Wall clock time and date at job start Mon Mar 30 2020 04:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 120.11051 * 2 1 4 4 C 1.52992 * 60.53245 * 247.87999 * 3 2 1 5 5 H 1.08999 * 120.11066 * 112.13002 * 4 3 2 6 6 C 1.51320 * 118.60422 * 270.52049 * 4 3 2 7 7 O 1.21225 * 125.39853 * 242.63895 * 6 4 3 8 8 N 1.33876 * 109.20420 * 62.67662 * 6 4 3 9 9 C 1.39611 * 122.76006 * 179.97438 * 8 6 4 10 10 C 1.39404 * 119.82312 * 112.47586 * 9 8 6 11 11 C 1.36411 * 120.17262 * 179.76142 * 10 9 8 12 12 C 1.40850 * 119.82248 * 0.52918 * 11 10 9 13 13 C 1.41171 * 120.17255 * 179.69995 * 12 11 10 14 14 H 1.08003 * 119.99942 * 208.43145 * 13 12 11 15 15 C 1.39915 * 120.00161 * 28.42931 * 13 12 11 16 16 N 1.30855 * 120.00259 * 13.35854 * 15 13 12 17 17 Si 1.86803 * 120.00213 * 193.35568 * 15 13 12 18 18 H 1.48506 * 109.46641 * 90.00295 * 17 15 13 19 19 H 1.48496 * 109.47199 * 209.99703 * 17 15 13 20 20 H 1.48496 * 109.47235 * 330.00411 * 17 15 13 21 21 C 1.40854 * 119.65392 * 359.72390 * 12 11 10 22 22 C 1.36408 * 119.82344 * 359.97438 * 21 12 11 23 23 C 1.33879 * 114.47647 * 0.02562 * 8 6 4 24 24 O 1.21219 * 125.39367 * 180.02562 * 23 8 6 25 25 H 1.09007 * 109.47428 * 246.71987 * 1 2 3 26 26 H 1.09004 * 109.47423 * 6.71151 * 1 2 3 27 27 H 1.08995 * 109.47829 * 126.71592 * 1 2 3 28 28 H 1.09004 * 117.44321 * 355.52620 * 3 2 1 29 29 H 1.09005 * 117.44770 * 140.23375 * 3 2 1 30 30 H 1.07999 * 119.91387 * 0.02562 * 10 9 8 31 31 H 1.07997 * 120.08997 * 180.28304 * 11 10 9 32 32 H 0.96999 * 120.01101 * 180.02562 * 16 15 13 33 33 H 1.08007 * 120.08704 * 179.97438 * 21 12 11 34 34 H 1.08004 * 119.90961 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.2975 1.3235 0.0000 4 6 2.3538 0.4208 -1.2340 5 1 1.8860 0.7386 -2.1658 6 6 3.4379 -0.6320 -1.3125 7 8 4.3128 -0.6777 -2.1503 8 7 3.2770 -1.5053 -0.3107 9 6 4.1257 -2.5966 -0.1163 10 6 4.9569 -2.6379 1.0021 11 6 5.7854 -3.7030 1.2017 12 6 5.8078 -4.7576 0.2683 13 6 6.6670 -5.8605 0.4642 14 1 7.0399 -6.4122 -0.3861 15 6 7.0355 -6.2387 1.7599 16 7 6.3932 -5.7525 2.7911 17 14 8.4443 -7.4380 2.0177 18 1 9.7184 -6.6854 2.1424 19 1 8.2080 -8.2200 3.2578 20 1 8.5265 -8.3618 0.8580 21 6 4.9687 -4.7058 -0.8619 22 6 4.1413 -3.6368 -1.0441 23 6 2.2347 -1.2467 0.4887 24 8 1.9081 -1.9060 1.4520 25 1 -0.3634 -0.4062 0.9440 26 1 -0.3634 1.0206 -0.1201 27 1 -0.3634 -0.6143 -0.8237 28 1 1.7152 2.2419 -0.0755 29 1 3.1927 1.3851 0.6188 30 1 4.9417 -1.8265 1.7147 31 1 6.4254 -3.7357 2.0709 32 1 6.6488 -6.0143 3.6894 33 1 4.9805 -5.5105 -1.5823 34 1 3.4977 -3.5955 -1.9105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713531923.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:02 Heat of formation + Delta-G solvation = -22.341806 kcal Electronic energy + Delta-G solvation = -20093.396516 eV Core-core repulsion = 16956.743796 eV Total energy + Delta-G solvation = -3136.652719 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.56613 -39.69394 -39.61564 -38.04538 -36.63084 -35.15409 -31.77407 -31.36600 -29.89180 -27.72093 -26.03769 -24.99643 -23.31203 -22.73310 -21.96669 -20.15295 -19.42406 -18.74665 -17.68350 -17.23135 -17.08151 -16.69558 -15.93874 -15.60987 -15.29019 -15.18407 -14.89698 -14.72542 -14.20095 -14.00984 -13.83053 -13.55469 -13.52586 -13.05361 -12.90150 -12.80387 -12.52633 -12.00893 -11.92145 -11.79435 -11.59649 -11.31333 -11.09688 -10.91537 -10.78231 -9.71224 -9.38883 -8.75378 -6.51268 0.23065 0.59487 0.94853 1.36583 1.43785 1.51612 1.53417 1.69313 2.15931 2.25792 2.57650 3.05976 3.15923 3.19440 3.53667 3.58917 4.10096 4.15399 4.19178 4.43820 4.50563 4.72969 4.83706 4.84948 4.89666 4.95512 4.96442 5.04952 5.18492 5.27492 5.46407 5.64757 5.72026 5.90183 5.96545 6.11317 6.30435 6.46238 6.71767 6.75646 6.91117 8.21944 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.036758 B = 0.004647 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.549878 B = 6024.594704 C = 6351.309077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.176 4.176 3 C -0.050 4.050 4 C -0.185 4.185 5 H 0.197 0.803 6 C 0.534 3.466 7 O -0.511 6.511 8 N -0.509 5.509 9 C -0.049 4.049 10 C -0.083 4.083 11 C -0.175 4.175 12 C 0.092 3.908 13 C -0.483 4.483 14 H 0.087 0.913 15 C 0.032 3.968 16 N -0.821 5.821 17 Si 0.993 3.007 18 H -0.260 1.260 19 H -0.267 1.267 20 H -0.254 1.254 21 C -0.229 4.229 22 C -0.069 4.069 23 C 0.536 3.464 24 O -0.511 6.511 25 H 0.062 0.938 26 H 0.116 0.884 27 H 0.068 0.932 28 H 0.187 0.813 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.293 0.707 33 H 0.114 0.886 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.850 12.884 -3.692 16.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.179 4.179 3 C -0.086 4.086 4 C -0.205 4.205 5 H 0.214 0.786 6 C 0.325 3.675 7 O -0.384 6.384 8 N -0.245 5.245 9 C -0.138 4.138 10 C -0.102 4.102 11 C -0.195 4.195 12 C 0.090 3.910 13 C -0.512 4.512 14 H 0.105 0.895 15 C -0.184 4.184 16 N -0.446 5.446 17 Si 0.813 3.187 18 H -0.184 1.184 19 H -0.191 1.191 20 H -0.178 1.178 21 C -0.249 4.249 22 C -0.089 4.089 23 C 0.327 3.673 24 O -0.384 6.384 25 H 0.081 0.919 26 H 0.134 0.866 27 H 0.087 0.913 28 H 0.205 0.795 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.132 0.868 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.578 12.448 -3.369 15.489 hybrid contribution 0.826 -1.187 0.352 1.489 sum -7.752 11.261 -3.017 14.000 Atomic orbital electron populations 1.21150 0.85314 1.05524 1.02938 1.22764 0.98802 0.93684 1.02670 1.23535 1.00656 0.92571 0.91875 1.23756 0.96552 1.01886 0.98356 0.78648 1.20978 0.85034 0.82516 0.78938 1.90694 1.35899 1.74838 1.36963 1.44018 1.26919 1.24924 1.28659 1.17133 1.03191 0.91939 1.01530 1.20444 0.95835 0.98131 0.95813 1.20904 1.02691 0.93733 1.02171 1.18071 0.89954 0.92171 0.90829 1.19951 1.25201 1.11839 0.94177 0.89465 1.26940 0.98466 0.98340 0.94636 1.69874 1.35617 1.38264 1.00839 0.85036 0.77102 0.77555 0.79037 1.18422 1.19095 1.17780 1.20876 1.01742 0.99925 1.02385 1.20395 0.98439 0.92889 0.97135 1.20939 0.78761 0.86597 0.80961 1.90694 1.66434 1.54761 1.26546 0.91850 0.86566 0.91337 0.79531 0.88533 0.88515 0.87072 0.89643 0.86781 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.35 10.16 71.98 0.73 -0.62 16 2 C -0.18 -3.76 3.00 -52.32 -0.16 -3.92 16 3 C -0.05 -0.67 9.87 30.59 0.30 -0.37 16 4 C -0.19 -3.67 7.07 -10.93 -0.08 -3.74 16 5 H 0.20 2.35 8.14 -2.39 -0.02 2.33 16 6 C 0.53 18.66 7.75 87.99 0.68 19.35 16 7 O -0.51 -21.55 17.59 -2.86 -0.05 -21.60 16 8 N -0.51 -20.60 2.59 -579.25 -1.50 -22.10 16 9 C -0.05 -2.40 4.95 38.46 0.19 -2.21 16 10 C -0.08 -4.31 9.72 22.12 0.22 -4.10 16 11 C -0.18 -9.79 8.61 22.48 0.19 -9.59 16 12 C 0.09 5.19 5.54 -21.28 -0.12 5.08 16 13 C -0.48 -26.16 9.04 23.40 0.21 -25.95 16 14 H 0.09 4.46 7.88 -2.91 -0.02 4.44 16 15 C 0.03 1.62 5.20 85.24 0.44 2.06 16 16 N -0.82 -43.48 10.95 21.82 0.24 -43.24 16 17 Si 0.99 37.75 29.58 68.60 2.03 39.78 16 18 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 19 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 20 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 21 C -0.23 -11.97 9.74 22.48 0.22 -11.75 16 22 C -0.07 -3.44 9.71 22.12 0.21 -3.22 16 23 C 0.54 19.60 7.48 87.99 0.66 20.26 16 24 O -0.51 -22.97 17.59 -2.84 -0.05 -23.02 16 25 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.12 0.70 8.05 -2.38 -0.02 0.68 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.19 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.10 4.73 8.06 -2.91 -0.02 4.70 16 31 H 0.11 6.35 6.28 -2.91 -0.02 6.33 16 32 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 33 H 0.11 5.46 8.06 -2.91 -0.02 5.44 16 34 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -74.76 302.85 5.50 -69.26 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 1.12 Total: 19.66 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 3.71 Total: -18.73 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: -1.26 Total: -65.34 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -0.10 Total: -44.62 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -74.76 5.50 -69.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713531923.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.913 kcal (2) G-P(sol) polarization free energy of solvation -74.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds