Wall clock time and date at job start Mon Mar 30 2020 04:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46739 * 241.16054 * 3 2 1 5 5 H 1.08996 * 110.77902 * 56.79359 * 4 3 2 6 6 C 1.55157 * 110.72222 * 293.54533 * 4 3 2 7 7 C 1.54901 * 101.58260 * 206.13748 * 6 4 3 8 8 N 1.47426 * 104.83400 * 37.01041 * 7 6 4 9 9 S 1.65598 * 125.65034 * 155.83651 * 8 7 6 10 10 O 1.42098 * 104.28128 * 206.10010 * 9 8 7 11 11 O 1.42103 * 104.27593 * 333.95338 * 9 8 7 12 12 C 1.81401 * 104.45361 * 90.02475 * 9 8 7 13 13 C 1.52999 * 109.47400 * 180.02562 * 12 9 8 14 14 C 1.50695 * 109.47060 * 179.97438 * 13 12 9 15 15 H 1.08002 * 120.00107 * 0.02562 * 14 13 12 16 16 C 1.37870 * 119.99921 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00058 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00015 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47373 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47381 * 120.00564 * 18 16 14 21 21 H 1.48507 * 109.46973 * 240.00081 * 18 16 14 22 22 C 1.47019 * 108.70376 * 335.87327 * 8 7 6 23 23 H 4.44642 * 5.63288 * 179.97438 * 4 1 2 24 24 H 1.09005 * 109.46614 * 121.16326 * 3 2 1 25 25 H 1.08993 * 109.47022 * 1.16293 * 3 2 1 26 26 H 1.09002 * 111.00633 * 324.21645 * 6 4 3 27 27 H 1.09002 * 110.99939 * 88.02424 * 6 4 3 28 28 H 1.09004 * 110.36831 * 155.84850 * 7 6 4 29 29 H 1.08999 * 110.37045 * 278.17261 * 7 6 4 30 30 H 1.09002 * 109.46978 * 300.00382 * 12 9 8 31 31 H 1.09001 * 109.46337 * 59.99743 * 12 9 8 32 32 H 1.08997 * 109.46907 * 300.00088 * 13 12 9 33 33 H 1.08999 * 109.46984 * 60.00073 * 13 12 9 34 34 H 0.97006 * 120.00241 * 179.97438 * 17 16 14 35 35 H 1.09000 * 109.88042 * 241.64152 * 22 8 7 36 36 H 1.08996 * 109.88551 * 120.47294 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1557 0.6967 1.2636 5 1 2.7586 0.2152 2.1572 6 6 2.7914 2.2048 1.2446 7 6 3.9022 2.8044 2.1423 8 7 5.1103 2.0232 1.8205 9 16 6.6724 2.5355 2.0196 10 8 7.4106 1.7900 1.0612 11 8 6.5895 3.9519 1.9400 12 6 7.1081 2.0169 3.7024 13 6 8.5462 2.4387 4.0099 14 6 8.9078 2.0084 5.4081 15 1 8.1844 1.4859 6.0164 16 6 10.1625 2.2809 5.9104 17 7 11.0436 2.9167 5.1695 18 14 10.6110 1.7468 7.6434 19 1 9.4529 1.0542 8.2633 20 1 11.7710 0.8211 7.5915 21 1 10.9660 2.9402 8.4529 22 6 4.6986 0.7142 1.2928 23 1 -1.0500 0.0001 -0.0003 24 1 3.0091 0.5327 -0.8794 25 1 3.0098 -1.0266 -0.0209 26 1 2.8466 2.6073 0.2331 27 1 1.8051 2.3739 1.6768 28 1 4.0562 3.8568 1.9034 29 1 3.6440 2.6873 3.1947 30 1 6.4312 2.4887 4.4147 31 1 7.0218 0.9332 3.7822 32 1 9.2233 1.9673 3.2977 33 1 8.6319 3.5224 3.9301 34 1 11.9263 3.1087 5.5231 35 1 5.0661 -0.0798 1.9428 36 1 5.0899 0.5813 0.2842 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863415029.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:40 Heat of formation + Delta-G solvation = -56.507192 kcal Electronic energy + Delta-G solvation = -18548.749767 eV Core-core repulsion = 15546.059476 eV Total energy + Delta-G solvation = -3002.690290 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.77375 -38.19891 -37.03660 -35.90895 -35.32833 -33.13672 -32.12980 -30.44457 -27.63907 -27.27950 -23.80139 -23.07300 -21.55581 -19.96800 -19.21639 -18.84743 -18.31524 -17.42250 -17.04078 -16.56123 -16.41536 -15.29925 -15.16030 -14.95871 -14.70143 -14.51613 -14.43406 -13.79798 -13.74296 -13.38279 -13.23342 -13.16758 -12.95987 -12.80256 -12.67353 -12.30425 -12.25168 -12.11682 -11.97015 -11.74880 -11.65091 -11.15908 -10.98882 -10.87345 -10.66767 -9.89429 -8.27244 -6.41618 -0.75132 1.40526 1.41238 1.54671 1.73674 1.99285 2.03111 2.37355 2.84318 3.05592 3.07249 3.44318 3.64099 3.81178 3.97398 4.03322 4.13366 4.38688 4.51342 4.52440 4.61909 4.73492 4.79162 4.84346 4.97279 5.08368 5.09517 5.15201 5.24220 5.26248 5.29228 5.37073 5.53213 5.67187 6.04870 6.72266 6.81427 7.28796 8.85301 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.034070 B = 0.003905 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.636021 B = 7169.470262 C = 7502.641996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.207 4.207 3 C -0.006 4.006 4 C -0.081 4.081 5 H 0.102 0.898 6 C -0.116 4.116 7 C 0.103 3.897 8 N -1.015 6.015 9 S 2.632 3.368 10 O -0.992 6.992 11 O -0.994 6.994 12 C -0.586 4.586 13 C 0.019 3.981 14 C -0.539 4.539 15 H 0.076 0.924 16 C -0.005 4.005 17 N -0.935 5.935 18 Si 0.976 3.024 19 H -0.255 1.255 20 H -0.278 1.278 21 H -0.278 1.278 22 C 0.111 3.889 23 H 0.239 0.761 24 H 0.092 0.908 25 H 0.104 0.896 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.007 0.993 33 H 0.006 0.994 34 H 0.268 0.732 35 H 0.082 0.918 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.423 -6.427 -6.870 23.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.207 4.207 3 C -0.043 4.043 4 C -0.101 4.101 5 H 0.120 0.880 6 C -0.155 4.155 7 C -0.021 4.021 8 N -0.854 5.854 9 S 2.731 3.269 10 O -0.983 6.983 11 O -0.984 6.984 12 C -0.719 4.719 13 C -0.019 4.019 14 C -0.578 4.578 15 H 0.094 0.906 16 C -0.203 4.203 17 N -0.574 5.574 18 Si 0.799 3.201 19 H -0.179 1.179 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.014 4.014 23 H 0.255 0.745 24 H 0.110 0.890 25 H 0.122 0.878 26 H 0.093 0.907 27 H 0.117 0.883 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.158 0.842 31 H 0.159 0.841 32 H 0.025 0.975 33 H 0.024 0.976 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.651 -5.863 -7.547 22.755 hybrid contribution 0.544 -0.177 1.185 1.316 sum -20.107 -6.040 -6.362 21.938 Atomic orbital electron populations 1.25611 0.96838 1.00609 0.99937 1.23384 0.95059 1.00957 1.01298 1.18766 0.84610 1.02886 0.97995 1.22164 0.92468 0.96308 0.99196 0.88009 1.22835 0.98182 0.94263 1.00268 1.22318 0.83414 0.95705 1.00694 1.58464 1.21276 1.26336 1.79331 1.04139 0.72057 0.73144 0.77542 1.93484 1.71515 1.73838 1.59416 1.93483 1.85821 1.31433 1.87690 1.30383 1.06974 1.12739 1.21759 1.18833 0.88696 0.95966 0.98445 1.21545 0.99200 1.37883 0.99176 0.90621 1.26139 0.96340 0.94886 1.02947 1.70111 1.06478 1.41675 1.39160 0.85237 0.78610 0.78124 0.78101 1.17894 1.20311 1.20331 1.22026 0.95926 0.83503 0.99922 0.74465 0.88974 0.87767 0.90715 0.88262 0.90845 0.89606 0.84203 0.84096 0.97492 0.97568 0.92350 0.89980 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.83 19.25 74.32 1.43 -1.40 16 2 C -0.21 -3.16 12.88 31.12 0.40 -2.76 16 3 C -0.01 -0.08 5.08 28.79 0.15 0.07 16 4 C -0.08 -1.20 2.95 -9.60 -0.03 -1.23 16 5 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 6 C -0.12 -1.83 6.07 31.98 0.19 -1.63 16 7 C 0.10 2.15 7.07 86.85 0.61 2.77 16 8 N -1.01 -26.53 3.62 -506.43 -1.83 -28.37 16 9 S 2.63 96.84 5.65 -56.49 -0.32 96.52 16 10 O -0.99 -42.17 17.60 -127.65 -2.25 -44.42 16 11 O -0.99 -42.62 17.28 -127.65 -2.21 -44.82 16 12 C -0.59 -22.49 6.12 71.98 0.44 -22.05 16 13 C 0.02 1.03 4.98 29.85 0.15 1.18 16 14 C -0.54 -30.10 9.11 25.60 0.23 -29.87 16 15 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 16 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 17 N -0.93 -57.20 13.29 21.44 0.28 -56.92 16 18 Si 0.98 43.37 29.54 68.60 2.03 45.40 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 20 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 22 C 0.11 2.24 6.49 86.73 0.56 2.81 16 23 H 0.24 1.55 7.80 -4.42 -0.03 1.51 16 24 H 0.09 1.19 8.10 -2.38 -0.02 1.17 16 25 H 0.10 1.10 8.14 -2.39 -0.02 1.09 16 26 H 0.07 1.22 8.02 -2.39 -0.02 1.20 16 27 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 1.70 7.67 -2.38 -0.02 1.68 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.14 4.72 8.14 -2.39 -0.02 4.70 16 31 H 0.14 4.72 8.14 -2.39 -0.02 4.70 16 32 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.49 7.82 -2.39 -0.02 1.48 16 Total: -1.00 -76.55 322.50 1.35 -75.20 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 1.04 Total: 9.35 kcal Atomic # 6 Polarization: -56.54 SS G_CDS: 4.61 Total: -51.93 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -1.55 Total: -85.28 kcal Atomic # 8 Polarization: -84.79 SS G_CDS: -4.45 Total: -89.24 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 96.84 SS G_CDS: -0.32 Total: 96.52 kcal Total: -76.55 1.35 -75.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863415029.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.688 kcal (2) G-P(sol) polarization free energy of solvation -76.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds