Wall clock time and date at job start Mon Mar 30 2020 04:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.55422 * 119.91357 * 2 1 4 4 C 1.53004 * 60.00298 * 112.00435 * 3 2 1 5 5 H 1.08997 * 119.71307 * 247.32853 * 4 3 2 6 6 C 1.51311 * 118.60439 * 90.05240 * 4 3 2 7 7 O 1.21223 * 125.39726 * 116.11327 * 6 4 3 8 8 N 1.33884 * 109.20667 * 296.37881 * 6 4 3 9 9 C 1.39604 * 122.75920 * 179.75698 * 8 6 4 10 10 C 1.39393 * 119.82967 * 292.46647 * 9 8 6 11 11 C 1.36409 * 120.17908 * 179.76514 * 10 9 8 12 12 C 1.40853 * 119.81461 * 0.51163 * 11 10 9 13 13 C 1.41184 * 120.16640 * 179.76315 * 12 11 10 14 14 H 1.07999 * 120.00388 * 28.39907 * 13 12 11 15 15 C 1.39921 * 119.99789 * 208.40234 * 13 12 11 16 16 N 1.30853 * 120.00123 * 13.36672 * 15 13 12 17 17 Si 1.86802 * 119.99572 * 193.37389 * 15 13 12 18 18 H 1.48496 * 109.47408 * 90.00125 * 17 15 13 19 19 H 1.48505 * 109.46663 * 209.99630 * 17 15 13 20 20 H 1.48495 * 109.47573 * 329.99338 * 17 15 13 21 21 C 1.40843 * 119.66168 * 359.74568 * 12 11 10 22 22 C 1.36404 * 119.82227 * 0.02562 * 21 12 11 23 23 C 1.33879 * 114.47350 * 359.56650 * 8 6 4 24 24 O 1.21218 * 125.39744 * 180.17481 * 23 8 6 25 25 H 1.08997 * 109.47271 * 349.56533 * 1 2 3 26 26 H 1.09008 * 109.47016 * 109.56125 * 1 2 3 27 27 H 1.08997 * 109.47611 * 229.56462 * 1 2 3 28 28 H 1.09005 * 117.13236 * 4.41812 * 3 2 1 29 29 H 1.09002 * 118.05100 * 219.18525 * 3 2 1 30 30 H 1.08002 * 119.90892 * 0.03065 * 10 9 8 31 31 H 1.07996 * 120.09427 * 180.28238 * 11 10 9 32 32 H 0.97001 * 119.99686 * 180.02562 * 16 15 13 33 33 H 1.08001 * 120.09091 * 179.97438 * 21 12 11 34 34 H 1.07998 * 119.91332 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.3050 1.3472 0.0000 4 6 2.3538 0.4365 1.2286 5 1 1.8860 0.7587 2.1588 6 6 3.4453 -0.6080 1.3131 7 8 4.3231 -0.6403 2.1484 8 7 3.2912 -1.4877 0.3156 9 6 4.1510 -2.5708 0.1240 10 6 5.4726 -2.3476 -0.2589 11 6 6.3202 -3.4004 -0.4434 12 6 5.8536 -4.7162 -0.2565 13 6 6.7231 -5.8115 -0.4503 14 1 7.7843 -5.6939 -0.2882 15 6 6.2098 -7.0495 -0.8525 16 7 4.9830 -7.1351 -1.2997 17 14 7.2759 -8.5800 -0.7509 18 1 7.0998 -9.2186 0.5781 19 1 6.8745 -9.5343 -1.8156 20 1 8.7007 -8.2041 -0.9347 21 6 4.5154 -4.9336 0.1252 22 6 3.6815 -3.8701 0.3103 23 6 2.2425 -1.2454 -0.4805 24 8 1.9181 -1.9148 -1.4377 25 1 -0.3633 1.0106 0.1861 26 1 -0.3633 -0.3441 -0.9684 27 1 -0.3634 -0.6665 0.7821 28 1 1.7145 2.2604 0.0747 29 1 3.2069 1.4196 -0.6078 30 1 5.8277 -1.3382 -0.4056 31 1 7.3451 -3.2257 -0.7356 32 1 4.6272 -7.9934 -1.5782 33 1 4.1502 -5.9396 0.2700 34 1 2.6552 -4.0351 0.6034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713627864.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:05 Heat of formation + Delta-G solvation = -21.689998 kcal Electronic energy + Delta-G solvation = -20087.552122 eV Core-core repulsion = 16950.927667 eV Total energy + Delta-G solvation = -3136.624455 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.51559 -39.66914 -39.61285 -37.96862 -36.61295 -35.14126 -31.76908 -31.36265 -29.90321 -27.71477 -25.99581 -24.99791 -23.40363 -22.62424 -21.94670 -20.17692 -19.42088 -18.75179 -17.58869 -17.35573 -17.09918 -16.62675 -15.93258 -15.60242 -15.27273 -15.14641 -14.90435 -14.71454 -14.19747 -13.99524 -13.85372 -13.55961 -13.53546 -13.04922 -12.90009 -12.80271 -12.52187 -12.01572 -11.93937 -11.74687 -11.58398 -11.31153 -11.09350 -10.91139 -10.76422 -9.71214 -9.38691 -8.75410 -6.51179 0.22983 0.59509 0.94927 1.36534 1.44024 1.51596 1.53341 1.69180 2.15845 2.25054 2.57831 3.03934 3.16721 3.18902 3.53091 3.58560 4.10372 4.16608 4.19637 4.43990 4.50889 4.73332 4.83806 4.85152 4.90627 4.94434 4.96543 5.05091 5.18444 5.27253 5.46444 5.64830 5.72098 5.90366 5.96916 6.11234 6.30826 6.46342 6.71952 6.75687 6.91344 8.21916 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.036854 B = 0.004674 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.572844 B = 5989.195648 C = 6405.346949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.181 4.181 3 C -0.046 4.046 4 C -0.183 4.183 5 H 0.194 0.806 6 C 0.534 3.466 7 O -0.511 6.511 8 N -0.509 5.509 9 C -0.048 4.048 10 C -0.068 4.068 11 C -0.229 4.229 12 C 0.092 3.908 13 C -0.483 4.483 14 H 0.088 0.912 15 C 0.032 3.968 16 N -0.821 5.821 17 Si 0.993 3.007 18 H -0.260 1.260 19 H -0.267 1.267 20 H -0.254 1.254 21 C -0.176 4.176 22 C -0.084 4.084 23 C 0.537 3.463 24 O -0.512 6.512 25 H 0.116 0.884 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.187 0.813 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.293 0.707 33 H 0.111 0.889 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.060 13.707 2.845 16.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.184 4.184 3 C -0.083 4.083 4 C -0.204 4.204 5 H 0.211 0.789 6 C 0.325 3.675 7 O -0.384 6.384 8 N -0.245 5.245 9 C -0.138 4.138 10 C -0.088 4.088 11 C -0.249 4.249 12 C 0.090 3.910 13 C -0.512 4.512 14 H 0.106 0.894 15 C -0.184 4.184 16 N -0.446 5.446 17 Si 0.813 3.187 18 H -0.185 1.185 19 H -0.191 1.191 20 H -0.177 1.177 21 C -0.195 4.195 22 C -0.103 4.103 23 C 0.328 3.672 24 O -0.385 6.385 25 H 0.135 0.865 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.204 0.796 29 H 0.118 0.882 30 H 0.128 0.872 31 H 0.133 0.867 32 H 0.103 0.897 33 H 0.128 0.872 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.931 13.133 2.672 15.573 hybrid contribution 0.586 -1.420 -0.110 1.540 sum -7.345 11.713 2.563 14.061 Atomic orbital electron populations 1.21119 0.85382 1.05377 1.02922 1.23154 0.98547 0.93595 1.03129 1.23938 1.00619 0.91816 0.91913 1.23758 0.96323 1.01697 0.98594 0.78881 1.20989 0.85315 0.82643 0.78541 1.90694 1.36143 1.74763 1.36813 1.44017 1.26904 1.25421 1.28175 1.17135 0.91306 0.85807 1.19537 1.20391 0.92355 0.98223 0.97787 1.20878 0.99906 0.92439 1.11649 1.18072 0.92778 0.93006 0.87171 1.19957 0.95867 0.94705 1.40640 0.89421 1.26946 0.96673 1.03703 0.91084 1.69881 1.17155 1.28710 1.28879 0.85034 0.78942 0.75535 0.79212 1.18465 1.19113 1.17725 1.20900 0.95321 0.97375 1.05949 1.20445 0.98020 0.92085 0.99768 1.20914 0.79193 0.86530 0.80547 1.90693 1.66827 1.54166 1.26814 0.86513 0.91677 0.91742 0.79597 0.88163 0.87248 0.86683 0.89667 0.87152 0.88737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.35 10.17 71.98 0.73 -0.62 16 2 C -0.18 -3.89 3.08 -51.48 -0.16 -4.04 16 3 C -0.05 -0.60 10.02 31.43 0.31 -0.29 16 4 C -0.18 -3.63 6.98 -10.93 -0.08 -3.70 16 5 H 0.19 2.37 8.14 -2.39 -0.02 2.35 16 6 C 0.53 18.64 7.75 87.99 0.68 19.32 16 7 O -0.51 -21.53 17.59 -2.85 -0.05 -21.58 16 8 N -0.51 -20.61 2.59 -579.25 -1.50 -22.11 16 9 C -0.05 -2.39 4.95 38.46 0.19 -2.20 16 10 C -0.07 -3.36 9.72 22.12 0.22 -3.15 16 11 C -0.23 -11.88 9.74 22.48 0.22 -11.66 16 12 C 0.09 5.19 5.54 -21.28 -0.12 5.07 16 13 C -0.48 -26.15 9.04 23.40 0.21 -25.94 16 14 H 0.09 4.48 7.88 -2.91 -0.02 4.46 16 15 C 0.03 1.60 5.20 85.25 0.44 2.05 16 16 N -0.82 -43.62 10.95 21.82 0.24 -43.38 16 17 Si 0.99 37.81 29.58 68.60 2.03 39.84 16 18 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 19 H -0.27 -9.65 7.11 99.48 0.71 -8.95 16 20 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 21 C -0.18 -9.86 8.61 22.48 0.19 -9.66 16 22 C -0.08 -4.40 9.70 22.12 0.21 -4.18 16 23 C 0.54 19.67 7.50 87.99 0.66 20.33 16 24 O -0.51 -23.06 17.58 -2.84 -0.05 -23.11 16 25 H 0.12 0.72 8.07 -2.39 -0.02 0.70 16 26 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.19 0.46 8.14 -2.38 -0.02 0.44 16 29 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 31 H 0.12 5.47 8.06 -2.91 -0.02 5.44 16 32 H 0.29 13.96 8.30 -92.71 -0.77 13.19 16 33 H 0.11 6.35 6.28 -2.91 -0.02 6.33 16 34 H 0.09 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -74.98 303.03 5.52 -69.46 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 1.12 Total: 19.56 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 3.72 Total: -18.68 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: -1.26 Total: -65.49 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -0.10 Total: -44.69 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -74.98 5.52 -69.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713627864.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.772 kcal (2) G-P(sol) polarization free energy of solvation -74.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds