Wall clock time and date at job start Mon Mar 30 2020 04:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46739 * 241.16054 * 3 2 1 5 5 H 1.08996 * 110.77902 * 56.79359 * 4 3 2 6 6 C 1.55157 * 110.72222 * 293.54533 * 4 3 2 7 7 C 1.54901 * 101.58260 * 206.13748 * 6 4 3 8 8 N 1.47426 * 104.83400 * 37.01041 * 7 6 4 9 9 S 1.65598 * 125.65034 * 155.83651 * 8 7 6 10 10 O 1.42098 * 104.28128 * 206.10010 * 9 8 7 11 11 O 1.42103 * 104.27593 * 333.95338 * 9 8 7 12 12 C 1.81401 * 104.45361 * 90.02475 * 9 8 7 13 13 C 1.52999 * 109.47400 * 180.02562 * 12 9 8 14 14 C 1.50695 * 109.47060 * 179.97438 * 13 12 9 15 15 H 1.08002 * 120.00107 * 0.02562 * 14 13 12 16 16 C 1.37870 * 119.99921 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00058 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00015 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47373 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47381 * 120.00564 * 18 16 14 21 21 H 1.48507 * 109.46973 * 240.00081 * 18 16 14 22 22 C 1.47019 * 108.70376 * 335.87327 * 8 7 6 23 23 H 4.44642 * 5.63288 * 179.97438 * 4 1 2 24 24 H 1.09005 * 109.46614 * 121.16326 * 3 2 1 25 25 H 1.08993 * 109.47022 * 1.16293 * 3 2 1 26 26 H 1.09002 * 111.00633 * 324.21645 * 6 4 3 27 27 H 1.09002 * 110.99939 * 88.02424 * 6 4 3 28 28 H 1.09004 * 110.36831 * 155.84850 * 7 6 4 29 29 H 1.08999 * 110.37045 * 278.17261 * 7 6 4 30 30 H 1.09002 * 109.46978 * 300.00382 * 12 9 8 31 31 H 1.09001 * 109.46337 * 59.99743 * 12 9 8 32 32 H 1.08997 * 109.46907 * 300.00088 * 13 12 9 33 33 H 1.08999 * 109.46984 * 60.00073 * 13 12 9 34 34 H 0.97006 * 120.00241 * 179.97438 * 17 16 14 35 35 H 1.09000 * 109.88042 * 241.64152 * 22 8 7 36 36 H 1.08996 * 109.88551 * 120.47294 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1557 0.6967 1.2636 5 1 2.7586 0.2152 2.1572 6 6 2.7914 2.2048 1.2446 7 6 3.9022 2.8044 2.1423 8 7 5.1103 2.0232 1.8205 9 16 6.6724 2.5355 2.0196 10 8 7.4106 1.7900 1.0612 11 8 6.5895 3.9519 1.9400 12 6 7.1081 2.0169 3.7024 13 6 8.5462 2.4387 4.0099 14 6 8.9078 2.0084 5.4081 15 1 8.1844 1.4859 6.0164 16 6 10.1625 2.2809 5.9104 17 7 11.0436 2.9167 5.1695 18 14 10.6110 1.7468 7.6434 19 1 9.4529 1.0542 8.2633 20 1 11.7710 0.8211 7.5915 21 1 10.9660 2.9402 8.4529 22 6 4.6986 0.7142 1.2928 23 1 -1.0500 0.0001 -0.0003 24 1 3.0091 0.5327 -0.8794 25 1 3.0098 -1.0266 -0.0209 26 1 2.8466 2.6073 0.2331 27 1 1.8051 2.3739 1.6768 28 1 4.0562 3.8568 1.9034 29 1 3.6440 2.6873 3.1947 30 1 6.4312 2.4887 4.4147 31 1 7.0218 0.9332 3.7822 32 1 9.2233 1.9673 3.2977 33 1 8.6319 3.5224 3.9301 34 1 11.9263 3.1087 5.5231 35 1 5.0661 -0.0798 1.9428 36 1 5.0899 0.5813 0.2842 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863415029.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:41 Heat of formation + Delta-G solvation = -32.409083 kcal Electronic energy + Delta-G solvation = -18547.704794 eV Core-core repulsion = 15546.059476 eV Total energy + Delta-G solvation = -3001.645318 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.93078 -36.60202 -35.43816 -34.61741 -33.88955 -31.36958 -31.15468 -29.60845 -26.57491 -25.57989 -22.51718 -21.48493 -20.78794 -18.74989 -18.27580 -17.52836 -16.62090 -16.24907 -15.48073 -15.16089 -14.56798 -14.44207 -14.24894 -13.83204 -13.68734 -13.33571 -12.90150 -12.64793 -12.44680 -11.75538 -11.71298 -11.61564 -11.54181 -11.32865 -11.21980 -11.09619 -10.96064 -10.90372 -10.40414 -10.39426 -10.36823 -10.28652 -9.76706 -9.31195 -8.73933 -8.51182 -6.12980 -4.18554 0.73426 2.56691 2.61792 3.06510 3.24951 3.32186 3.35706 4.00735 4.28806 4.32929 4.38802 4.45397 4.62287 4.79691 5.15612 5.19134 5.22174 5.23920 5.41156 5.48145 5.54796 5.62406 5.68326 5.72754 5.78844 5.81142 5.87563 6.07118 6.18697 6.49067 6.50102 7.29727 7.35717 7.38798 7.80277 8.17189 8.85130 9.46303 10.98105 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.034070 B = 0.003905 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.636021 B = 7169.470262 C = 7502.641996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.178 4.178 3 C -0.007 4.007 4 C -0.093 4.093 5 H 0.089 0.911 6 C -0.123 4.123 7 C 0.114 3.886 8 N -1.019 6.019 9 S 2.606 3.394 10 O -0.962 6.962 11 O -0.962 6.962 12 C -0.589 4.589 13 C 0.027 3.973 14 C -0.520 4.520 15 H 0.062 0.938 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.124 3.876 23 H 0.215 0.785 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.033 0.967 33 H 0.033 0.967 34 H 0.265 0.735 35 H 0.068 0.932 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.099 -5.043 -7.909 21.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.178 4.178 3 C -0.044 4.044 4 C -0.113 4.113 5 H 0.107 0.893 6 C -0.162 4.162 7 C -0.011 4.011 8 N -0.856 5.856 9 S 2.706 3.294 10 O -0.953 6.953 11 O -0.953 6.953 12 C -0.722 4.722 13 C -0.012 4.012 14 C -0.559 4.559 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.727 3.273 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.002 4.002 23 H 0.232 0.768 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.324 -4.474 -8.592 20.727 hybrid contribution -0.076 -0.605 1.583 1.696 sum -18.399 -5.079 -7.009 20.334 Atomic orbital electron populations 1.24872 0.95935 1.01521 1.00995 1.23053 0.94424 1.00034 1.00298 1.18770 0.84828 1.02230 0.98540 1.22224 0.94597 0.96421 0.98080 0.89256 1.22837 0.98306 0.94259 1.00773 1.22004 0.83898 0.96342 0.98847 1.58894 1.22397 1.24707 1.79615 1.05279 0.71304 0.74260 0.78559 1.93531 1.69621 1.73410 1.58689 1.93531 1.84833 1.29348 1.87552 1.30489 1.10716 1.11126 1.19871 1.18974 0.85011 0.97836 0.99367 1.21042 0.98636 1.38051 0.98180 0.91997 1.25074 0.96336 0.94977 0.98142 1.69967 1.05884 1.40221 1.36784 0.86409 0.78499 0.78433 0.83910 1.19646 1.20786 1.20782 1.21693 0.93935 0.84747 0.99786 0.76826 0.89041 0.88984 0.90494 0.90170 0.89773 0.91597 0.86287 0.86302 0.94828 0.94833 0.92570 0.91334 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.72 19.25 29.55 0.57 -1.15 16 2 C -0.18 -1.57 12.88 -37.12 -0.48 -2.05 16 3 C -0.01 -0.05 5.08 -29.52 -0.15 -0.20 16 4 C -0.09 -0.81 2.95 -88.78 -0.26 -1.07 16 5 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 6 C -0.12 -1.11 6.07 -24.59 -0.15 -1.26 16 7 C 0.11 1.30 7.07 -2.53 -0.02 1.28 16 8 N -1.02 -13.99 3.62 -111.42 -0.40 -14.39 16 9 S 2.61 47.68 5.65 -107.50 -0.61 47.07 16 10 O -0.96 -20.11 17.60 -57.54 -1.01 -21.13 16 11 O -0.96 -20.21 17.28 -57.54 -0.99 -21.21 16 12 C -0.59 -11.40 6.12 37.16 0.23 -11.17 16 13 C 0.03 0.70 4.98 -27.89 -0.14 0.56 16 14 C -0.52 -14.45 9.11 -34.45 -0.31 -14.76 16 15 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 18 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.12 1.37 6.49 -3.06 -0.02 1.35 16 23 H 0.21 1.03 7.80 -54.09 -0.42 0.60 16 24 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.70 8.02 -51.93 -0.42 0.28 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.01 7.67 -51.93 -0.40 0.61 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 31 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 32 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.82 7.82 -51.93 -0.41 0.41 16 LS Contribution 322.50 15.07 4.86 4.86 Total: -1.00 -35.00 322.50 -8.68 -43.68 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -5.41 Total: -2.31 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: -0.83 Total: -26.96 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.33 Total: -40.23 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -2.01 Total: -42.33 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 47.68 SS G_CDS: -0.61 Total: 47.07 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.00 -8.68 -43.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863415029.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.273 kcal (2) G-P(sol) polarization free energy of solvation -35.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds