Wall clock time and date at job start Mon Mar 30 2020 04:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.55422 * 119.91357 * 2 1 4 4 C 1.53004 * 60.00298 * 112.00435 * 3 2 1 5 5 H 1.08997 * 119.71307 * 247.32853 * 4 3 2 6 6 C 1.51311 * 118.60439 * 90.05240 * 4 3 2 7 7 O 1.21223 * 125.39726 * 116.11327 * 6 4 3 8 8 N 1.33884 * 109.20667 * 296.37881 * 6 4 3 9 9 C 1.39604 * 122.75920 * 179.75698 * 8 6 4 10 10 C 1.39393 * 119.82967 * 292.46647 * 9 8 6 11 11 C 1.36409 * 120.17908 * 179.76514 * 10 9 8 12 12 C 1.40853 * 119.81461 * 0.51163 * 11 10 9 13 13 C 1.41184 * 120.16640 * 179.76315 * 12 11 10 14 14 H 1.07999 * 120.00388 * 28.39907 * 13 12 11 15 15 C 1.39921 * 119.99789 * 208.40234 * 13 12 11 16 16 N 1.30853 * 120.00123 * 13.36672 * 15 13 12 17 17 Si 1.86802 * 119.99572 * 193.37389 * 15 13 12 18 18 H 1.48496 * 109.47408 * 90.00125 * 17 15 13 19 19 H 1.48505 * 109.46663 * 209.99630 * 17 15 13 20 20 H 1.48495 * 109.47573 * 329.99338 * 17 15 13 21 21 C 1.40843 * 119.66168 * 359.74568 * 12 11 10 22 22 C 1.36404 * 119.82227 * 0.02562 * 21 12 11 23 23 C 1.33879 * 114.47350 * 359.56650 * 8 6 4 24 24 O 1.21218 * 125.39744 * 180.17481 * 23 8 6 25 25 H 1.08997 * 109.47271 * 349.56533 * 1 2 3 26 26 H 1.09008 * 109.47016 * 109.56125 * 1 2 3 27 27 H 1.08997 * 109.47611 * 229.56462 * 1 2 3 28 28 H 1.09005 * 117.13236 * 4.41812 * 3 2 1 29 29 H 1.09002 * 118.05100 * 219.18525 * 3 2 1 30 30 H 1.08002 * 119.90892 * 0.03065 * 10 9 8 31 31 H 1.07996 * 120.09427 * 180.28238 * 11 10 9 32 32 H 0.97001 * 119.99686 * 180.02562 * 16 15 13 33 33 H 1.08001 * 120.09091 * 179.97438 * 21 12 11 34 34 H 1.07998 * 119.91332 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.3050 1.3472 0.0000 4 6 2.3538 0.4365 1.2286 5 1 1.8860 0.7587 2.1588 6 6 3.4453 -0.6080 1.3131 7 8 4.3231 -0.6403 2.1484 8 7 3.2912 -1.4877 0.3156 9 6 4.1510 -2.5708 0.1240 10 6 5.4726 -2.3476 -0.2589 11 6 6.3202 -3.4004 -0.4434 12 6 5.8536 -4.7162 -0.2565 13 6 6.7231 -5.8115 -0.4503 14 1 7.7843 -5.6939 -0.2882 15 6 6.2098 -7.0495 -0.8525 16 7 4.9830 -7.1351 -1.2997 17 14 7.2759 -8.5800 -0.7509 18 1 7.0998 -9.2186 0.5781 19 1 6.8745 -9.5343 -1.8156 20 1 8.7007 -8.2041 -0.9347 21 6 4.5154 -4.9336 0.1252 22 6 3.6815 -3.8701 0.3103 23 6 2.2425 -1.2454 -0.4805 24 8 1.9181 -1.9148 -1.4377 25 1 -0.3633 1.0106 0.1861 26 1 -0.3633 -0.3441 -0.9684 27 1 -0.3634 -0.6665 0.7821 28 1 1.7145 2.2604 0.0747 29 1 3.2069 1.4196 -0.6078 30 1 5.8277 -1.3382 -0.4056 31 1 7.3451 -3.2257 -0.7356 32 1 4.6272 -7.9934 -1.5782 33 1 4.1502 -5.9396 0.2700 34 1 2.6552 -4.0351 0.6034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713627864.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:05 Heat of formation + Delta-G solvation = -2.980709 kcal Electronic energy + Delta-G solvation = -20086.740827 eV Core-core repulsion = 16950.927667 eV Total energy + Delta-G solvation = -3135.813159 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.15336 -38.12476 -37.85193 -36.61639 -34.97288 -33.35115 -29.85562 -29.51970 -28.99834 -25.99944 -24.71219 -23.54585 -21.70890 -20.90098 -20.53389 -18.87215 -17.46516 -17.14355 -16.17395 -15.81119 -15.50731 -15.15649 -14.40444 -14.10344 -13.92114 -13.68481 -13.40278 -13.08777 -12.91384 -12.66217 -12.35005 -12.25617 -11.99253 -11.63739 -11.24643 -11.08910 -10.89594 -10.72020 -10.53787 -10.13462 -9.91884 -9.75559 -9.70115 -9.37365 -9.00612 -7.70867 -7.42517 -6.87746 -4.51528 1.57031 2.47162 2.88519 2.96999 3.00407 3.03347 3.05724 3.12397 3.27384 3.84607 4.00124 4.21920 4.32919 4.44870 4.53944 5.07302 5.27497 5.34231 5.52387 5.53314 5.59417 5.62556 5.93021 6.02139 6.14609 6.20364 6.80234 6.90573 6.99161 7.10354 7.30935 7.44918 7.57240 7.69632 7.85199 7.89161 8.09355 8.33353 8.48415 8.72673 8.81064 10.06365 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.036854 B = 0.004674 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.572844 B = 5989.195648 C = 6405.346949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.177 4.177 3 C -0.084 4.084 4 C -0.196 4.196 5 H 0.154 0.846 6 C 0.544 3.456 7 O -0.470 6.470 8 N -0.493 5.493 9 C -0.048 4.048 10 C -0.060 4.060 11 C -0.217 4.217 12 C 0.122 3.878 13 C -0.452 4.452 14 H 0.083 0.917 15 C 0.073 3.927 16 N -0.786 5.786 17 Si 0.915 3.085 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.261 1.261 21 C -0.156 4.156 22 C -0.072 4.072 23 C 0.549 3.451 24 O -0.462 6.462 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.128 0.872 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.284 0.716 33 H 0.124 0.876 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.121 11.282 2.410 13.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.181 4.181 3 C -0.121 4.121 4 C -0.217 4.217 5 H 0.171 0.829 6 C 0.332 3.668 7 O -0.340 6.340 8 N -0.229 5.229 9 C -0.137 4.137 10 C -0.080 4.080 11 C -0.237 4.237 12 C 0.119 3.881 13 C -0.481 4.481 14 H 0.101 0.899 15 C -0.146 4.146 16 N -0.411 5.411 17 Si 0.739 3.261 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.185 1.185 21 C -0.176 4.176 22 C -0.091 4.091 23 C 0.337 3.663 24 O -0.332 6.332 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.146 0.854 29 H 0.124 0.876 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.142 0.858 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.970 10.664 2.230 12.933 hybrid contribution 0.331 -0.753 0.039 0.824 sum -6.639 9.911 2.269 12.143 Atomic orbital electron populations 1.21021 0.88058 1.02637 1.03568 1.23098 0.97174 0.94791 1.03031 1.23461 1.01178 0.91917 0.95551 1.23649 0.99601 1.02256 0.96236 0.82889 1.19906 0.84637 0.82126 0.80141 1.90720 1.34027 1.73719 1.35571 1.43608 1.26685 1.25936 1.26663 1.16961 0.90496 0.84655 1.21556 1.20134 0.92219 0.97508 0.98095 1.20638 0.98957 0.92594 1.11560 1.17728 0.92341 0.91798 0.86225 1.19668 0.95590 0.93608 1.39206 0.89911 1.26001 0.95388 1.00852 0.92379 1.69820 1.15378 1.27389 1.28492 0.86197 0.80888 0.80090 0.78928 1.19117 1.20136 1.18455 1.20930 0.94668 0.97531 1.04469 1.20295 0.97888 0.91442 0.99496 1.19762 0.79917 0.84958 0.81706 1.90729 1.65717 1.52024 1.24765 0.91077 0.90436 0.91519 0.85410 0.87598 0.89225 0.88054 0.90496 0.85833 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.17 37.15 0.38 -0.52 16 2 C -0.18 -2.20 3.08 -153.43 -0.47 -2.68 16 3 C -0.08 -0.78 10.02 -25.44 -0.25 -1.04 16 4 C -0.20 -2.35 6.98 -90.82 -0.63 -2.98 16 5 H 0.15 1.40 8.14 -51.93 -0.42 0.97 16 6 C 0.54 9.76 7.75 -11.08 -0.09 9.68 16 7 O -0.47 -9.91 17.59 5.61 0.10 -9.81 16 8 N -0.49 -9.90 2.59 -59.26 -0.15 -10.05 16 9 C -0.05 -1.15 4.95 -83.45 -0.41 -1.57 16 10 C -0.06 -1.44 9.72 -39.81 -0.39 -1.82 16 11 C -0.22 -5.43 9.74 -39.25 -0.38 -5.81 16 12 C 0.12 3.26 5.54 -106.80 -0.59 2.67 16 13 C -0.45 -11.79 9.04 -37.83 -0.34 -12.13 16 14 H 0.08 2.05 7.88 -52.49 -0.41 1.64 16 15 C 0.07 1.79 5.20 -17.34 -0.09 1.70 16 16 N -0.79 -20.15 10.95 55.55 0.61 -19.55 16 17 Si 0.91 18.29 29.58 -169.99 -5.03 13.26 16 18 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 19 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 C -0.16 -4.13 8.61 -39.26 -0.34 -4.47 16 22 C -0.07 -1.78 9.70 -39.81 -0.39 -2.17 16 23 C 0.55 10.10 7.50 -11.08 -0.08 10.02 16 24 O -0.46 -10.10 17.58 5.61 0.10 -10.01 16 25 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 26 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.13 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.09 1.95 8.06 -52.49 -0.42 1.52 16 31 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 32 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 33 H 0.12 3.32 6.28 -52.49 -0.33 2.99 16 34 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 LS Contribution 303.03 15.07 4.57 4.57 Total: -1.00 -31.27 303.03 -7.57 -38.84 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -3.68 Total: 3.87 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -4.08 Total: -11.12 kcal Atomic # 7 Polarization: -30.05 SS G_CDS: 0.46 Total: -29.60 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: 0.20 Total: -19.82 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.27 -7.57 -38.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713627864.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.861 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds