Wall clock time and date at job start Mon Mar 30 2020 04:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39586 * 120.10249 * 144.15551 * 3 2 1 5 5 C 1.37929 * 119.78695 * 180.02562 * 4 3 2 6 6 C 1.38300 * 120.12919 * 0.02562 * 5 4 3 7 7 C 1.38457 * 120.46937 * 359.97438 * 6 5 4 8 8 C 1.37959 * 119.99963 * 359.96204 * 7 6 5 9 9 C 1.50755 * 108.95260 * 180.02562 * 8 7 6 10 10 N 1.46647 * 107.68130 * 0.03978 * 9 8 7 11 11 C 1.34771 * 126.58877 * 179.97438 * 10 9 8 12 12 O 1.21588 * 120.00056 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99851 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99629 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47090 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99916 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00404 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00380 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99848 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47281 * 90.00235 * 19 17 15 21 21 H 1.48504 * 109.47228 * 210.00233 * 19 17 15 22 22 H 1.48497 * 109.47216 * 330.00000 * 19 17 15 23 23 C 1.46638 * 106.82375 * 359.97438 * 10 9 8 24 24 H 1.08004 * 120.10823 * 359.97438 * 4 3 2 25 25 H 1.07997 * 119.93442 * 179.97438 * 5 4 3 26 26 H 1.07997 * 119.78795 * 179.97438 * 6 5 4 27 27 H 1.09002 * 109.81738 * 240.49946 * 9 8 7 28 28 H 1.09004 * 109.87542 * 119.61764 * 9 8 7 29 29 H 0.96997 * 120.00367 * 0.02562 * 13 11 10 30 30 H 1.09000 * 109.47344 * 300.00102 * 14 13 11 31 31 H 1.09003 * 109.47320 * 60.00605 * 14 13 11 32 32 H 0.96993 * 120.00267 * 179.97438 * 18 17 15 33 33 H 1.09002 * 109.81272 * 119.54837 * 23 10 9 34 34 H 1.09004 * 109.81012 * 240.38581 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2676 0.9798 -0.7072 5 6 4.6469 0.9740 -0.7031 6 6 5.3349 0.0010 -0.0013 7 6 4.6490 -0.9741 0.7028 8 6 3.2694 -0.9791 0.7083 9 6 2.7874 -2.1370 1.5448 10 7 3.9688 -2.8416 2.0531 11 6 3.9749 -3.9338 2.8425 12 8 2.9246 -4.4297 3.2024 13 7 5.1451 -4.4765 3.2331 14 6 5.1517 -5.6635 4.0918 15 6 6.5747 -6.0668 4.3804 16 1 7.3925 -5.4963 3.9653 17 6 6.8328 -7.1648 5.1734 18 7 8.0747 -7.5165 5.4256 19 14 5.4185 -8.1520 5.8907 20 1 5.0407 -9.2339 4.9461 21 1 5.8372 -8.7484 7.1846 22 1 4.2531 -7.2586 6.1116 23 6 5.1423 -2.1294 1.5373 24 1 2.7307 1.7392 -1.2564 25 1 5.1906 1.7302 -1.2498 26 1 6.4149 0.0014 -0.0023 27 1 2.1898 -2.8120 0.9321 28 1 2.1898 -1.7683 2.3786 29 1 5.9830 -4.0807 2.9464 30 1 4.6407 -5.4377 5.0277 31 1 4.6383 -6.4810 3.5855 32 1 8.2562 -8.2886 5.9838 33 1 5.7418 -1.7555 2.3673 34 1 5.7412 -2.8010 0.9222 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845155788.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:46 Heat of formation + Delta-G solvation = 41.375929 kcal Electronic energy + Delta-G solvation = -19200.893807 eV Core-core repulsion = 16099.296847 eV Total energy + Delta-G solvation = -3101.596960 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.01656 -39.12667 -36.94156 -36.11864 -34.36795 -32.49576 -32.16108 -31.25126 -28.46210 -27.65562 -25.55761 -23.35436 -22.13357 -21.63006 -19.86367 -18.69517 -18.10625 -16.50749 -16.35416 -16.27707 -15.76052 -15.45625 -14.56310 -14.48987 -14.33211 -13.82976 -13.50488 -13.35831 -13.18796 -13.10786 -13.05855 -12.65875 -12.51171 -12.37185 -12.06795 -11.66679 -11.60812 -11.01383 -10.78202 -9.99333 -9.77059 -9.49556 -9.44557 -9.28517 -8.80293 -8.52245 -8.05297 -6.22853 -4.25219 0.34389 0.79028 2.38022 2.58805 2.74889 3.27155 3.34287 3.42548 3.42820 3.50274 3.62614 3.83388 4.11500 4.32743 4.49500 4.60492 4.82015 4.92944 5.08277 5.12811 5.26505 5.28510 5.43905 5.44991 5.54735 5.75081 5.86299 5.90742 6.21680 6.29804 6.71444 7.07376 7.18441 7.18574 7.30869 7.46173 8.20907 8.57254 8.75280 9.06190 9.37607 10.88973 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.033017 B = 0.003765 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.833029 B = 7434.345742 C = 8256.385068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.251 3.749 3 C -0.007 4.007 4 C -0.067 4.067 5 C -0.117 4.117 6 C -0.064 4.064 7 C -0.098 4.098 8 C -0.054 4.054 9 C 0.165 3.835 10 N -0.640 5.640 11 C 0.722 3.278 12 O -0.591 6.591 13 N -0.716 5.716 14 C 0.237 3.763 15 C -0.543 4.543 16 H 0.080 0.920 17 C 0.079 3.921 18 N -0.892 5.892 19 Si 0.876 3.124 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.260 1.260 23 C 0.143 3.857 24 H 0.138 0.862 25 H 0.140 0.860 26 H 0.136 0.864 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.394 0.606 30 H 0.025 0.975 31 H 0.020 0.980 32 H 0.268 0.732 33 H 0.087 0.913 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.350 18.346 -13.212 22.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.064 4.064 3 C -0.010 4.010 4 C -0.088 4.088 5 C -0.135 4.135 6 C -0.083 4.083 7 C -0.099 4.099 8 C -0.058 4.058 9 C 0.041 3.959 10 N -0.381 5.381 11 C 0.424 3.576 12 O -0.470 6.470 13 N -0.368 5.368 14 C 0.115 3.885 15 C -0.581 4.581 16 H 0.098 0.902 17 C -0.125 4.125 18 N -0.529 5.529 19 Si 0.702 3.298 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.184 1.184 23 C 0.019 3.981 24 H 0.156 0.844 25 H 0.157 0.843 26 H 0.154 0.846 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.227 0.773 30 H 0.043 0.957 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.763 17.668 -12.718 22.519 hybrid contribution 0.303 -0.351 0.224 0.515 sum -5.460 17.316 -12.494 22.040 Atomic orbital electron populations 1.81269 1.11971 1.07438 1.07891 1.25668 0.92639 0.94053 0.94045 1.15319 0.84173 0.98337 1.03215 1.21110 0.94485 0.96439 0.96751 1.21015 0.93475 0.99115 0.99866 1.20752 1.00797 0.92402 0.94370 1.20290 0.93479 0.97125 0.98957 1.20385 0.94598 0.94844 0.95926 1.19969 0.88726 0.90497 0.96659 1.46967 1.06486 1.30237 1.54404 1.15389 0.85408 0.78397 0.78388 1.90904 1.31299 1.63485 1.61279 1.45400 1.05341 1.32382 1.53650 1.19428 0.98216 0.81809 0.89042 1.21058 0.90402 1.13888 1.32764 0.90239 1.24764 0.95800 0.96653 0.95301 1.69871 1.18548 1.26842 1.37681 0.86826 0.83008 0.80931 0.78998 1.19811 1.20895 1.18411 1.20298 0.89442 0.91330 0.97013 0.84433 0.84250 0.84572 0.89788 0.89774 0.77284 0.95702 0.96162 0.92223 0.89541 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.40 18.54 41.84 0.78 -4.63 16 2 C 0.25 2.71 15.10 -22.47 -0.34 2.37 16 3 C -0.01 -0.06 5.73 -106.89 -0.61 -0.67 16 4 C -0.07 -0.40 9.76 -39.19 -0.38 -0.78 16 5 C -0.12 -0.57 10.03 -39.67 -0.40 -0.96 16 6 C -0.06 -0.38 10.03 -39.48 -0.40 -0.78 16 7 C -0.10 -0.86 6.22 -104.59 -0.65 -1.51 16 8 C -0.05 -0.54 6.09 -104.12 -0.63 -1.18 16 9 C 0.17 2.14 6.62 -5.09 -0.03 2.11 16 10 N -0.64 -9.52 3.34 -181.85 -0.61 -10.13 16 11 C 0.72 14.30 8.52 -86.92 -0.74 13.56 16 12 O -0.59 -14.09 16.72 5.29 0.09 -14.01 16 13 N -0.72 -14.50 5.52 -66.41 -0.37 -14.87 16 14 C 0.24 5.80 4.50 -5.19 -0.02 5.78 16 15 C -0.54 -14.64 9.83 -34.44 -0.34 -14.98 16 16 H 0.08 2.21 7.84 -52.48 -0.41 1.80 16 17 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 18 N -0.89 -26.12 13.96 55.43 0.77 -25.34 16 19 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 23 C 0.14 1.50 6.22 -5.06 -0.03 1.47 16 24 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 25 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 26 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.39 6.91 7.37 -40.82 -0.30 6.61 16 30 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 31 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 305.43 15.07 4.60 4.60 Total: -1.00 -33.84 305.43 -7.69 -41.52 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -3.61 Total: -0.28 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -4.68 Total: 6.53 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.58 Total: -54.97 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.09 Total: -14.01 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.84 -7.69 -41.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845155788.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.898 kcal (2) G-P(sol) polarization free energy of solvation -33.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds