Wall clock time and date at job start Mon Mar 30 2020 04:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00051 * 2 1 4 4 C 1.53002 * 109.47200 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47159 * 179.97438 * 4 3 2 6 6 N 1.40580 * 127.38506 * 269.95803 * 5 4 3 7 7 N 1.28905 * 106.83588 * 180.02562 * 6 5 4 8 8 N 1.28423 * 110.33647 * 359.72579 * 7 6 5 9 9 C 1.31542 * 110.50029 * 0.45729 * 8 7 6 10 10 S 1.76198 * 126.45130 * 179.81686 * 9 8 7 11 11 C 1.81002 * 100.00092 * 359.69140 * 10 9 8 12 12 C 1.52997 * 109.47326 * 179.97438 * 11 10 9 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47592 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00057 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00356 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00113 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99923 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47375 * 89.99678 * 18 16 14 20 20 H 1.48508 * 109.47196 * 209.99673 * 18 16 14 21 21 H 1.48504 * 109.47051 * 329.99297 * 18 16 14 22 22 H 1.08995 * 109.47025 * 299.99950 * 1 2 3 23 23 H 1.09004 * 109.47034 * 60.00383 * 1 2 3 24 24 H 1.08998 * 109.46935 * 179.97438 * 1 2 3 25 25 H 1.00896 * 111.00107 * 236.04205 * 2 1 3 26 26 H 1.08997 * 109.46914 * 59.99957 * 3 2 1 27 27 H 1.09004 * 109.46978 * 299.99526 * 3 2 1 28 28 H 1.08999 * 109.47201 * 59.99705 * 4 3 2 29 29 H 1.08998 * 109.46933 * 300.00204 * 4 3 2 30 30 H 1.09002 * 109.47154 * 300.00093 * 11 10 9 31 31 H 1.09001 * 109.47171 * 60.00111 * 11 10 9 32 32 H 1.09002 * 109.47153 * 300.00184 * 12 11 10 33 33 H 1.08998 * 109.47533 * 59.99813 * 12 11 10 34 34 H 1.09002 * 109.47103 * 300.00247 * 13 12 11 35 35 H 1.09001 * 109.47066 * 60.00169 * 13 12 11 36 36 H 0.97008 * 120.00167 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3306 0.0006 5 7 4.0499 2.6983 0.0000 6 7 4.3570 3.4942 -1.1173 7 7 4.7896 4.6212 -0.6654 8 7 4.7815 4.6199 0.6188 9 6 4.3439 3.4665 1.0755 10 16 4.1665 3.0100 2.7680 11 6 4.7485 4.5271 3.5654 12 6 4.6827 4.3621 5.0851 13 6 5.1753 5.6442 5.7591 14 6 5.1098 5.4819 7.2559 15 1 4.7530 4.5567 7.6837 16 6 5.5065 6.5143 8.0793 17 7 5.4489 6.3728 9.3855 18 14 6.1243 8.1144 7.3394 19 1 4.9817 9.0419 7.1413 20 1 7.1125 8.7354 8.2578 21 1 6.7701 7.8379 6.0311 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8306 -0.5262 -0.7813 26 1 1.6459 1.8947 0.8900 27 1 1.6460 1.8947 -0.8901 28 1 3.8748 0.8071 -0.8891 29 1 3.8740 0.8074 0.8908 30 1 5.7778 4.7235 3.2652 31 1 4.1162 5.3620 3.2633 32 1 3.6533 4.1659 5.3850 33 1 5.3146 3.5272 5.3877 34 1 6.2047 5.8399 5.4591 35 1 4.5436 6.4794 5.4567 36 1 5.7283 7.0990 9.9648 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084377978.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:27 Heat of formation + Delta-G solvation = 104.294614 kcal Electronic energy + Delta-G solvation = -17718.128046 eV Core-core repulsion = 14786.996147 eV Total energy + Delta-G solvation = -2931.131899 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.99181 -37.48213 -34.98929 -34.70711 -32.39807 -32.10294 -30.16524 -28.20949 -26.00698 -24.15324 -23.32289 -23.25431 -22.36996 -20.32301 -18.20182 -17.12429 -17.02261 -16.68146 -16.38030 -15.25880 -15.00130 -14.88386 -14.54953 -14.17788 -14.01873 -13.28070 -12.91135 -12.72557 -12.60001 -12.35906 -12.28432 -12.23787 -11.84495 -11.55152 -11.20519 -11.17538 -10.88783 -10.69175 -10.62713 -10.05859 -9.85480 -9.74592 -9.27783 -9.14027 -8.58399 -8.08984 -6.08857 -4.08312 0.64246 0.70785 1.78627 1.99639 2.10286 3.29915 3.37943 3.41437 3.65630 3.91255 4.20664 4.42029 4.49422 4.67866 4.75400 4.93253 4.97761 5.14487 5.21113 5.22488 5.27453 5.28219 5.34919 5.42982 5.77679 5.84355 6.21959 6.22698 6.33376 6.67302 6.68999 7.15543 7.28337 7.70927 8.27552 8.46362 8.94732 9.52781 11.04221 Molecular weight = 271.12amu Principal moments of inertia in cm(-1) A = 0.025152 B = 0.003558 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.965889 B = 7868.428894 C = 8733.937027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.687 5.687 3 C 0.041 3.959 4 C 0.124 3.876 5 N -0.368 5.368 6 N -0.091 5.091 7 N -0.032 5.032 8 N -0.333 5.333 9 C 0.223 3.777 10 S 0.025 5.975 11 C -0.103 4.103 12 C -0.090 4.090 13 C -0.006 4.006 14 C -0.524 4.524 15 H 0.073 0.927 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.264 1.264 22 H 0.070 0.930 23 H 0.024 0.976 24 H 0.074 0.926 25 H 0.344 0.656 26 H 0.088 0.912 27 H 0.043 0.957 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.021 0.979 35 H 0.016 0.984 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.237 -13.151 -19.811 24.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.318 5.318 3 C -0.089 4.089 4 C 0.001 3.999 5 N -0.168 5.168 6 N -0.078 5.078 7 N -0.028 5.028 8 N -0.190 5.190 9 C -0.161 4.161 10 S 0.252 5.748 11 C -0.251 4.251 12 C -0.130 4.130 13 C -0.045 4.045 14 C -0.562 4.562 15 H 0.091 0.909 16 C -0.133 4.133 17 N -0.540 5.540 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.188 1.188 22 H 0.089 0.911 23 H 0.043 0.957 24 H 0.093 0.907 25 H 0.162 0.838 26 H 0.106 0.894 27 H 0.062 0.938 28 H 0.126 0.874 29 H 0.136 0.864 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.035 0.965 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.207 -13.255 -19.570 24.711 hybrid contribution 0.261 1.520 -1.302 2.019 sum -6.946 -11.735 -20.873 24.932 Atomic orbital electron populations 1.22222 0.86403 1.02516 1.00995 1.60267 1.08879 1.12563 1.50133 1.22307 0.92612 0.91295 1.02734 1.21962 0.94679 0.76614 1.06651 1.51498 1.47162 1.14823 1.03310 1.82419 1.19156 0.98750 1.07521 1.77864 1.09622 1.12245 1.03079 1.75024 1.23404 1.17506 1.03017 1.28064 0.98473 0.90875 0.98721 1.86008 1.80287 1.24757 0.83748 1.24120 1.05671 0.94786 1.00568 1.21384 1.02533 1.01825 0.87287 1.19559 0.96335 0.92067 0.96548 1.21064 1.44110 1.02346 0.88690 0.90854 1.25006 0.95003 0.98621 0.94694 1.69906 1.48134 1.33096 1.02869 0.86799 0.79173 0.83890 0.79591 1.20199 1.21333 1.18817 0.91098 0.95690 0.90717 0.83822 0.89383 0.93830 0.87401 0.86406 0.88302 0.88317 0.91400 0.91362 0.96076 0.96531 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.70 60.06 0.64 0.79 16 2 N -0.69 -4.11 6.86 -121.13 -0.83 -4.94 16 3 C 0.04 0.30 6.01 -3.82 -0.02 0.28 16 4 C 0.12 0.94 6.63 -4.04 -0.03 0.91 16 5 N -0.37 -4.35 3.69 -61.30 -0.23 -4.58 16 6 N -0.09 -1.30 13.93 60.35 0.84 -0.46 16 7 N -0.03 -0.52 13.38 60.35 0.81 0.28 16 8 N -0.33 -5.39 11.57 30.50 0.35 -5.04 16 9 C 0.22 3.04 8.15 -89.18 -0.73 2.31 16 10 S 0.02 0.30 21.79 -107.50 -2.34 -2.04 16 11 C -0.10 -1.53 5.23 37.16 0.19 -1.34 16 12 C -0.09 -1.60 5.16 -26.74 -0.14 -1.74 16 13 C -0.01 -0.12 4.04 -27.89 -0.11 -0.24 16 14 C -0.52 -14.39 9.66 -34.44 -0.33 -14.72 16 15 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 17 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 18 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 22 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.02 0.13 8.14 -51.93 -0.42 -0.30 16 24 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.34 1.43 8.82 -39.29 -0.35 1.09 16 26 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.12 0.80 7.85 -51.93 -0.41 0.40 16 30 H 0.10 1.49 8.14 -51.92 -0.42 1.06 16 31 H 0.10 1.48 8.14 -51.92 -0.42 1.05 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 35 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 323.60 15.07 4.88 4.88 Total: -1.00 -31.69 323.60 -6.37 -38.06 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -5.33 Total: -4.40 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -0.62 Total: -11.88 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 1.72 Total: -41.26 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -2.34 Total: -2.04 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.69 -6.37 -38.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084377978.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.358 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds