * 110.72265 * 219.52294 * 11 10 9 34 34 H 0.96993 * 120.00181 * 179.97438 * 17 16 14 35 35 H 1.08999 * 110.36956 * 322.93619 * 22 9 6 36 36 H 1.09001 * 110.36709 * 85.14812 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 -0.1070 -1.4385 5 6 4.6860 -0.1057 -1.4386 6 16 5.2907 -0.2326 -3.1441 7 8 4.9935 0.9534 -3.8682 8 8 4.9957 -1.5137 -3.6838 9 7 6.9403 -0.2211 -2.9996 10 6 7.7944 -1.4064 -2.8355 11 6 9.2565 -0.9167 -2.7719 12 6 9.1862 0.4707 -3.4685 13 1 9.2277 0.3640 -4.5525 14 6 10.2820 1.3805 -2.9759 15 1 10.0364 2.2523 -2.3878 16 6 11.5981 1.0997 -3.2761 17 7 11.8971 0.0382 -3.9927 18 14 12.9565 2.2270 -2.6650 19 1 12.9295 2.2753 -1.1810 20 1 14.2717 1.7090 -3.1200 21 1 12.7481 3.5931 -3.2086 22 6 7.7956 0.9796 -3.0135 23 1 -1.0499 0.0002 0.0000 24 1 3.0098 -0.8482 0.5789 25 1 3.0090 0.9267 0.4457 26 1 2.7923 0.7419 -2.0175 27 1 2.7932 -1.0331 -1.8844 28 1 5.0501 -0.9544 -0.8595 29 1 5.0486 0.8206 -0.9930 30 1 7.5364 -1.9242 -1.9117 31 1 7.6648 -2.0772 -3.6849 32 1 9.5835 -0.8120 -1.7374 33 1 9.9138 -1.5926 -3.3188 34 1 12.8229 -0.1591 -4.2042 35 1 7.4093 1.7124 -3.7219 36 1 7.8566 1.4135 -2.0154 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711174194.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:14 Heat of formation + Delta-G solvation = -31.122341 kcal Electronic energy + Delta-G solvation = -18604.635018 eV Core-core repulsion = 15603.045498 eV Total energy + Delta-G solvation = -3001.589521 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -37.54992 -36.85852 -36.22304 -35.68034 -32.90566 -32.59730 -29.78945 -28.38232 -27.92635 -24.69213 -22.66936 -21.34582 -19.85432 -18.76535 -18.28400 -17.31339 -16.60787 -16.22003 -15.98868 -15.21664 -14.59379 -14.44483 -14.33950 -13.53048 -13.31317 -13.03717 -12.84052 -12.41261 -12.20708 -11.93816 -11.85373 -11.80616 -11.59716 -11.48449 -11.10908 -10.97156 -10.77139 -10.71882 -10.40277 -10.37268 -10.27637 -9.76847 -9.41167 -8.98162 -8.47238 -8.35386 -6.09695 -4.13660 0.43169 2.53323 2.58224 2.97143 3.28292 3.33768 3.35825 3.92275 4.14712 4.23701 4.38087 4.56010 4.64140 4.81929 5.10450 5.23215 5.25046 5.43538 5.49970 5.64251 5.72126 5.76585 5.88071 6.01223 6.21929 6.33662 6.59584 6.79308 6.86779 7.03578 7.19740 7.35056 7.48968 7.72724 7.91226 8.29572 8.88409 9.51112 11.00367 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.034693 B = 0.003966 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.884916 B = 7058.272752 C = 7386.957859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.188 4.188 3 C -0.005 4.005 4 C -0.107 4.107 5 C -0.639 4.639 6 S 2.624 3.376 7 O -0.956 6.956 8 O -0.960 6.960 9 N -1.009 6.009 10 C 0.118 3.882 11 C -0.110 4.110 12 C 0.050 3.950 13 H 0.043 0.957 14 C -0.517 4.517 15 H 0.059 0.941 16 C 0.065 3.935 17 N -0.887 5.887 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.116 3.884 23 H 0.217 0.783 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.262 0.738 35 H 0.067 0.933 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.046 -1.751 7.890 17.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.188 4.188 3 C -0.043 4.043 4 C -0.145 4.145 5 C -0.767 4.767 6 S 2.718 3.282 7 O -0.946 6.946 8 O -0.950 6.950 9 N -0.849 5.849 10 C -0.007 4.007 11 C -0.149 4.149 12 C 0.030 3.970 13 H 0.062 0.938 14 C -0.556 4.556 15 H 0.077 0.923 16 C -0.137 4.137 17 N -0.525 5.525 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.008 4.008 23 H 0.234 0.766 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.151 0.849 29 H 0.153 0.847 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.460 -1.921 6.998 17.078 hybrid contribution 0.749 0.571 1.180 1.510 sum -14.711 -1.350 8.178 16.885 Atomic orbital electron populations 1.24928 0.95982 1.01257 1.00394 1.23135 0.94567 1.00385 1.00759 1.18692 0.84647 1.04001 0.96945 1.21238 0.90965 1.04205 0.98132 1.30802 1.05277 1.11976 1.28655 1.04492 0.72557 0.74106 0.77049 1.93574 1.83502 1.49226 1.68311 1.93562 1.83705 1.41822 1.75939 1.58509 1.22079 1.15574 1.88701 1.21881 0.93316 0.86258 0.99269 1.22685 0.90716 1.00254 1.01279 1.19855 0.88750 0.91697 0.96714 0.93848 1.20939 0.90660 1.09818 1.34160 0.92272 1.24969 0.98733 0.95234 0.94805 1.69940 1.18850 1.26033 1.37658 0.86632 0.81017 0.81029 0.79139 1.20261 1.21330 1.20199 1.22408 0.92746 0.85376 1.00261 0.76569 0.89027 0.88967 0.89930 0.89983 0.84916 0.84748 0.93524 0.92174 0.92270 0.90409 0.92796 0.91451 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.87 19.25 29.55 0.57 -1.30 16 2 C -0.19 -1.90 13.34 -37.12 -0.50 -2.40 16 3 C -0.01 -0.05 5.70 -29.51 -0.17 -0.21 16 4 C -0.11 -1.07 5.18 -26.73 -0.14 -1.21 16 5 C -0.64 -6.70 6.18 37.16 0.23 -6.47 16 6 S 2.62 40.72 5.65 -107.50 -0.61 40.11 16 7 O -0.96 -17.62 17.28 -57.54 -0.99 -18.62 16 8 O -0.96 -17.23 17.60 -57.54 -1.01 -18.24 16 9 N -1.01 -17.78 3.62 -111.42 -0.40 -18.18 16 10 C 0.12 2.10 6.89 -3.07 -0.02 2.08 16 11 C -0.11 -2.33 5.92 -24.76 -0.15 -2.48 16 12 C 0.05 1.18 2.85 -89.48 -0.25 0.93 16 13 H 0.04 1.14 8.14 -51.93 -0.42 0.71 16 14 C -0.52 -13.33 8.50 -34.44 -0.29 -13.63 16 15 H 0.06 1.48 7.77 -52.49 -0.41 1.07 16 16 C 0.07 1.72 5.37 -17.82 -0.10 1.63 16 17 N -0.89 -24.41 12.62 55.43 0.70 -23.71 16 18 Si 0.89 20.38 29.54 -169.99 -5.02 15.35 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 C 0.12 2.30 6.51 -2.53 -0.02 2.28 16 23 H 0.22 1.17 7.80 -54.09 -0.42 0.75 16 24 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.13 1.15 8.14 -51.92 -0.42 0.73 16 29 H 0.13 1.21 8.14 -51.92 -0.42 0.79 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.25 8.03 -51.93 -0.42 0.83 16 33 H 0.08 1.77 7.86 -51.93 -0.41 1.37 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.07 1.34 7.67 -51.93 -0.40 0.94 16 36 H 0.06 1.02 8.02 -51.93 -0.42 0.60 16 LS Contribution 322.07 15.07 4.85 4.85 Total: -1.00 -31.73 322.07 -8.73 -40.46 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.41 Total: -1.25 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -0.83 Total: -20.78 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.30 Total: -41.89 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -2.01 Total: -36.86 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 40.72 SS G_CDS: -0.61 Total: 40.11 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.73 -8.73 -40.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711174194.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.333 kcal (2) G-P(sol) polarization free energy of solvation -31.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds