Wall clock time and date at job start Mon Mar 30 2020 04:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.09006 * 109.49638 * 99.76945 * 3 2 1 5 5 C 1.53045 * 109.49809 * 219.86402 * 3 2 1 6 6 C 1.53037 * 109.53730 * 181.31838 * 5 3 2 7 7 C 1.53625 * 109.24488 * 298.50779 * 6 5 3 8 8 N 1.46931 * 108.53646 * 54.85994 * 7 6 5 9 9 S 1.65606 * 120.62946 * 126.36833 * 8 7 6 10 10 O 1.42094 * 104.27817 * 153.64734 * 9 8 7 11 11 O 1.42106 * 104.27580 * 25.78966 * 9 8 7 12 12 C 1.81396 * 104.45103 * 269.71950 * 9 8 7 13 13 C 1.52997 * 109.47360 * 179.97438 * 12 9 8 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 9 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 C 1.46923 * 118.74107 * 306.09276 * 8 7 6 23 23 H 4.18778 * 15.03294 * 359.97438 * 4 2 1 24 24 H 1.08992 * 109.45755 * 301.33917 * 5 3 2 25 25 H 1.09003 * 109.45626 * 61.29664 * 5 3 2 26 26 H 1.09000 * 109.49856 * 58.59105 * 6 5 3 27 27 H 1.09001 * 109.49668 * 178.65501 * 6 5 3 28 28 H 1.08995 * 109.74167 * 295.12753 * 7 6 5 29 29 H 1.08997 * 109.66277 * 174.54788 * 7 6 5 30 30 H 1.09002 * 109.47134 * 59.99751 * 12 9 8 31 31 H 1.08998 * 109.46953 * 300.00489 * 12 9 8 32 32 H 1.09002 * 109.47153 * 59.99820 * 13 12 9 33 33 H 1.09001 * 109.46832 * 300.00011 * 13 12 9 34 34 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 35 35 H 1.08999 * 109.58750 * 173.64979 * 22 8 7 36 36 H 1.09000 * 109.58679 * 294.07127 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 0.1752 -1.0127 5 6 3.1563 1.1082 0.9247 6 6 4.6863 1.1311 0.9000 7 6 5.2212 -0.2135 1.4158 8 7 4.6212 -1.2918 0.6183 9 16 5.5759 -2.4203 -0.1285 10 8 4.7435 -3.5668 -0.2373 11 8 6.7625 -2.4479 0.6530 12 6 5.9094 -1.7180 -1.7674 13 6 6.7940 -2.6793 -2.5638 14 6 7.0705 -2.0961 -3.9256 15 1 6.6570 -1.1357 -4.1959 16 6 7.8523 -2.7881 -4.8262 17 7 8.0940 -2.2789 -6.0144 18 14 8.5681 -4.4489 -4.3584 19 1 7.6158 -5.5232 -4.7386 20 1 9.8542 -4.6524 -5.0722 21 1 8.8032 -4.4916 -2.8928 22 6 3.1580 -1.3535 0.5009 23 1 -1.0499 -0.0005 0.0001 24 1 2.7732 2.0703 0.5847 25 1 2.8123 0.9194 1.9417 26 1 5.0313 1.2953 -0.1209 27 1 5.0485 1.9355 1.5402 28 1 4.9500 -0.3399 2.4639 29 1 6.3058 -0.2414 1.3108 30 1 6.4209 -0.7620 -1.6558 31 1 4.9683 -1.5669 -2.2962 32 1 6.2829 -3.6355 -2.6754 33 1 7.7350 -2.8298 -2.0347 34 1 8.6437 -2.7660 -6.6481 35 1 2.8808 -2.1338 -0.2079 36 1 2.7220 -1.5711 1.4759 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848469875.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:10 Heat of formation + Delta-G solvation = -30.564071 kcal Electronic energy + Delta-G solvation = -19103.062602 eV Core-core repulsion = 16101.497290 eV Total energy + Delta-G solvation = -3001.565312 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.89644 -36.82411 -35.60654 -34.16839 -33.94744 -32.16344 -31.48737 -30.40197 -26.00777 -24.69439 -23.97429 -21.50819 -20.58577 -18.75963 -18.22975 -17.60230 -16.92742 -16.10836 -15.59233 -14.98702 -14.76906 -14.67548 -14.28339 -14.19901 -13.68529 -13.59568 -12.88454 -12.81190 -11.95352 -11.91652 -11.89376 -11.75355 -11.71912 -11.36558 -11.26334 -11.23908 -11.19534 -10.86089 -10.50751 -10.42161 -10.19824 -10.11297 -9.70954 -9.42154 -8.89432 -8.67020 -6.17355 -4.18629 0.59769 2.61067 2.69785 2.90093 3.26112 3.33519 3.37617 4.09336 4.16458 4.35247 4.44552 4.56751 4.68465 4.76923 4.98674 5.06180 5.14487 5.16530 5.32123 5.48311 5.50440 5.61930 5.62604 5.67888 5.82384 5.84309 5.86319 6.08807 6.12071 6.27730 6.53764 6.80653 6.93050 7.46945 7.53936 8.35755 8.83739 9.42399 10.95058 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.023470 B = 0.005282 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.728679 B = 5299.898915 C = 5623.207863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C 0.001 3.999 4 H 0.101 0.899 5 C -0.105 4.105 6 C -0.138 4.138 7 C 0.119 3.881 8 N -1.005 6.005 9 S 2.587 3.413 10 O -0.963 6.963 11 O -0.962 6.962 12 C -0.583 4.583 13 C -0.007 4.007 14 C -0.519 4.519 15 H 0.078 0.922 16 C 0.072 3.928 17 N -0.896 5.896 18 Si 0.869 3.131 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.262 1.262 22 C 0.133 3.867 23 H 0.217 0.783 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.028 0.972 33 H 0.032 0.968 34 H 0.266 0.734 35 H 0.096 0.904 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.083 6.963 14.808 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.177 4.177 3 C -0.019 4.019 4 H 0.119 0.881 5 C -0.143 4.143 6 C -0.177 4.177 7 C -0.006 4.006 8 N -0.840 5.840 9 S 2.686 3.314 10 O -0.953 6.953 11 O -0.952 6.952 12 C -0.716 4.716 13 C -0.046 4.046 14 C -0.558 4.558 15 H 0.096 0.904 16 C -0.131 4.131 17 N -0.534 5.534 18 Si 0.695 3.305 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.186 1.186 22 C 0.007 3.993 23 H 0.234 0.766 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.690 6.093 15.086 19.467 hybrid contribution 0.020 -0.233 -0.463 0.519 sum -10.670 5.860 14.622 19.026 Atomic orbital electron populations 1.24881 0.95856 1.00380 1.01151 1.22844 0.93973 1.00649 1.00261 1.18753 0.84577 0.96892 1.01658 0.88137 1.21472 0.95587 0.97741 0.99505 1.22057 0.95333 0.97436 1.02859 1.21522 0.98524 0.85519 0.95059 1.57952 1.15373 1.45625 1.65089 1.05805 0.73551 0.74375 0.77693 1.93543 1.67410 1.46773 1.87601 1.93544 1.47840 1.86097 1.67744 1.30353 1.10377 1.12116 1.18724 1.19413 0.94081 0.93730 0.97423 1.20844 1.32384 1.06987 0.95600 0.90421 1.24982 0.95537 0.97835 0.94714 1.69881 1.38468 1.38800 1.06212 0.86931 0.79266 0.84634 0.79663 1.19658 1.20734 1.18617 1.21303 0.79213 0.96158 1.02606 0.76619 0.91310 0.91405 0.90714 0.90311 0.91141 0.88725 0.85613 0.85722 0.95422 0.94952 0.92373 0.88557 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.95 19.25 29.55 0.57 -1.38 16 2 C -0.18 -1.90 12.56 -37.12 -0.47 -2.37 16 3 C 0.00 0.01 2.72 -93.29 -0.25 -0.24 16 4 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 5 C -0.11 -0.91 5.12 -26.69 -0.14 -1.05 16 6 C -0.14 -1.17 6.10 -26.39 -0.16 -1.33 16 7 C 0.12 1.25 6.34 -3.48 -0.02 1.22 16 8 N -1.00 -12.87 3.21 -113.28 -0.36 -13.23 16 9 S 2.59 43.86 5.41 -107.50 -0.58 43.28 16 10 O -0.96 -18.78 16.72 -57.54 -0.96 -19.75 16 11 O -0.96 -18.55 16.72 -57.54 -0.96 -19.51 16 12 C -0.58 -10.52 6.12 37.16 0.23 -10.29 16 13 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 14 C -0.52 -14.42 9.66 -34.44 -0.33 -14.75 16 15 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 18 Si 0.87 21.44 27.47 -169.99 -4.67 16.77 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 22 C 0.13 1.55 5.55 -3.71 -0.02 1.53 16 23 H 0.22 1.30 7.80 -54.09 -0.42 0.88 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.09 1.02 7.09 -51.93 -0.37 0.66 16 30 H 0.13 2.04 8.14 -51.92 -0.42 1.62 16 31 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 32 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 33 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 34 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.10 1.19 7.10 -51.93 -0.37 0.82 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 313.52 15.07 4.72 4.72 Total: -1.00 -34.14 313.52 -8.16 -42.30 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -5.32 Total: -1.38 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: -0.81 Total: -26.98 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.41 Total: -39.46 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -1.92 Total: -39.26 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: 43.86 SS G_CDS: -0.58 Total: 43.28 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.14 -8.16 -42.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848469875.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.738 kcal (2) G-P(sol) polarization free energy of solvation -34.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds