Wall clock time and date at job start Mon Mar 30 2020 04:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 120.11051 * 2 1 4 4 C 1.52992 * 60.53245 * 247.87999 * 3 2 1 5 5 H 1.08999 * 120.11066 * 112.13002 * 4 3 2 6 6 C 1.51320 * 118.60422 * 270.52049 * 4 3 2 7 7 O 1.21225 * 125.39853 * 242.63895 * 6 4 3 8 8 N 1.33876 * 109.20420 * 62.67662 * 6 4 3 9 9 C 1.39611 * 122.76006 * 179.97438 * 8 6 4 10 10 C 1.39404 * 119.82312 * 112.47586 * 9 8 6 11 11 C 1.36411 * 120.17262 * 179.76142 * 10 9 8 12 12 C 1.40850 * 119.82248 * 0.52918 * 11 10 9 13 13 C 1.41171 * 120.17255 * 179.69995 * 12 11 10 14 14 H 1.08003 * 119.99942 * 208.43145 * 13 12 11 15 15 C 1.39915 * 120.00161 * 28.42931 * 13 12 11 16 16 N 1.30855 * 120.00259 * 13.35854 * 15 13 12 17 17 Si 1.86803 * 120.00213 * 193.35568 * 15 13 12 18 18 H 1.48506 * 109.46641 * 90.00295 * 17 15 13 19 19 H 1.48496 * 109.47199 * 209.99703 * 17 15 13 20 20 H 1.48496 * 109.47235 * 330.00411 * 17 15 13 21 21 C 1.40854 * 119.65392 * 359.72390 * 12 11 10 22 22 C 1.36408 * 119.82344 * 359.97438 * 21 12 11 23 23 C 1.33879 * 114.47647 * 0.02562 * 8 6 4 24 24 O 1.21219 * 125.39367 * 180.02562 * 23 8 6 25 25 H 1.09007 * 109.47428 * 246.71987 * 1 2 3 26 26 H 1.09004 * 109.47423 * 6.71151 * 1 2 3 27 27 H 1.08995 * 109.47829 * 126.71592 * 1 2 3 28 28 H 1.09004 * 117.44321 * 355.52620 * 3 2 1 29 29 H 1.09005 * 117.44770 * 140.23375 * 3 2 1 30 30 H 1.07999 * 119.91387 * 0.02562 * 10 9 8 31 31 H 1.07997 * 120.08997 * 180.28304 * 11 10 9 32 32 H 0.96999 * 120.01101 * 180.02562 * 16 15 13 33 33 H 1.08007 * 120.08704 * 179.97438 * 21 12 11 34 34 H 1.08004 * 119.90961 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.2975 1.3235 0.0000 4 6 2.3538 0.4208 -1.2340 5 1 1.8860 0.7386 -2.1658 6 6 3.4379 -0.6320 -1.3125 7 8 4.3128 -0.6777 -2.1503 8 7 3.2770 -1.5053 -0.3107 9 6 4.1257 -2.5966 -0.1163 10 6 4.9569 -2.6379 1.0021 11 6 5.7854 -3.7030 1.2017 12 6 5.8078 -4.7576 0.2683 13 6 6.6670 -5.8605 0.4642 14 1 7.0399 -6.4122 -0.3861 15 6 7.0355 -6.2387 1.7599 16 7 6.3932 -5.7525 2.7911 17 14 8.4443 -7.4380 2.0177 18 1 9.7184 -6.6854 2.1424 19 1 8.2080 -8.2200 3.2578 20 1 8.5265 -8.3618 0.8580 21 6 4.9687 -4.7058 -0.8619 22 6 4.1413 -3.6368 -1.0441 23 6 2.2347 -1.2467 0.4887 24 8 1.9081 -1.9060 1.4520 25 1 -0.3634 -0.4062 0.9440 26 1 -0.3634 1.0206 -0.1201 27 1 -0.3634 -0.6143 -0.8237 28 1 1.7152 2.2419 -0.0755 29 1 3.1927 1.3851 0.6188 30 1 4.9417 -1.8265 1.7147 31 1 6.4254 -3.7357 2.0709 32 1 6.6488 -6.0143 3.6894 33 1 4.9805 -5.5105 -1.5823 34 1 3.4977 -3.5955 -1.9105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713531923.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:02 Heat of formation + Delta-G solvation = -3.684080 kcal Electronic energy + Delta-G solvation = -20092.587456 eV Core-core repulsion = 16956.743796 eV Total energy + Delta-G solvation = -3135.843660 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.21014 -38.13379 -37.88444 -36.67574 -34.98713 -33.35840 -29.85254 -29.53839 -28.97949 -26.00513 -24.75120 -23.53634 -21.63605 -21.01054 -20.53191 -18.85363 -17.46679 -17.13583 -16.19425 -15.83514 -15.39221 -15.24453 -14.43533 -14.10869 -13.94830 -13.69853 -13.39409 -13.08259 -12.93128 -12.63167 -12.34485 -12.25920 -11.99855 -11.60738 -11.25666 -11.08542 -10.92274 -10.74395 -10.55965 -10.12200 -9.91979 -9.75342 -9.71718 -9.37415 -9.00768 -7.70938 -7.42627 -6.87763 -4.51634 1.57735 2.47112 2.89082 2.96800 3.01506 3.03284 3.05772 3.12385 3.27528 3.84557 4.02746 4.22693 4.31051 4.47245 4.53362 5.06378 5.27534 5.34672 5.51873 5.52930 5.59509 5.63027 5.92848 6.02376 6.14100 6.20519 6.80084 6.90546 6.99157 7.10294 7.30777 7.44829 7.57274 7.69383 7.85051 7.89004 8.09323 8.33190 8.48277 8.72628 8.81010 10.06343 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.036758 B = 0.004647 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.549878 B = 6024.594704 C = 6351.309077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.175 4.175 3 C -0.083 4.083 4 C -0.199 4.199 5 H 0.154 0.846 6 C 0.544 3.456 7 O -0.469 6.469 8 N -0.493 5.493 9 C -0.048 4.048 10 C -0.072 4.072 11 C -0.156 4.156 12 C 0.122 3.878 13 C -0.452 4.452 14 H 0.083 0.917 15 C 0.073 3.927 16 N -0.787 5.787 17 Si 0.915 3.085 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.261 1.261 21 C -0.218 4.218 22 C -0.060 4.060 23 C 0.548 3.452 24 O -0.462 6.462 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.128 0.872 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.284 0.716 33 H 0.101 0.899 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.619 10.752 -3.018 13.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.179 4.179 3 C -0.120 4.120 4 C -0.220 4.220 5 H 0.172 0.828 6 C 0.332 3.668 7 O -0.340 6.340 8 N -0.229 5.229 9 C -0.137 4.137 10 C -0.092 4.092 11 C -0.176 4.176 12 C 0.119 3.881 13 C -0.481 4.481 14 H 0.101 0.899 15 C -0.146 4.146 16 N -0.411 5.411 17 Si 0.739 3.261 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.185 1.185 21 C -0.238 4.238 22 C -0.080 4.080 23 C 0.336 3.664 24 O -0.332 6.332 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.146 0.854 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.142 0.858 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.317 10.281 -2.680 12.900 hybrid contribution 0.495 -0.591 0.142 0.784 sum -6.822 9.690 -2.538 12.119 Atomic orbital electron populations 1.21047 0.88080 1.02718 1.03565 1.22716 0.97382 0.95088 1.02685 1.23074 1.01287 0.92408 0.95264 1.23635 0.99815 1.02577 0.96006 0.82798 1.19887 0.84369 0.81882 0.80619 1.90721 1.33808 1.73778 1.35704 1.43609 1.26682 1.25373 1.27237 1.16960 1.03485 0.90676 1.02537 1.20287 0.95640 0.98209 0.95020 1.20928 1.01773 0.92807 1.02062 1.17727 0.88879 0.91488 0.90004 1.19665 1.24059 1.11352 0.92985 0.89911 1.25998 0.96295 0.96702 0.95619 1.69816 1.34225 1.36978 1.00074 0.86198 0.81005 0.80113 0.78793 1.19114 1.20136 1.18456 1.20645 1.01695 0.99053 1.02361 1.20146 0.98372 0.92992 0.96440 1.19791 0.79409 0.85015 0.82200 1.90730 1.65280 1.52649 1.24576 0.90413 0.91061 0.91508 0.85367 0.87665 0.89263 0.85823 0.90491 0.88063 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 10.16 37.15 0.38 -0.53 16 2 C -0.17 -2.17 3.00 -154.72 -0.46 -2.64 16 3 C -0.08 -0.78 9.87 -26.74 -0.26 -1.05 16 4 C -0.20 -2.38 7.07 -90.83 -0.64 -3.03 16 5 H 0.15 1.40 8.14 -51.93 -0.42 0.97 16 6 C 0.54 9.77 7.75 -11.08 -0.09 9.69 16 7 O -0.47 -9.91 17.59 5.61 0.10 -9.81 16 8 N -0.49 -9.90 2.59 -59.26 -0.15 -10.05 16 9 C -0.05 -1.15 4.95 -83.45 -0.41 -1.56 16 10 C -0.07 -1.78 9.72 -39.81 -0.39 -2.17 16 11 C -0.16 -4.11 8.61 -39.25 -0.34 -4.45 16 12 C 0.12 3.26 5.54 -106.81 -0.59 2.67 16 13 C -0.45 -11.78 9.04 -37.84 -0.34 -12.12 16 14 H 0.08 2.05 7.88 -52.48 -0.41 1.64 16 15 C 0.07 1.79 5.20 -17.34 -0.09 1.70 16 16 N -0.79 -20.14 10.95 55.55 0.61 -19.53 16 17 Si 0.91 18.28 29.58 -169.99 -5.03 13.25 16 18 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 19 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 C -0.22 -5.44 9.74 -39.25 -0.38 -5.82 16 22 C -0.06 -1.44 9.71 -39.81 -0.39 -1.83 16 23 C 0.55 10.08 7.48 -11.08 -0.08 9.99 16 24 O -0.46 -10.09 17.59 5.61 0.10 -9.99 16 25 H 0.08 0.80 8.14 -51.92 -0.42 0.37 16 26 H 0.07 0.46 8.05 -51.93 -0.42 0.04 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 31 H 0.12 3.31 6.28 -52.49 -0.33 2.98 16 32 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 33 H 0.10 2.34 8.06 -52.48 -0.42 1.92 16 34 H 0.09 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 302.85 15.07 4.56 4.56 Total: -1.00 -31.24 302.85 -7.58 -38.82 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -3.68 Total: 3.90 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -4.09 Total: -11.16 kcal Atomic # 7 Polarization: -30.04 SS G_CDS: 0.46 Total: -29.58 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: 0.20 Total: -19.80 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.24 -7.58 -38.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713531923.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.141 kcal (2) G-P(sol) polarization free energy of solvation -31.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds