Wall clock time and date at job start Mon Mar 30 2020 04:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46702 * 85.70988 * 3 2 1 5 5 C 1.53005 * 109.46714 * 179.97438 * 4 3 2 6 6 S 1.81400 * 109.46901 * 180.02562 * 5 4 3 7 7 O 1.42096 * 110.54691 * 68.37396 * 6 5 4 8 8 O 1.42108 * 110.54495 * 291.62323 * 6 5 4 9 9 N 1.65602 * 104.44912 * 180.02562 * 6 5 4 10 10 C 1.47018 * 125.65057 * 89.97409 * 9 6 5 11 11 C 1.54325 * 107.40412 * 178.89919 * 10 9 6 12 12 C 1.55405 * 102.82616 * 337.97548 * 11 10 9 13 13 H 1.09000 * 110.89538 * 277.26533 * 12 11 10 14 14 C 1.50704 * 111.07313 * 153.48318 * 12 11 10 15 15 H 1.07997 * 120.00130 * 247.66801 * 14 12 11 16 16 C 1.37876 * 119.99522 * 67.66152 * 14 12 11 17 17 N 1.31520 * 120.00267 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 120.00088 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46770 * 60.00138 * 18 16 14 20 20 H 1.48494 * 109.47223 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46900 * 300.00321 * 18 16 14 22 22 C 1.47426 * 125.64425 * 270.01348 * 9 6 5 23 23 H 4.44642 * 5.63317 * 180.02562 * 4 1 2 24 24 H 1.08997 * 109.47485 * 325.71507 * 3 2 1 25 25 H 1.08997 * 109.47341 * 205.70693 * 3 2 1 26 26 H 1.08998 * 109.47311 * 60.00536 * 4 3 2 27 27 H 1.08995 * 109.47635 * 299.99571 * 4 3 2 28 28 H 1.09004 * 109.47145 * 60.00309 * 5 4 3 29 29 H 1.08997 * 109.47403 * 299.99750 * 5 4 3 30 30 H 1.09002 * 109.88241 * 298.39447 * 10 9 6 31 31 H 1.09000 * 109.88049 * 59.40576 * 10 9 6 32 32 H 1.09000 * 110.72188 * 96.24097 * 11 10 9 33 33 H 1.09002 * 110.72265 * 219.52294 * 11 10 9 34 34 H 0.96993 * 120.00181 * 179.97438 * 17 16 14 35 35 H 1.08999 * 110.36956 * 322.93619 * 22 9 6 36 36 H 1.09001 * 110.36709 * 85.14812 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 -0.1070 -1.4385 5 6 4.6860 -0.1057 -1.4386 6 16 5.2907 -0.2326 -3.1441 7 8 4.9935 0.9534 -3.8682 8 8 4.9957 -1.5137 -3.6838 9 7 6.9403 -0.2211 -2.9996 10 6 7.7944 -1.4064 -2.8355 11 6 9.2565 -0.9167 -2.7719 12 6 9.1862 0.4707 -3.4685 13 1 9.2277 0.3640 -4.5525 14 6 10.2820 1.3805 -2.9759 15 1 10.0364 2.2523 -2.3878 16 6 11.5981 1.0997 -3.2761 17 7 11.8971 0.0382 -3.9927 18 14 12.9565 2.2270 -2.6650 19 1 12.9295 2.2753 -1.1810 20 1 14.2717 1.7090 -3.1200 21 1 12.7481 3.5931 -3.2086 22 6 7.7956 0.9796 -3.0135 23 1 -1.0499 0.0002 0.0000 24 1 3.0098 -0.8482 0.5789 25 1 3.0090 0.9267 0.4457 26 1 2.7923 0.7419 -2.0175 27 1 2.7932 -1.0331 -1.8844 28 1 5.0501 -0.9544 -0.8595 29 1 5.0486 0.8206 -0.9930 30 1 7.5364 -1.9242 -1.9117 31 1 7.6648 -2.0772 -3.6849 32 1 9.5835 -0.8120 -1.7374 33 1 9.9138 -1.5926 -3.3188 34 1 12.8229 -0.1591 -4.2042 35 1 7.4093 1.7124 -3.7219 36 1 7.8566 1.4135 -2.0154 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711174194.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:14 Heat of formation + Delta-G solvation = -52.267799 kcal Electronic energy + Delta-G solvation = -18605.551954 eV Core-core repulsion = 15603.045498 eV Total energy + Delta-G solvation = -3002.506457 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.13105 -38.18794 -37.07421 -36.86983 -34.81402 -33.32460 -31.50391 -29.98548 -28.68304 -26.57074 -23.59003 -22.73768 -21.62956 -19.90282 -19.18880 -18.72773 -18.19958 -17.32509 -17.22680 -16.48123 -16.31145 -15.90802 -15.07767 -14.65222 -14.51383 -14.27027 -13.99769 -13.95737 -13.67680 -13.31000 -13.22134 -13.10873 -12.97004 -12.91974 -12.55807 -12.44951 -12.23290 -12.11502 -11.88766 -11.52177 -11.20978 -11.09029 -11.00356 -10.88913 -10.45264 -9.76075 -8.10401 -6.20332 -0.76461 1.47745 1.48996 1.56053 1.66865 1.87612 1.91933 2.47289 2.89051 3.10545 3.22416 3.35352 3.78047 3.81731 3.95427 4.12434 4.31231 4.42007 4.47399 4.55621 4.64474 4.73148 4.80889 4.96395 4.99463 5.05966 5.15302 5.17883 5.34319 5.36459 5.55454 5.66084 5.83621 5.94937 6.34238 6.70403 6.89188 7.47683 8.99423 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.034693 B = 0.003966 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.884916 B = 7058.272752 C = 7386.957859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.223 4.223 3 C -0.004 4.004 4 C -0.115 4.115 5 C -0.600 4.600 6 S 2.619 3.381 7 O -0.994 6.994 8 O -0.991 6.991 9 N -1.016 6.016 10 C 0.122 3.878 11 C -0.102 4.102 12 C 0.034 3.966 13 H 0.000 1.000 14 C -0.529 4.529 15 H 0.066 0.934 16 C 0.014 3.986 17 N -0.921 5.921 18 Si 0.957 3.043 19 H -0.266 1.266 20 H -0.290 1.290 21 H -0.274 1.274 22 C 0.127 3.873 23 H 0.243 0.757 24 H 0.109 0.891 25 H 0.107 0.893 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.165 0.835 29 H 0.161 0.839 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.261 0.739 35 H 0.057 0.943 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.328 -1.369 10.663 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.224 4.224 3 C -0.041 4.041 4 C -0.155 4.155 5 C -0.733 4.733 6 S 2.720 3.280 7 O -0.985 6.985 8 O -0.982 6.982 9 N -0.854 5.854 10 C -0.003 4.003 11 C -0.141 4.141 12 C 0.013 3.987 13 H 0.019 0.981 14 C -0.567 4.567 15 H 0.084 0.916 16 C -0.186 4.186 17 N -0.559 5.559 18 Si 0.783 3.217 19 H -0.190 1.190 20 H -0.216 1.216 21 H -0.199 1.199 22 C 0.003 3.997 23 H 0.259 0.741 24 H 0.127 0.873 25 H 0.125 0.875 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.183 0.817 29 H 0.179 0.821 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.718 -1.541 9.714 19.397 hybrid contribution 1.005 0.449 0.321 1.147 sum -15.713 -1.092 10.035 18.676 Atomic orbital electron populations 1.25746 0.97031 1.00442 0.99282 1.23682 0.95593 1.01284 1.01799 1.18747 0.84051 1.05549 0.95794 1.21362 0.90285 1.04300 0.99504 1.30440 1.05469 1.14934 1.22495 1.04511 0.71588 0.72739 0.79187 1.93524 1.83509 1.50216 1.71230 1.93521 1.83583 1.42828 1.78240 1.58435 1.22737 1.14451 1.89785 1.21803 0.91033 0.86343 1.01094 1.22463 0.92889 0.98362 1.00431 1.19831 0.90999 0.93395 0.94439 0.98132 1.21334 0.91451 1.10172 1.33747 0.91630 1.25763 1.01115 0.96570 0.95106 1.70082 1.19042 1.27743 1.39076 0.85628 0.77971 0.79038 0.79079 1.19032 1.21579 1.19888 1.22124 0.90725 0.85894 1.01005 0.74089 0.87323 0.87526 0.90247 0.89986 0.81731 0.82125 0.89209 0.93110 0.91975 0.93090 0.93047 0.92403 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.23 19.25 74.32 1.43 -1.80 16 2 C -0.22 -3.94 13.34 31.13 0.42 -3.53 16 3 C 0.00 -0.05 5.70 28.79 0.16 0.11 16 4 C -0.12 -1.94 5.18 30.60 0.16 -1.78 16 5 C -0.60 -10.09 6.18 71.98 0.44 -9.64 16 6 S 2.62 77.64 5.65 -56.49 -0.32 77.32 16 7 O -0.99 -36.45 17.28 -127.65 -2.21 -38.65 16 8 O -0.99 -34.85 17.60 -127.65 -2.25 -37.10 16 9 N -1.02 -34.64 3.62 -506.42 -1.83 -36.47 16 10 C 0.12 4.22 6.89 86.73 0.60 4.82 16 11 C -0.10 -4.37 5.92 31.87 0.19 -4.19 16 12 C 0.03 1.63 2.85 -10.06 -0.03 1.60 16 13 H 0.00 0.02 8.14 -2.39 -0.02 0.01 16 14 C -0.53 -27.46 8.50 25.60 0.22 -27.25 16 15 H 0.07 3.24 7.77 -2.91 -0.02 3.21 16 16 C 0.01 0.73 5.37 84.65 0.45 1.18 16 17 N -0.92 -52.11 12.62 21.45 0.27 -51.84 16 18 Si 0.96 41.84 29.54 68.60 2.03 43.86 16 19 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 20 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 C 0.13 4.97 6.51 86.86 0.57 5.53 16 23 H 0.24 1.96 7.80 -4.42 -0.03 1.93 16 24 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.16 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.16 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.09 2.34 8.14 -2.39 -0.02 2.33 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 2.59 8.03 -2.39 -0.02 2.57 16 33 H 0.05 2.42 7.86 -2.39 -0.02 2.40 16 34 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 35 H 0.06 2.33 7.67 -2.39 -0.02 2.31 16 36 H 0.08 2.72 8.02 -2.39 -0.02 2.70 16 Total: -1.00 -70.96 322.07 1.34 -69.61 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 1.04 Total: 8.19 kcal Atomic # 6 Polarization: -39.54 SS G_CDS: 4.61 Total: -34.93 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -1.56 Total: -88.31 kcal Atomic # 8 Polarization: -71.30 SS G_CDS: -4.45 Total: -75.75 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 16 Polarization: 77.64 SS G_CDS: -0.32 Total: 77.32 kcal Total: -70.96 1.34 -69.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711174194.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.345 kcal (2) G-P(sol) polarization free energy of solvation -70.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds