Wall clock time and date at job start Mon Mar 30 2020 04:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 119.70815 * 2 1 4 4 C 1.53004 * 60.47466 * 247.69841 * 3 2 1 5 5 H 1.08995 * 119.71251 * 112.30593 * 4 3 2 6 6 C 1.51314 * 118.60678 * 269.57555 * 4 3 2 7 7 O 1.21224 * 125.39601 * 242.65587 * 6 4 3 8 8 N 1.33878 * 109.20958 * 62.67129 * 6 4 3 9 9 C 1.40214 * 122.76491 * 180.02562 * 8 6 4 10 10 C 1.39240 * 119.94269 * 112.85386 * 9 8 6 11 11 C 1.38502 * 120.42924 * 179.97438 * 10 9 8 12 12 C 1.37676 * 120.31744 * 0.02562 * 11 10 9 13 13 C 1.40727 * 119.87929 * 0.02562 * 12 11 10 14 14 C 1.41410 * 120.21338 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99615 * 149.30603 * 14 13 12 16 16 C 1.39932 * 119.99998 * 329.31023 * 14 13 12 17 17 N 1.30827 * 120.00039 * 347.30397 * 16 14 13 18 18 Si 1.86798 * 120.00061 * 167.30824 * 16 14 13 19 19 H 1.48503 * 109.47163 * 89.99315 * 18 16 14 20 20 H 1.48493 * 109.47280 * 210.00147 * 18 16 14 21 21 H 1.48507 * 109.47105 * 330.00084 * 18 16 14 22 22 C 1.38200 * 119.93764 * 292.57926 * 9 8 6 23 23 C 1.33877 * 114.47400 * 359.97438 * 8 6 4 24 24 O 1.21226 * 125.39763 * 179.97438 * 23 8 6 25 25 H 1.08996 * 109.47015 * 10.23339 * 1 2 3 26 26 H 1.09005 * 109.46936 * 130.22958 * 1 2 3 27 27 H 1.08999 * 109.47282 * 250.22953 * 1 2 3 28 28 H 1.09006 * 117.43924 * 140.07973 * 3 2 1 29 29 H 1.08990 * 117.44770 * 355.31987 * 3 2 1 30 30 H 1.07996 * 119.78606 * 0.02562 * 10 9 8 31 31 H 1.08005 * 119.83852 * 180.02562 * 11 10 9 32 32 H 1.08005 * 120.05663 * 180.02562 * 12 11 10 33 33 H 0.96999 * 119.99778 * 179.97438 * 17 16 14 34 34 H 1.07999 * 120.16171 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.2883 1.3289 0.0000 4 6 2.3534 0.4236 -1.2318 5 1 1.8859 0.7438 -2.1628 6 6 3.4576 -0.6076 -1.3154 7 8 4.3272 -0.6383 -2.1594 8 7 3.3218 -1.4809 -0.3098 9 6 4.1979 -2.5585 -0.1171 10 6 5.0320 -2.5854 0.9975 11 6 5.9009 -3.6451 1.1981 12 6 5.9496 -4.6842 0.2962 13 6 5.1132 -4.6700 -0.8355 14 6 5.1578 -5.7332 -1.7667 15 1 4.2691 -6.0079 -2.3156 16 6 6.3533 -6.4295 -1.9769 17 7 7.4788 -5.9525 -1.5108 18 14 6.3421 -8.0401 -2.9231 19 1 6.5371 -7.7658 -4.3695 20 1 7.4403 -8.9105 -2.4318 21 1 5.0397 -8.7243 -2.7204 22 6 4.2280 -3.5949 -1.0309 23 6 2.2812 -1.2399 0.4974 24 8 1.9747 -1.9030 1.4648 25 1 -0.3633 1.0113 -0.1826 26 1 -0.3633 -0.6638 -0.7846 27 1 -0.3634 -0.3476 0.9671 28 1 3.1817 1.3975 0.6208 29 1 1.7000 2.2430 -0.0789 30 1 5.0006 -1.7750 1.7108 31 1 6.5434 -3.6564 2.0662 32 1 6.6285 -5.5086 0.4569 33 1 8.3074 -6.4354 -1.6562 34 1 3.5779 -3.5771 -1.8931 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713514351.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:59 Heat of formation + Delta-G solvation = -3.273108 kcal Electronic energy + Delta-G solvation = -20146.673143 eV Core-core repulsion = 17010.847304 eV Total energy + Delta-G solvation = -3135.825839 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.23093 -38.19948 -37.87277 -36.72616 -34.99500 -33.36643 -29.99182 -29.48713 -28.72484 -25.45864 -24.80873 -24.22171 -21.67565 -20.97729 -20.53081 -19.04070 -17.78156 -16.43139 -16.03480 -15.91046 -15.48744 -14.95448 -14.73258 -14.42417 -13.99329 -13.75993 -13.41538 -13.17820 -13.08573 -12.73117 -12.42586 -12.37694 -11.78375 -11.34331 -11.21154 -11.03084 -10.88075 -10.79538 -10.55277 -10.14050 -9.98059 -9.80994 -9.75413 -9.33463 -9.15532 -7.61989 -7.43354 -6.78772 -4.45982 1.52532 2.50244 2.72629 2.75585 2.98916 3.06425 3.09831 3.14109 3.24292 3.92036 3.98045 4.13800 4.25106 4.42318 4.57011 5.00066 5.24486 5.31669 5.49530 5.50902 5.54870 5.59680 5.88016 5.93905 6.16430 6.23540 6.75189 6.87081 6.91794 7.12580 7.21509 7.34849 7.58597 7.62376 7.81426 7.90279 8.01793 8.27536 8.50949 8.79077 8.81797 10.18296 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.029682 B = 0.004951 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.093271 B = 5654.403331 C = 5828.113540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.168 4.168 3 C -0.087 4.087 4 C -0.198 4.198 5 H 0.156 0.844 6 C 0.547 3.453 7 O -0.458 6.458 8 N -0.513 5.513 9 C 0.119 3.881 10 C -0.213 4.213 11 C -0.098 4.098 12 C -0.143 4.143 13 C 0.118 3.882 14 C -0.463 4.463 15 H 0.079 0.921 16 C 0.076 3.924 17 N -0.799 5.799 18 Si 0.912 3.088 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.261 1.261 22 C -0.194 4.194 23 C 0.552 3.448 24 O -0.463 6.463 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.129 0.871 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.282 0.718 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.275 10.720 1.636 14.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.172 4.172 3 C -0.125 4.125 4 C -0.220 4.220 5 H 0.174 0.826 6 C 0.335 3.665 7 O -0.328 6.328 8 N -0.250 5.250 9 C 0.032 3.968 10 C -0.234 4.234 11 C -0.117 4.117 12 C -0.162 4.162 13 C 0.115 3.885 14 C -0.493 4.493 15 H 0.097 0.903 16 C -0.142 4.142 17 N -0.424 5.424 18 Si 0.737 3.263 19 H -0.195 1.195 20 H -0.200 1.200 21 H -0.185 1.185 22 C -0.215 4.215 23 C 0.339 3.661 24 O -0.333 6.333 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.123 0.877 29 H 0.147 0.853 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.139 0.861 33 H 0.093 0.907 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.685 10.239 1.689 13.533 hybrid contribution 0.186 -0.686 -0.584 0.920 sum -8.499 9.553 1.105 12.834 Atomic orbital electron populations 1.21029 0.87788 1.02803 1.03648 1.23062 0.97157 0.94692 1.02245 1.23116 1.01476 0.92460 0.95399 1.23591 0.99387 1.02699 0.96279 0.82613 1.19828 0.84743 0.81634 0.80341 1.90775 1.34369 1.72734 1.34889 1.44098 1.26890 1.26770 1.27274 1.17348 0.93727 0.87247 0.98458 1.20211 1.02378 1.01500 0.99272 1.20553 0.97880 0.94535 0.98753 1.21404 1.02335 0.98824 0.93655 1.17438 0.89296 0.90444 0.91288 1.19504 0.96529 1.12954 1.20317 0.90300 1.25875 0.94842 0.98462 0.95002 1.69784 0.99090 1.36536 1.37011 0.86246 0.79111 0.81100 0.79892 1.19450 1.20043 1.18467 1.20931 1.06511 0.94339 0.99680 1.20187 0.79370 0.84668 0.81838 1.90724 1.66528 1.51433 1.24579 0.90888 0.91370 0.90410 0.87664 0.85273 0.89091 0.88292 0.86102 0.90749 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.23 37.16 0.38 -0.47 16 2 C -0.17 -2.01 3.08 -153.79 -0.47 -2.49 16 3 C -0.09 -0.80 9.82 -26.73 -0.26 -1.06 16 4 C -0.20 -2.38 7.02 -90.89 -0.64 -3.02 16 5 H 0.16 1.43 8.14 -51.93 -0.42 1.01 16 6 C 0.55 10.03 7.76 -11.09 -0.09 9.95 16 7 O -0.46 -10.11 17.59 5.61 0.10 -10.01 16 8 N -0.51 -10.32 2.61 -58.73 -0.15 -10.47 16 9 C 0.12 2.85 4.94 -83.66 -0.41 2.44 16 10 C -0.21 -5.04 9.79 -39.11 -0.38 -5.42 16 11 C -0.10 -2.34 10.02 -39.69 -0.40 -2.74 16 12 C -0.14 -3.73 8.64 -38.85 -0.34 -4.07 16 13 C 0.12 3.23 5.51 -106.85 -0.59 2.64 16 14 C -0.46 -12.45 9.04 -37.74 -0.34 -12.79 16 15 H 0.08 2.04 7.88 -52.48 -0.41 1.63 16 16 C 0.08 1.91 5.20 -17.35 -0.09 1.82 16 17 N -0.80 -20.81 11.08 55.55 0.62 -20.19 16 18 Si 0.91 18.83 29.58 -169.99 -5.03 13.80 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 22 C -0.19 -5.03 9.53 -38.69 -0.37 -5.40 16 23 C 0.55 9.87 7.61 -10.10 -0.08 9.79 16 24 O -0.46 -9.63 17.59 5.60 0.10 -9.53 16 25 H 0.07 0.43 8.05 -51.93 -0.42 0.02 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 1.97 8.06 -52.49 -0.42 1.55 16 31 H 0.10 2.06 8.06 -52.48 -0.42 1.63 16 32 H 0.12 3.19 6.44 -52.48 -0.34 2.86 16 33 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 34 H 0.10 2.45 8.06 -52.49 -0.42 2.02 16 LS Contribution 303.52 15.07 4.57 4.57 Total: -1.00 -31.86 303.52 -7.56 -39.42 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -3.69 Total: 3.23 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -4.08 Total: -10.82 kcal Atomic # 7 Polarization: -31.13 SS G_CDS: 0.46 Total: -30.66 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: 0.20 Total: -19.54 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.86 -7.56 -39.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713514351.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.142 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds