Wall clock time and date at job start Mon Mar 30 2020 05:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30697 * 1 3 3 Si 1.86804 * 120.00035 * 2 1 4 4 H 1.48501 * 109.46911 * 270.00350 * 3 2 1 5 5 H 1.48497 * 109.47192 * 30.00127 * 3 2 1 6 6 H 1.48505 * 109.47153 * 150.00310 * 3 2 1 7 7 C 1.40158 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99783 * 162.36221 * 7 2 1 9 9 C 1.40965 * 119.99887 * 342.64010 * 7 2 1 10 10 C 1.40962 * 120.09549 * 334.82100 * 9 7 2 11 11 C 1.36205 * 119.89357 * 179.75862 * 10 9 7 12 12 C 1.40133 * 120.10188 * 0.52176 * 11 10 9 13 13 C 1.47419 * 119.90315 * 179.75836 * 12 11 10 14 14 N 1.32316 * 126.69269 * 359.97231 * 13 12 11 15 15 C 1.34092 * 105.54446 * 179.97438 * 14 13 12 16 16 C 1.50700 * 126.16400 * 179.97438 * 15 14 13 17 17 N 1.46897 * 115.55093 * 34.41470 * 16 15 14 18 18 C 1.52999 * 117.49653 * 248.74156 * 16 15 14 19 19 C 1.53002 * 117.49572 * 180.08715 * 16 15 14 20 20 N 1.30110 * 107.66693 * 359.97438 * 15 14 13 21 21 O 1.21290 * 110.51678 * 359.74545 * 20 15 14 22 22 C 1.40135 * 120.19800 * 359.72985 * 12 11 10 23 23 C 1.36205 * 120.10078 * 0.02562 * 22 12 11 24 24 H 0.97000 * 119.99817 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.05635 * 0.02562 * 10 9 7 26 26 H 1.08008 * 119.94815 * 180.24847 * 11 10 9 27 27 H 1.00904 * 111.00352 * 325.58246 * 17 16 15 28 28 H 1.00902 * 110.99950 * 89.53818 * 17 16 15 29 29 H 1.09001 * 117.50266 * 0.02562 * 18 16 15 30 30 H 1.09000 * 117.49860 * 145.02334 * 18 16 15 31 31 H 1.09006 * 117.49683 * 214.97883 * 19 16 15 32 32 H 1.08999 * 117.50004 * 359.97235 * 19 16 15 33 33 H 1.07998 * 119.94989 * 179.97438 * 22 12 11 34 34 H 1.08002 * 120.04969 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.4884 2.0464 -1.4001 5 1 1.4385 2.6527 0.7000 6 1 3.5386 1.4402 0.7000 7 6 2.0078 -1.2138 -0.0005 8 1 3.0497 -1.2356 -0.2840 9 6 1.3511 -2.4069 0.3632 10 6 0.2218 -2.3637 1.2057 11 6 -0.4125 -3.5186 1.5506 12 6 0.0624 -4.7494 1.0780 13 6 -0.6244 -5.9972 1.4583 14 7 -1.6914 -6.1079 2.2329 15 6 -1.9557 -7.4210 2.2949 16 6 -3.0824 -8.0662 3.0601 17 7 -4.3295 -7.2926 3.1239 18 6 -2.7138 -8.9142 4.2791 19 6 -3.1990 -9.5904 2.9944 20 7 -1.0642 -8.0377 1.5754 21 8 -0.2929 -7.2428 1.0811 22 6 1.1878 -4.7976 0.2445 23 6 1.8255 -3.6473 -0.1096 24 1 -0.4850 0.8401 0.0004 25 1 -0.1425 -1.4159 1.5738 26 1 -1.2803 -3.4861 2.1929 27 1 -4.1392 -6.3025 3.1653 28 1 -4.9319 -7.5128 2.3449 29 1 -1.6565 -9.0051 4.5279 30 1 -3.3969 -8.8983 5.1283 31 1 -4.2012 -10.0191 2.9990 32 1 -2.4612 -10.1264 2.3975 33 1 1.5507 -5.7484 -0.1171 34 1 2.6925 -3.6854 -0.7523 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905323408.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:04 Heat of formation + Delta-G solvation = 88.950873 kcal Electronic energy + Delta-G solvation = -19343.867101 eV Core-core repulsion = 16244.333146 eV Total energy + Delta-G solvation = -3099.533956 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.27879 -39.60628 -39.25398 -36.38119 -35.79370 -33.54135 -32.23952 -31.62151 -31.20571 -27.75722 -25.81121 -24.67007 -23.47171 -23.05716 -22.41848 -20.85159 -19.41641 -18.92944 -18.78235 -17.30686 -16.98873 -16.96729 -16.28151 -15.82138 -15.54223 -15.31332 -14.54639 -14.12470 -14.06404 -13.85952 -13.51972 -13.33854 -13.12349 -12.92560 -12.80126 -12.48674 -12.40726 -12.01250 -11.91993 -11.73856 -11.61827 -11.41076 -11.19225 -10.84215 -10.06725 -9.65282 -9.33699 -8.86184 -6.52156 -0.24489 0.81108 1.12193 1.32598 1.41842 1.55863 1.67680 1.95440 2.14635 2.51812 2.60402 2.63751 3.09789 3.28984 3.59531 3.86809 3.98551 4.29179 4.35938 4.37887 4.48460 4.62959 4.80618 4.89964 4.93586 4.96907 5.03129 5.12129 5.13974 5.23716 5.53399 5.74268 5.88411 5.92906 5.97001 6.11794 6.27338 6.46983 6.68138 6.79200 7.26225 8.07356 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.041886 B = 0.003678 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.315660 B = 7611.332398 C = 8098.273966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.035 3.965 3 Si 0.990 3.010 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.253 1.253 7 C -0.450 4.450 8 H 0.098 0.902 9 C 0.103 3.897 10 C -0.195 4.195 11 C -0.036 4.036 12 C -0.211 4.211 13 C 0.274 3.726 14 N -0.535 5.535 15 C 0.181 3.819 16 C 0.094 3.906 17 N -0.784 5.784 18 C -0.132 4.132 19 C -0.134 4.134 20 N -0.419 5.419 21 O 0.042 5.958 22 C -0.034 4.034 23 C -0.238 4.238 24 H 0.300 0.700 25 H 0.113 0.887 26 H 0.106 0.894 27 H 0.354 0.646 28 H 0.352 0.648 29 H 0.087 0.913 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.097 0.903 33 H 0.124 0.876 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.190 -6.643 3.151 8.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.186 4.186 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.177 1.177 7 C -0.476 4.476 8 H 0.116 0.884 9 C 0.099 3.901 10 C -0.215 4.215 11 C -0.056 4.056 12 C -0.216 4.216 13 C 0.064 3.936 14 N -0.270 5.270 15 C -0.095 4.095 16 C -0.002 4.002 17 N -0.313 5.313 18 C -0.171 4.171 19 C -0.172 4.172 20 N -0.137 5.137 21 O -0.008 6.008 22 C -0.054 4.054 23 C -0.258 4.258 24 H 0.111 0.889 25 H 0.131 0.869 26 H 0.124 0.876 27 H 0.168 0.832 28 H 0.166 0.834 29 H 0.106 0.894 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.116 0.884 33 H 0.142 0.858 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.883 -7.594 3.966 9.406 hybrid contribution 0.662 1.366 -1.159 1.910 sum -3.221 -6.228 2.807 7.552 Atomic orbital electron populations 1.69789 1.09489 1.32085 1.29826 1.27046 0.95515 1.05259 0.90782 0.85061 0.79225 0.74891 0.79897 1.18288 1.18984 1.17678 1.20276 0.98995 0.91837 1.36494 0.88420 1.18186 0.90854 0.93459 0.87610 1.20934 1.00669 0.96761 1.03133 1.20446 0.97385 0.91066 0.96700 1.16774 1.03602 0.85621 1.15581 1.26653 0.89892 0.87615 0.89409 1.72010 1.15646 1.16603 1.22736 1.25985 0.98437 0.87206 0.97843 1.19102 0.86384 0.92438 1.02275 1.58798 1.11009 1.11966 1.49573 1.23303 1.02289 0.98991 0.92489 1.23309 1.04732 0.89265 0.99870 1.74400 1.06332 1.16458 1.16516 1.85304 1.44725 1.14791 1.55954 1.20614 0.92621 0.98391 0.93793 1.20881 1.05015 0.92053 1.07802 0.88881 0.86898 0.87619 0.83215 0.83373 0.89401 0.85299 0.84823 0.88450 0.85776 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.32 10.95 21.86 0.24 -36.08 16 2 C 0.03 1.51 5.14 85.33 0.44 1.95 16 3 Si 0.99 32.52 29.60 68.60 2.03 34.55 16 4 H -0.26 -8.19 7.11 99.48 0.71 -7.48 16 5 H -0.27 -8.40 7.11 99.48 0.71 -7.70 16 6 H -0.25 -8.16 7.11 99.48 0.71 -7.46 16 7 C -0.45 -20.96 9.03 23.40 0.21 -20.75 16 8 H 0.10 4.23 7.91 -2.91 -0.02 4.21 16 9 C 0.10 4.99 5.57 -21.28 -0.12 4.87 16 10 C -0.20 -9.56 8.62 22.46 0.19 -9.36 16 11 C -0.04 -1.67 9.63 22.26 0.21 -1.46 16 12 C -0.21 -9.41 5.89 -19.94 -0.12 -9.52 16 13 C 0.27 11.69 7.99 87.15 0.70 12.38 16 14 N -0.53 -21.96 10.92 -302.39 -3.30 -25.26 16 15 C 0.18 6.61 7.51 138.54 1.04 7.65 16 16 C 0.09 2.64 3.15 2.78 0.01 2.64 16 17 N -0.78 -19.43 9.75 -154.53 -1.51 -20.94 16 18 C -0.13 -3.04 10.17 30.62 0.31 -2.73 16 19 C -0.13 -2.89 10.07 30.62 0.31 -2.58 16 20 N -0.42 -16.08 11.71 -58.25 -0.68 -16.76 16 21 O 0.04 1.72 11.12 68.66 0.76 2.48 16 22 C -0.03 -1.45 9.66 22.26 0.21 -1.23 16 23 C -0.24 -10.51 9.73 22.46 0.22 -10.29 16 24 H 0.30 12.27 8.29 -92.71 -0.77 11.50 16 25 H 0.11 5.67 6.17 -2.91 -0.02 5.65 16 26 H 0.11 4.74 7.86 -2.91 -0.02 4.71 16 27 H 0.35 9.79 8.64 -89.69 -0.77 9.01 16 28 H 0.35 7.47 9.08 -89.69 -0.81 6.65 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.13 2.48 8.14 -2.39 -0.02 2.47 16 31 H 0.13 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.10 2.27 7.88 -2.39 -0.02 2.25 16 33 H 0.12 4.56 7.93 -2.91 -0.02 4.53 16 34 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -53.76 303.78 0.74 -53.02 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: -0.42 Total: 37.40 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 3.62 Total: -28.42 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -5.25 Total: -99.03 kcal Atomic # 8 Polarization: 1.72 SS G_CDS: 0.76 Total: 2.48 kcal Atomic # 14 Polarization: 32.52 SS G_CDS: 2.03 Total: 34.55 kcal Total: -53.76 0.74 -53.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905323408.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.975 kcal (2) G-P(sol) polarization free energy of solvation -53.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds