Wall clock time and date at job start Mon Mar 30 2020 04:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34232 * 116.99871 * 2 1 4 4 O 1.20823 * 119.99599 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99716 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.46750 * 179.97438 * 5 3 2 7 7 C 1.36809 * 120.00094 * 95.40392 * 6 5 3 8 8 H 1.08000 * 120.00725 * 222.67600 * 7 6 5 9 9 C 1.39073 * 119.99900 * 42.68022 * 7 6 5 10 10 N 1.31354 * 120.00151 * 17.66456 * 9 7 6 11 11 Si 1.86805 * 120.00071 * 197.66708 * 9 7 6 12 12 H 1.48500 * 109.47131 * 59.99784 * 11 9 7 13 13 H 1.48500 * 109.47188 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47022 * 299.99658 * 11 9 7 15 15 C 1.34775 * 119.99915 * 275.12618 * 6 5 3 16 16 O 1.21652 * 119.99957 * 5.02087 * 15 6 5 17 17 C 1.47142 * 119.99880 * 185.01327 * 15 6 5 18 18 F 1.35093 * 120.00450 * 5.53445 * 17 15 6 19 19 C 1.33261 * 119.99994 * 185.53427 * 17 15 6 20 20 C 1.51409 * 136.31412 * 359.62508 * 19 17 15 21 21 C 1.53374 * 87.51802 * 206.06114 * 20 19 17 22 22 C 1.51401 * 136.31761 * 180.02562 * 19 17 15 23 23 H 1.08998 * 109.47137 * 60.00054 * 1 2 3 24 24 H 1.08999 * 109.46811 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46859 * 299.99666 * 1 2 3 26 26 H 1.08997 * 109.47556 * 59.99998 * 5 3 2 27 27 H 1.09002 * 109.47116 * 299.99442 * 5 3 2 28 28 H 0.96998 * 119.99673 * 180.02562 * 10 9 7 29 29 H 1.08993 * 113.56288 * 320.64383 * 20 19 17 30 30 H 1.09000 * 113.55548 * 91.37987 * 20 19 17 31 31 H 1.08999 * 113.96944 * 220.29842 * 21 20 19 32 32 H 1.09002 * 113.59784 * 88.79477 * 21 20 19 33 33 H 1.09007 * 113.55749 * 268.62250 * 22 19 17 34 34 H 1.09001 * 113.56295 * 39.35770 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2831 3.3044 1.1782 8 1 3.9344 4.3101 1.3612 9 6 5.0385 2.6444 2.1414 10 7 5.7485 1.5900 1.8104 11 14 5.0433 3.2572 3.9061 12 1 3.6608 3.2199 4.4468 13 1 5.9202 2.3868 4.7300 14 1 5.5525 4.6516 3.9444 15 6 4.0723 3.3552 -1.1638 16 8 3.7223 2.8277 -2.2026 17 6 4.5944 4.7308 -1.1767 18 9 5.0867 5.2772 -0.0435 19 6 4.5815 5.4378 -2.3063 20 6 4.1430 5.2077 -3.7370 21 6 5.1747 6.2637 -4.1528 22 6 5.0057 6.8271 -2.7333 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.9558 0.7809 -0.8908 27 1 3.9564 0.7806 0.8892 28 1 6.2751 1.1295 2.4824 29 1 4.3712 4.2084 -4.1074 30 1 3.1124 5.5057 -3.9300 31 1 4.8283 6.9362 -4.9376 32 1 6.1652 5.8528 -4.3482 33 1 4.2118 7.5696 -2.6508 34 1 5.9413 7.1554 -2.2807 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819299938.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:19 Heat of formation + Delta-G solvation = -127.267274 kcal Electronic energy + Delta-G solvation = -21477.822050 eV Core-core repulsion = 17905.850196 eV Total energy + Delta-G solvation = -3571.971854 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.105 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.55660 -41.61251 -40.38609 -39.25945 -37.50240 -36.71914 -33.66752 -31.45347 -30.14489 -28.00451 -26.84795 -26.63476 -24.18555 -22.47060 -21.43807 -20.20779 -19.03198 -18.77576 -18.28558 -17.44951 -17.23016 -17.04530 -16.61619 -16.46823 -16.21394 -15.88952 -15.34103 -15.04043 -14.45333 -14.21770 -14.14859 -13.49759 -13.33084 -13.18883 -13.02347 -12.95647 -12.92832 -12.68666 -12.52045 -12.12992 -11.96554 -11.80821 -11.62539 -11.42250 -11.13403 -10.57773 -9.88085 -9.53810 -8.45642 -6.23377 0.27878 1.20716 1.39833 1.43833 1.51927 1.63443 2.19011 2.34725 2.61458 2.99380 3.35885 3.57872 3.78785 3.90469 4.02085 4.25890 4.28840 4.30649 4.34308 4.51726 4.63260 4.70207 4.74138 4.79709 5.00719 5.07518 5.28768 5.29597 5.39315 5.40800 5.63361 5.69240 6.26031 6.76804 6.94990 7.24048 7.67649 8.59907 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.013888 B = 0.008516 C = 0.005793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.683465 B = 3287.310095 C = 4832.381375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.453 3.547 4 O -0.533 6.533 5 C 0.128 3.872 6 N -0.422 5.422 7 C -0.357 4.357 8 H 0.088 0.912 9 C 0.013 3.987 10 N -0.883 5.883 11 Si 0.981 3.019 12 H -0.270 1.270 13 H -0.268 1.268 14 H -0.265 1.265 15 C 0.494 3.506 16 O -0.601 6.601 17 C 0.025 3.975 18 F -0.132 7.132 19 C -0.162 4.162 20 C -0.085 4.085 21 C -0.116 4.116 22 C -0.086 4.086 23 H 0.056 0.944 24 H 0.140 0.860 25 H 0.058 0.942 26 H 0.101 0.899 27 H 0.134 0.866 28 H 0.281 0.719 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.078 3.090 -4.705 6.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.295 3.705 4 O -0.422 6.422 5 C 0.003 3.997 6 N -0.139 5.139 7 C -0.485 4.485 8 H 0.106 0.894 9 C -0.192 4.192 10 N -0.519 5.519 11 Si 0.803 3.197 12 H -0.196 1.196 13 H -0.193 1.193 14 H -0.190 1.190 15 C 0.286 3.714 16 O -0.488 6.488 17 C 0.003 3.997 18 F -0.110 7.110 19 C -0.166 4.166 20 C -0.122 4.122 21 C -0.153 4.153 22 C -0.122 4.122 23 H 0.075 0.925 24 H 0.158 0.842 25 H 0.077 0.923 26 H 0.119 0.881 27 H 0.152 0.848 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.130 0.870 32 H 0.104 0.896 33 H 0.137 0.863 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.330 2.943 -5.045 6.723 hybrid contribution -0.083 0.004 1.362 1.365 sum -3.413 2.947 -3.682 5.822 Atomic orbital electron populations 1.23544 0.75056 1.05797 1.02109 1.86508 1.25031 1.32486 1.84106 1.24906 0.93146 0.81433 0.70967 1.90558 1.67504 1.37615 1.46506 1.20926 0.85418 0.86904 1.06481 1.43064 1.55661 1.09366 1.05809 1.19716 1.33614 1.01910 0.93210 0.89397 1.26269 0.92501 0.96382 1.04057 1.69915 1.24906 1.20824 1.36236 0.85183 0.78594 0.78959 0.76919 1.19560 1.19286 1.18997 1.18808 0.81713 0.87183 0.83746 1.90597 1.55431 1.70167 1.32645 1.18449 1.05744 0.92952 0.82545 1.91448 1.85603 1.84928 1.49070 1.24018 0.97875 1.00383 0.94334 1.22054 1.00688 1.00787 0.88641 1.22666 0.99095 0.97375 0.96203 1.22252 1.02514 0.91273 0.96200 0.92543 0.84159 0.92332 0.88080 0.84823 0.90919 0.91747 0.87732 0.87033 0.89561 0.86277 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.56 113.37 1.20 1.99 16 2 O -0.37 -13.98 10.57 -51.43 -0.54 -14.52 16 3 C 0.45 21.19 7.99 71.24 0.57 21.76 16 4 O -0.53 -27.75 16.06 21.97 0.35 -27.40 16 5 C 0.13 6.32 5.43 85.63 0.46 6.78 16 6 N -0.42 -22.88 2.02 -643.68 -1.30 -24.18 16 7 C -0.36 -19.45 7.44 84.12 0.63 -18.83 16 8 H 0.09 4.90 6.53 -2.91 -0.02 4.88 16 9 C 0.01 0.65 4.95 84.96 0.42 1.07 16 10 N -0.88 -45.97 11.69 21.68 0.25 -45.72 16 11 Si 0.98 40.70 29.59 68.60 2.03 42.73 16 12 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 13 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 14 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 15 C 0.49 26.48 7.39 86.58 0.64 27.12 16 16 O -0.60 -32.70 14.86 -4.19 -0.06 -32.77 16 17 C 0.02 1.19 7.18 23.49 0.17 1.36 16 18 F -0.13 -6.45 14.00 44.97 0.63 -5.82 16 19 C -0.16 -6.19 6.89 -17.13 -0.12 -6.31 16 20 C -0.08 -2.68 7.05 30.06 0.21 -2.47 16 21 C -0.12 -2.62 8.17 30.94 0.25 -2.36 16 22 C -0.09 -2.25 7.95 30.15 0.24 -2.01 16 23 H 0.06 1.61 8.13 -2.39 -0.02 1.60 16 24 H 0.14 2.63 8.14 -2.39 -0.02 2.62 16 25 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16 26 H 0.10 4.87 7.66 -2.39 -0.02 4.85 16 27 H 0.13 6.66 5.86 -2.39 -0.01 6.65 16 28 H 0.28 13.55 8.31 -92.71 -0.77 12.78 16 29 H 0.06 2.32 7.41 -2.39 -0.02 2.31 16 30 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 31 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.12 2.59 8.14 -2.38 -0.02 2.57 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -68.60 301.99 7.16 -61.44 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 1.13 Total: 18.14 kcal Atomic # 6 Polarization: 23.44 SS G_CDS: 4.67 Total: 28.11 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -1.04 Total: -69.90 kcal Atomic # 8 Polarization: -74.44 SS G_CDS: -0.25 Total: -74.69 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 0.63 Total: -5.82 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -68.60 7.16 -61.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819299938.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.831 kcal (2) G-P(sol) polarization free energy of solvation -68.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds