Wall clock time and date at job start Mon Mar 30 2020 04:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39586 * 120.10249 * 144.15551 * 3 2 1 5 5 C 1.37929 * 119.78695 * 180.02562 * 4 3 2 6 6 C 1.38300 * 120.12919 * 0.02562 * 5 4 3 7 7 C 1.38457 * 120.46937 * 359.97438 * 6 5 4 8 8 C 1.37959 * 119.99963 * 359.96204 * 7 6 5 9 9 C 1.50755 * 108.95260 * 180.02562 * 8 7 6 10 10 N 1.46647 * 107.68130 * 0.03978 * 9 8 7 11 11 C 1.34771 * 126.58877 * 179.97438 * 10 9 8 12 12 O 1.21588 * 120.00056 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99851 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99629 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47090 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99916 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00404 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00380 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99848 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47281 * 90.00235 * 19 17 15 21 21 H 1.48504 * 109.47228 * 210.00233 * 19 17 15 22 22 H 1.48497 * 109.47216 * 330.00000 * 19 17 15 23 23 C 1.46638 * 106.82375 * 359.97438 * 10 9 8 24 24 H 1.08004 * 120.10823 * 359.97438 * 4 3 2 25 25 H 1.07997 * 119.93442 * 179.97438 * 5 4 3 26 26 H 1.07997 * 119.78795 * 179.97438 * 6 5 4 27 27 H 1.09002 * 109.81738 * 240.49946 * 9 8 7 28 28 H 1.09004 * 109.87542 * 119.61764 * 9 8 7 29 29 H 0.96997 * 120.00367 * 0.02562 * 13 11 10 30 30 H 1.09000 * 109.47344 * 300.00102 * 14 13 11 31 31 H 1.09003 * 109.47320 * 60.00605 * 14 13 11 32 32 H 0.96993 * 120.00267 * 179.97438 * 18 17 15 33 33 H 1.09002 * 109.81272 * 119.54837 * 23 10 9 34 34 H 1.09004 * 109.81012 * 240.38581 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2676 0.9798 -0.7072 5 6 4.6469 0.9740 -0.7031 6 6 5.3349 0.0010 -0.0013 7 6 4.6490 -0.9741 0.7028 8 6 3.2694 -0.9791 0.7083 9 6 2.7874 -2.1370 1.5448 10 7 3.9688 -2.8416 2.0531 11 6 3.9749 -3.9338 2.8425 12 8 2.9246 -4.4297 3.2024 13 7 5.1451 -4.4765 3.2331 14 6 5.1517 -5.6635 4.0918 15 6 6.5747 -6.0668 4.3804 16 1 7.3925 -5.4963 3.9653 17 6 6.8328 -7.1648 5.1734 18 7 8.0747 -7.5165 5.4256 19 14 5.4185 -8.1520 5.8907 20 1 5.0407 -9.2339 4.9461 21 1 5.8372 -8.7484 7.1846 22 1 4.2531 -7.2586 6.1116 23 6 5.1423 -2.1294 1.5373 24 1 2.7307 1.7392 -1.2564 25 1 5.1906 1.7302 -1.2498 26 1 6.4149 0.0014 -0.0023 27 1 2.1898 -2.8120 0.9321 28 1 2.1898 -1.7683 2.3786 29 1 5.9830 -4.0807 2.9464 30 1 4.6407 -5.4377 5.0277 31 1 4.6383 -6.4810 3.5855 32 1 8.2562 -8.2886 5.9838 33 1 5.7418 -1.7555 2.3673 34 1 5.7412 -2.8010 0.9222 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845155788.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:45 Heat of formation + Delta-G solvation = 18.398935 kcal Electronic energy + Delta-G solvation = -19201.890165 eV Core-core repulsion = 16099.296847 eV Total energy + Delta-G solvation = -3102.593317 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.94116 -40.41303 -37.92869 -37.06862 -36.21266 -34.44810 -32.88279 -32.27979 -29.92484 -28.87386 -26.57447 -24.33647 -23.71511 -22.43709 -21.41895 -19.78665 -19.25717 -18.32349 -17.44869 -17.43884 -16.65227 -16.55209 -15.99856 -15.76447 -15.53027 -15.03464 -14.93163 -14.40081 -14.30665 -14.15420 -14.05087 -14.01458 -13.82646 -13.62125 -13.03033 -13.01920 -12.70135 -12.31564 -12.20526 -11.92663 -11.64844 -11.47770 -10.90720 -10.41708 -9.93857 -9.87456 -9.32683 -8.38489 -6.45027 -0.26617 0.22399 1.34012 1.35852 1.44030 1.49897 1.56067 1.89164 2.04348 2.29846 2.75153 2.78266 2.97230 3.02732 3.24533 3.34033 4.03428 4.20336 4.29451 4.37389 4.46317 4.52777 4.53149 4.71994 4.74187 4.84767 5.01056 5.04128 5.24992 5.28408 5.38210 5.45268 5.47307 5.82320 5.93325 6.18290 6.37271 6.56169 7.00032 7.18830 7.51201 8.75934 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.033017 B = 0.003765 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.833029 B = 7434.345742 C = 8256.385068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.272 3.728 3 C -0.019 4.019 4 C -0.054 4.054 5 C -0.100 4.100 6 C -0.051 4.051 7 C -0.103 4.103 8 C -0.070 4.070 9 C 0.162 3.838 10 N -0.636 5.636 11 C 0.722 3.278 12 O -0.638 6.638 13 N -0.712 5.712 14 C 0.250 3.750 15 C -0.543 4.543 16 H 0.064 0.936 17 C 0.031 3.969 18 N -0.929 5.929 19 Si 0.933 3.067 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.262 1.262 23 C 0.135 3.865 24 H 0.164 0.836 25 H 0.180 0.820 26 H 0.167 0.833 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.407 0.593 30 H 0.012 0.988 31 H 0.011 0.989 32 H 0.273 0.727 33 H 0.099 0.901 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.190 20.527 -14.833 25.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.042 4.042 3 C -0.023 4.023 4 C -0.074 4.074 5 C -0.117 4.117 6 C -0.069 4.069 7 C -0.104 4.104 8 C -0.073 4.073 9 C 0.039 3.961 10 N -0.374 5.374 11 C 0.423 3.577 12 O -0.520 6.520 13 N -0.366 5.366 14 C 0.126 3.874 15 C -0.581 4.581 16 H 0.082 0.918 17 C -0.170 4.170 18 N -0.567 5.567 19 Si 0.757 3.243 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.186 1.186 23 C 0.014 3.986 24 H 0.181 0.819 25 H 0.198 0.802 26 H 0.184 0.816 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.243 0.757 30 H 0.030 0.970 31 H 0.028 0.972 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.575 19.910 -14.384 24.984 hybrid contribution 0.043 -0.890 0.629 1.091 sum -4.532 19.019 -13.755 23.906 Atomic orbital electron populations 1.81279 1.13511 1.09243 1.09855 1.26065 0.93051 0.92564 0.92547 1.15450 0.82892 0.99389 1.04599 1.21496 0.95274 0.95448 0.95205 1.21497 0.92874 0.98907 0.98463 1.21148 1.02363 0.90917 0.92505 1.20203 0.92697 0.97573 0.99914 1.20054 0.95408 0.94696 0.97124 1.19982 0.88050 0.91490 0.96612 1.46796 1.09069 1.28834 1.52745 1.15401 0.84322 0.79255 0.78692 1.90861 1.32700 1.65314 1.63162 1.45054 1.06358 1.31650 1.53495 1.19022 0.96268 0.83029 0.89064 1.21225 0.91098 1.13585 1.32234 0.91812 1.25505 0.97918 0.97793 0.95799 1.69959 1.20289 1.27745 1.38750 0.85924 0.80003 0.79594 0.78777 1.19044 1.19783 1.18646 1.20562 0.87929 0.92141 0.98010 0.81859 0.80243 0.81568 0.91201 0.91205 0.75690 0.97042 0.97156 0.91805 0.88345 0.88324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.45 18.54 19.00 0.35 -12.10 16 2 C 0.27 5.79 15.10 88.33 1.33 7.13 16 3 C -0.02 -0.30 5.73 -21.34 -0.12 -0.42 16 4 C -0.05 -0.42 9.76 22.52 0.22 -0.20 16 5 C -0.10 -0.40 10.03 22.21 0.22 -0.17 16 6 C -0.05 -0.35 10.03 22.34 0.22 -0.13 16 7 C -0.10 -1.53 6.22 -19.84 -0.12 -1.65 16 8 C -0.07 -1.31 6.09 -19.54 -0.12 -1.43 16 9 C 0.16 4.35 6.62 85.62 0.57 4.91 16 10 N -0.64 -19.02 3.34 -847.51 -2.83 -21.84 16 11 C 0.72 29.12 8.52 179.06 1.52 30.65 16 12 O -0.64 -31.47 16.72 -3.99 -0.07 -31.54 16 13 N -0.71 -29.06 5.52 -482.29 -2.66 -31.72 16 14 C 0.25 12.36 4.50 85.63 0.38 12.75 16 15 C -0.54 -29.55 9.83 25.60 0.25 -29.30 16 16 H 0.06 3.59 7.84 -2.91 -0.02 3.57 16 17 C 0.03 1.70 5.47 84.65 0.46 2.17 16 18 N -0.93 -54.61 13.96 21.45 0.30 -54.31 16 19 Si 0.93 43.93 27.47 68.60 1.88 45.82 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.26 -12.36 6.54 99.48 0.65 -11.71 16 23 C 0.14 2.63 6.22 85.64 0.53 3.16 16 24 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16 25 H 0.18 -0.56 8.06 -2.91 -0.02 -0.59 16 26 H 0.17 0.24 8.06 -2.91 -0.02 0.22 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.41 14.16 7.37 -92.71 -0.68 13.47 16 30 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 31 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 32 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -75.98 305.43 2.74 -73.23 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 0.40 Total: 5.00 kcal Atomic # 6 Polarization: 22.10 SS G_CDS: 5.36 Total: 27.46 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -4.84 Total: -119.97 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.07 Total: -31.54 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.82 kcal Total: -75.98 2.74 -73.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845155788.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.632 kcal (2) G-P(sol) polarization free energy of solvation -75.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds