Wall clock time and date at job start Mon Mar 30 2020 04:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.09006 * 109.49638 * 99.76945 * 3 2 1 5 5 C 1.53045 * 109.49809 * 219.86402 * 3 2 1 6 6 C 1.53037 * 109.53730 * 181.31838 * 5 3 2 7 7 C 1.53625 * 109.24488 * 298.50779 * 6 5 3 8 8 N 1.46931 * 108.53646 * 54.85994 * 7 6 5 9 9 S 1.65606 * 120.62946 * 126.36833 * 8 7 6 10 10 O 1.42094 * 104.27817 * 153.64734 * 9 8 7 11 11 O 1.42106 * 104.27580 * 25.78966 * 9 8 7 12 12 C 1.81396 * 104.45103 * 269.71950 * 9 8 7 13 13 C 1.52997 * 109.47360 * 179.97438 * 12 9 8 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 9 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 C 1.46923 * 118.74107 * 306.09276 * 8 7 6 23 23 H 4.18778 * 15.03294 * 359.97438 * 4 2 1 24 24 H 1.08992 * 109.45755 * 301.33917 * 5 3 2 25 25 H 1.09003 * 109.45626 * 61.29664 * 5 3 2 26 26 H 1.09000 * 109.49856 * 58.59105 * 6 5 3 27 27 H 1.09001 * 109.49668 * 178.65501 * 6 5 3 28 28 H 1.08995 * 109.74167 * 295.12753 * 7 6 5 29 29 H 1.08997 * 109.66277 * 174.54788 * 7 6 5 30 30 H 1.09002 * 109.47134 * 59.99751 * 12 9 8 31 31 H 1.08998 * 109.46953 * 300.00489 * 12 9 8 32 32 H 1.09002 * 109.47153 * 59.99820 * 13 12 9 33 33 H 1.09001 * 109.46832 * 300.00011 * 13 12 9 34 34 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 35 35 H 1.08999 * 109.58750 * 173.64979 * 22 8 7 36 36 H 1.09000 * 109.58679 * 294.07127 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 0.1752 -1.0127 5 6 3.1563 1.1082 0.9247 6 6 4.6863 1.1311 0.9000 7 6 5.2212 -0.2135 1.4158 8 7 4.6212 -1.2918 0.6183 9 16 5.5759 -2.4203 -0.1285 10 8 4.7435 -3.5668 -0.2373 11 8 6.7625 -2.4479 0.6530 12 6 5.9094 -1.7180 -1.7674 13 6 6.7940 -2.6793 -2.5638 14 6 7.0705 -2.0961 -3.9256 15 1 6.6570 -1.1357 -4.1959 16 6 7.8523 -2.7881 -4.8262 17 7 8.0940 -2.2789 -6.0144 18 14 8.5681 -4.4489 -4.3584 19 1 7.6158 -5.5232 -4.7386 20 1 9.8542 -4.6524 -5.0722 21 1 8.8032 -4.4916 -2.8928 22 6 3.1580 -1.3535 0.5009 23 1 -1.0499 -0.0005 0.0001 24 1 2.7732 2.0703 0.5847 25 1 2.8123 0.9194 1.9417 26 1 5.0313 1.2953 -0.1209 27 1 5.0485 1.9355 1.5402 28 1 4.9500 -0.3399 2.4639 29 1 6.3058 -0.2414 1.3108 30 1 6.4209 -0.7620 -1.6558 31 1 4.9683 -1.5669 -2.2962 32 1 6.2829 -3.6355 -2.6754 33 1 7.7350 -2.8298 -2.0347 34 1 8.6437 -2.7660 -6.6481 35 1 2.8808 -2.1338 -0.2079 36 1 2.7220 -1.5711 1.4759 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848469875.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:10 Heat of formation + Delta-G solvation = -54.083782 kcal Electronic energy + Delta-G solvation = -19104.082493 eV Core-core repulsion = 16101.497290 eV Total energy + Delta-G solvation = -3002.585204 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.73774 -38.27570 -37.06911 -35.90171 -34.99101 -33.47829 -32.97427 -31.19504 -27.90427 -25.59257 -24.79621 -23.19915 -21.61503 -19.92085 -19.44976 -18.92289 -18.40805 -17.33989 -17.07323 -16.41535 -15.96947 -15.63852 -15.50381 -15.26258 -14.92751 -14.83884 -14.59584 -13.81170 -13.76623 -13.24975 -13.13648 -13.08049 -12.99524 -12.96735 -12.66022 -12.25975 -12.18809 -12.07923 -11.93046 -11.73094 -11.62248 -11.38950 -11.06040 -10.90535 -10.84795 -9.94032 -8.36939 -6.42649 -0.77102 1.31771 1.33597 1.43676 1.59524 1.94645 1.95732 2.29282 2.78475 2.97132 3.11216 3.40567 3.66356 3.90307 3.94507 4.03224 4.04557 4.21465 4.31682 4.36934 4.55920 4.56297 4.80141 4.83463 4.95538 5.03654 5.08859 5.09814 5.14360 5.19114 5.27537 5.44109 5.47058 5.61117 6.16476 6.63333 6.73760 7.21852 8.78680 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.023470 B = 0.005282 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.728679 B = 5299.898915 C = 5623.207863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.214 4.214 3 C 0.001 3.999 4 H 0.094 0.906 5 C -0.101 4.101 6 C -0.134 4.134 7 C 0.109 3.891 8 N -0.995 5.995 9 S 2.615 3.385 10 O -0.989 6.989 11 O -0.984 6.984 12 C -0.588 4.588 13 C -0.017 4.017 14 C -0.527 4.527 15 H 0.049 0.951 16 C 0.015 3.985 17 N -0.940 5.940 18 Si 0.924 3.076 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.249 1.249 22 C 0.129 3.871 23 H 0.246 0.754 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.029 0.971 33 H 0.033 0.967 34 H 0.270 0.730 35 H 0.085 0.915 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.992 7.198 16.707 21.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.214 4.214 3 C -0.018 4.018 4 H 0.112 0.888 5 C -0.139 4.139 6 C -0.173 4.173 7 C -0.016 4.016 8 N -0.833 5.833 9 S 2.712 3.288 10 O -0.979 6.979 11 O -0.974 6.974 12 C -0.719 4.719 13 C -0.056 4.056 14 C -0.566 4.566 15 H 0.068 0.932 16 C -0.184 4.184 17 N -0.580 5.580 18 Si 0.747 3.253 19 H -0.186 1.186 20 H -0.198 1.198 21 H -0.173 1.173 22 C 0.003 3.997 23 H 0.262 0.738 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.121 0.879 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.159 0.841 31 H 0.154 0.846 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.595 6.334 16.979 21.514 hybrid contribution 0.184 -0.196 -1.022 1.057 sum -11.410 6.138 15.957 20.554 Atomic orbital electron populations 1.25692 0.96746 0.98880 0.99707 1.23134 0.94579 1.02066 1.01651 1.18714 0.84773 0.96581 1.01754 0.88752 1.21464 0.95473 0.97406 0.99509 1.22062 0.95246 0.96897 1.03066 1.21843 0.98394 0.85567 0.95746 1.57617 1.15614 1.45708 1.64368 1.04747 0.73073 0.74230 0.76764 1.93505 1.67954 1.48663 1.87781 1.93510 1.49380 1.86629 1.67880 1.30355 1.10112 1.11730 1.19747 1.19373 0.95329 0.94908 0.95985 1.21168 1.31660 1.06040 0.97696 0.93245 1.25859 0.96171 1.01723 0.94646 1.70007 1.39812 1.40670 1.07492 0.86039 0.78968 0.80191 0.80139 1.18599 1.19826 1.17278 1.21452 0.78134 0.96909 1.03162 0.73797 0.90496 0.90585 0.91223 0.87853 0.89265 0.89105 0.84101 0.84572 0.95258 0.94893 0.92110 0.89686 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.24 19.25 74.32 1.43 -1.80 16 2 C -0.21 -4.25 12.56 31.12 0.39 -3.86 16 3 C 0.00 0.03 2.72 -12.52 -0.03 -0.01 16 4 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 5 C -0.10 -1.49 5.12 30.62 0.16 -1.33 16 6 C -0.13 -1.93 6.10 30.82 0.19 -1.74 16 7 C 0.11 2.03 6.34 86.51 0.55 2.58 16 8 N -1.00 -23.94 3.21 -512.29 -1.65 -25.58 16 9 S 2.61 86.19 5.41 -56.49 -0.31 85.88 16 10 O -0.99 -37.87 16.72 -127.65 -2.13 -40.01 16 11 O -0.98 -36.84 16.72 -127.65 -2.13 -38.98 16 12 C -0.59 -20.99 6.12 71.98 0.44 -20.55 16 13 C -0.02 -0.79 4.05 29.85 0.12 -0.67 16 14 C -0.53 -29.75 9.66 25.60 0.25 -29.51 16 15 H 0.05 2.98 7.99 -2.91 -0.02 2.95 16 16 C 0.01 0.84 5.47 84.66 0.46 1.31 16 17 N -0.94 -57.82 13.96 21.45 0.30 -57.52 16 18 Si 0.92 43.87 27.47 68.60 1.88 45.76 16 19 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.25 -11.23 6.54 99.48 0.65 -10.57 16 22 C 0.13 2.81 5.55 86.36 0.48 3.29 16 23 H 0.25 2.19 7.80 -4.42 -0.03 2.16 16 24 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.09 1.79 7.09 -2.39 -0.02 1.78 16 30 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 31 H 0.14 4.46 8.14 -2.39 -0.02 4.44 16 32 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 33 H 0.03 1.53 7.20 -2.39 -0.02 1.51 16 34 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.08 2.05 7.10 -2.39 -0.02 2.03 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -73.37 313.52 1.39 -71.99 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.99 Total: 10.76 kcal Atomic # 6 Polarization: -56.73 SS G_CDS: 4.43 Total: -52.30 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -1.35 Total: -83.10 kcal Atomic # 8 Polarization: -74.71 SS G_CDS: -4.27 Total: -78.98 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.76 kcal Atomic # 16 Polarization: 86.19 SS G_CDS: -0.31 Total: 85.88 kcal Total: -73.37 1.39 -71.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848469875.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.904 kcal (2) G-P(sol) polarization free energy of solvation -73.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds