Wall clock time and date at job start Mon Mar 30 2020 04:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 119.70815 * 2 1 4 4 C 1.53004 * 60.47466 * 247.69841 * 3 2 1 5 5 H 1.08995 * 119.71251 * 112.30593 * 4 3 2 6 6 C 1.51314 * 118.60678 * 269.57555 * 4 3 2 7 7 O 1.21224 * 125.39601 * 242.65587 * 6 4 3 8 8 N 1.33878 * 109.20958 * 62.67129 * 6 4 3 9 9 C 1.40214 * 122.76491 * 180.02562 * 8 6 4 10 10 C 1.39240 * 119.94269 * 112.85386 * 9 8 6 11 11 C 1.38502 * 120.42924 * 179.97438 * 10 9 8 12 12 C 1.37676 * 120.31744 * 0.02562 * 11 10 9 13 13 C 1.40727 * 119.87929 * 0.02562 * 12 11 10 14 14 C 1.41410 * 120.21338 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99615 * 149.30603 * 14 13 12 16 16 C 1.39932 * 119.99998 * 329.31023 * 14 13 12 17 17 N 1.30827 * 120.00039 * 347.30397 * 16 14 13 18 18 Si 1.86798 * 120.00061 * 167.30824 * 16 14 13 19 19 H 1.48503 * 109.47163 * 89.99315 * 18 16 14 20 20 H 1.48493 * 109.47280 * 210.00147 * 18 16 14 21 21 H 1.48507 * 109.47105 * 330.00084 * 18 16 14 22 22 C 1.38200 * 119.93764 * 292.57926 * 9 8 6 23 23 C 1.33877 * 114.47400 * 359.97438 * 8 6 4 24 24 O 1.21226 * 125.39763 * 179.97438 * 23 8 6 25 25 H 1.08996 * 109.47015 * 10.23339 * 1 2 3 26 26 H 1.09005 * 109.46936 * 130.22958 * 1 2 3 27 27 H 1.08999 * 109.47282 * 250.22953 * 1 2 3 28 28 H 1.09006 * 117.43924 * 140.07973 * 3 2 1 29 29 H 1.08990 * 117.44770 * 355.31987 * 3 2 1 30 30 H 1.07996 * 119.78606 * 0.02562 * 10 9 8 31 31 H 1.08005 * 119.83852 * 180.02562 * 11 10 9 32 32 H 1.08005 * 120.05663 * 180.02562 * 12 11 10 33 33 H 0.96999 * 119.99778 * 179.97438 * 17 16 14 34 34 H 1.07999 * 120.16171 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.2883 1.3289 0.0000 4 6 2.3534 0.4236 -1.2318 5 1 1.8859 0.7438 -2.1628 6 6 3.4576 -0.6076 -1.3154 7 8 4.3272 -0.6383 -2.1594 8 7 3.3218 -1.4809 -0.3098 9 6 4.1979 -2.5585 -0.1171 10 6 5.0320 -2.5854 0.9975 11 6 5.9009 -3.6451 1.1981 12 6 5.9496 -4.6842 0.2962 13 6 5.1132 -4.6700 -0.8355 14 6 5.1578 -5.7332 -1.7667 15 1 4.2691 -6.0079 -2.3156 16 6 6.3533 -6.4295 -1.9769 17 7 7.4788 -5.9525 -1.5108 18 14 6.3421 -8.0401 -2.9231 19 1 6.5371 -7.7658 -4.3695 20 1 7.4403 -8.9105 -2.4318 21 1 5.0397 -8.7243 -2.7204 22 6 4.2280 -3.5949 -1.0309 23 6 2.2812 -1.2399 0.4974 24 8 1.9747 -1.9030 1.4648 25 1 -0.3633 1.0113 -0.1826 26 1 -0.3633 -0.6638 -0.7846 27 1 -0.3634 -0.3476 0.9671 28 1 3.1817 1.3975 0.6208 29 1 1.7000 2.2430 -0.0789 30 1 5.0006 -1.7750 1.7108 31 1 6.5434 -3.6564 2.0662 32 1 6.6285 -5.5086 0.4569 33 1 8.3074 -6.4354 -1.6562 34 1 3.5779 -3.5771 -1.8931 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713514351.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:59 Heat of formation + Delta-G solvation = -22.708532 kcal Electronic energy + Delta-G solvation = -20147.515926 eV Core-core repulsion = 17010.847304 eV Total energy + Delta-G solvation = -3136.668622 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.58264 -39.71845 -39.60814 -38.09897 -36.62615 -35.22335 -31.98165 -31.01264 -29.77366 -27.42126 -26.09307 -25.59932 -23.14901 -22.80054 -21.98039 -20.41575 -19.47737 -18.04371 -17.56957 -17.32053 -17.25157 -16.65084 -16.46151 -15.60714 -15.33681 -15.21742 -14.96512 -14.87607 -14.32016 -13.99046 -13.71983 -13.61096 -13.22431 -13.05608 -12.92019 -12.75261 -12.48505 -12.21611 -11.86156 -11.79932 -11.68193 -11.28727 -11.13831 -10.99529 -10.91360 -9.60888 -9.40037 -8.71856 -6.51938 0.18130 0.61627 0.78519 1.34472 1.36628 1.43745 1.51111 1.60076 2.17379 2.23254 2.59731 3.01365 3.04326 3.14505 3.49899 3.56319 4.11260 4.20146 4.23767 4.36146 4.48718 4.72290 4.76257 4.83970 4.87285 4.89339 4.95327 5.03310 5.18400 5.27813 5.40723 5.56661 5.75557 5.85718 5.89703 6.09555 6.21010 6.45879 6.67384 6.79628 6.81840 8.27907 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.029682 B = 0.004951 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.093271 B = 5654.403331 C = 5828.113540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.163 4.163 3 C -0.050 4.050 4 C -0.191 4.191 5 H 0.195 0.805 6 C 0.534 3.466 7 O -0.510 6.510 8 N -0.528 5.528 9 C 0.118 3.882 10 C -0.222 4.222 11 C -0.095 4.095 12 C -0.166 4.166 13 C 0.091 3.909 14 C -0.500 4.500 15 H 0.075 0.925 16 C 0.036 3.964 17 N -0.828 5.828 18 Si 0.989 3.011 19 H -0.263 1.263 20 H -0.261 1.261 21 H -0.258 1.258 22 C -0.221 4.221 23 C 0.539 3.461 24 O -0.504 6.504 25 H 0.118 0.882 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.189 0.811 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.112 0.888 33 H 0.292 0.708 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.753 12.928 1.583 16.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.167 4.167 3 C -0.086 4.086 4 C -0.212 4.212 5 H 0.212 0.788 6 C 0.326 3.674 7 O -0.383 6.383 8 N -0.266 5.266 9 C 0.030 3.970 10 C -0.242 4.242 11 C -0.113 4.113 12 C -0.185 4.185 13 C 0.088 3.912 14 C -0.529 4.529 15 H 0.093 0.907 16 C -0.179 4.179 17 N -0.453 5.453 18 Si 0.809 3.191 19 H -0.188 1.188 20 H -0.185 1.185 21 H -0.182 1.182 22 C -0.242 4.242 23 C 0.330 3.670 24 O -0.376 6.376 25 H 0.137 0.863 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.118 0.882 29 H 0.206 0.794 30 H 0.129 0.871 31 H 0.149 0.851 32 H 0.130 0.870 33 H 0.102 0.898 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.188 12.488 1.655 16.201 hybrid contribution 0.659 -1.301 -0.497 1.541 sum -9.529 11.187 1.158 14.741 Atomic orbital electron populations 1.21160 0.84908 1.05574 1.03216 1.23148 0.98501 0.93366 1.01682 1.23591 1.00937 0.92523 0.91578 1.23697 0.96194 1.02462 0.98800 0.78835 1.21047 0.85425 0.82274 0.78651 1.90738 1.36902 1.74118 1.36513 1.44522 1.27197 1.26138 1.28716 1.17531 0.93866 0.87961 0.97605 1.20524 1.02096 1.02010 0.99573 1.20899 0.97776 0.93629 0.99040 1.21388 1.02975 0.99739 0.94393 1.17820 0.90097 0.91176 0.92073 1.19771 0.97464 1.14347 1.21352 0.90667 1.26787 0.93763 1.01704 0.95673 1.69830 0.99855 1.37989 1.37653 0.85101 0.79480 0.76133 0.78366 1.18758 1.18453 1.18205 1.20973 1.07272 0.95468 1.00454 1.21391 0.78702 0.86213 0.80739 1.90688 1.67349 1.53319 1.26239 0.86308 0.91682 0.91201 0.88224 0.79386 0.87080 0.85141 0.86984 0.89762 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.25 10.23 71.98 0.74 -0.51 16 2 C -0.16 -3.38 3.08 -51.72 -0.16 -3.53 16 3 C -0.05 -0.63 9.82 30.60 0.30 -0.33 16 4 C -0.19 -3.91 7.02 -10.97 -0.08 -3.99 16 5 H 0.19 2.56 8.14 -2.39 -0.02 2.54 16 6 C 0.53 19.62 7.76 87.99 0.68 20.30 16 7 O -0.51 -23.22 17.59 -2.86 -0.05 -23.27 16 8 N -0.53 -21.68 2.61 -577.55 -1.51 -23.18 16 9 C 0.12 5.94 4.94 38.03 0.19 6.12 16 10 C -0.22 -10.75 9.79 22.57 0.22 -10.52 16 11 C -0.09 -4.63 10.02 22.20 0.22 -4.40 16 12 C -0.17 -9.07 8.64 22.75 0.20 -8.88 16 13 C 0.09 5.28 5.51 -21.31 -0.12 5.16 16 14 C -0.50 -28.33 9.04 23.46 0.21 -28.12 16 15 H 0.08 4.13 7.88 -2.91 -0.02 4.11 16 16 C 0.04 1.85 5.20 85.25 0.44 2.29 16 17 N -0.83 -44.33 11.08 21.82 0.24 -44.09 16 18 Si 0.99 39.16 29.58 68.60 2.03 41.19 16 19 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 20 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 21 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 22 C -0.22 -12.23 9.53 22.84 0.22 -12.02 16 23 C 0.54 19.13 7.61 88.63 0.67 19.80 16 24 O -0.50 -21.32 17.59 -2.86 -0.05 -21.37 16 25 H 0.12 0.59 8.05 -2.39 -0.02 0.57 16 26 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.19 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 31 H 0.13 5.39 8.06 -2.91 -0.02 5.37 16 32 H 0.11 6.22 6.44 -2.91 -0.02 6.20 16 33 H 0.29 13.99 8.30 -92.71 -0.77 13.22 16 34 H 0.09 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -77.04 303.52 5.53 -71.52 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 1.12 Total: 17.83 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 3.74 Total: -18.62 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: -1.26 Total: -67.27 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -0.10 Total: -44.64 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -77.04 5.53 -71.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713514351.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.807 kcal (2) G-P(sol) polarization free energy of solvation -77.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds