Wall clock time and date at job start Mon Mar 30 2020 04:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00051 * 2 1 4 4 C 1.53002 * 109.47200 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47159 * 179.97438 * 4 3 2 6 6 N 1.40580 * 127.38506 * 269.95803 * 5 4 3 7 7 N 1.28905 * 106.83588 * 180.02562 * 6 5 4 8 8 N 1.28423 * 110.33647 * 359.72579 * 7 6 5 9 9 C 1.31542 * 110.50029 * 0.45729 * 8 7 6 10 10 S 1.76198 * 126.45130 * 179.81686 * 9 8 7 11 11 C 1.81002 * 100.00092 * 359.69140 * 10 9 8 12 12 C 1.52997 * 109.47326 * 179.97438 * 11 10 9 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47592 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00057 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00356 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00113 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99923 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47375 * 89.99678 * 18 16 14 20 20 H 1.48508 * 109.47196 * 209.99673 * 18 16 14 21 21 H 1.48504 * 109.47051 * 329.99297 * 18 16 14 22 22 H 1.08995 * 109.47025 * 299.99950 * 1 2 3 23 23 H 1.09004 * 109.47034 * 60.00383 * 1 2 3 24 24 H 1.08998 * 109.46935 * 179.97438 * 1 2 3 25 25 H 1.00896 * 111.00107 * 236.04205 * 2 1 3 26 26 H 1.08997 * 109.46914 * 59.99957 * 3 2 1 27 27 H 1.09004 * 109.46978 * 299.99526 * 3 2 1 28 28 H 1.08999 * 109.47201 * 59.99705 * 4 3 2 29 29 H 1.08998 * 109.46933 * 300.00204 * 4 3 2 30 30 H 1.09002 * 109.47154 * 300.00093 * 11 10 9 31 31 H 1.09001 * 109.47171 * 60.00111 * 11 10 9 32 32 H 1.09002 * 109.47153 * 300.00184 * 12 11 10 33 33 H 1.08998 * 109.47533 * 59.99813 * 12 11 10 34 34 H 1.09002 * 109.47103 * 300.00247 * 13 12 11 35 35 H 1.09001 * 109.47066 * 60.00169 * 13 12 11 36 36 H 0.97008 * 120.00167 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3306 0.0006 5 7 4.0499 2.6983 0.0000 6 7 4.3570 3.4942 -1.1173 7 7 4.7896 4.6212 -0.6654 8 7 4.7815 4.6199 0.6188 9 6 4.3439 3.4665 1.0755 10 16 4.1665 3.0100 2.7680 11 6 4.7485 4.5271 3.5654 12 6 4.6827 4.3621 5.0851 13 6 5.1753 5.6442 5.7591 14 6 5.1098 5.4819 7.2559 15 1 4.7530 4.5567 7.6837 16 6 5.5065 6.5143 8.0793 17 7 5.4489 6.3728 9.3855 18 14 6.1243 8.1144 7.3394 19 1 4.9817 9.0419 7.1413 20 1 7.1125 8.7354 8.2578 21 1 6.7701 7.8379 6.0311 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8306 -0.5262 -0.7813 26 1 1.6459 1.8947 0.8900 27 1 1.6460 1.8947 -0.8901 28 1 3.8748 0.8071 -0.8891 29 1 3.8740 0.8074 0.8908 30 1 5.7778 4.7235 3.2652 31 1 4.1162 5.3620 3.2633 32 1 3.6533 4.1659 5.3850 33 1 5.3146 3.5272 5.3877 34 1 6.2047 5.8399 5.4591 35 1 4.5436 6.4794 5.4567 36 1 5.7283 7.0990 9.9648 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084377978.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:27 Heat of formation + Delta-G solvation = 81.701557 kcal Electronic energy + Delta-G solvation = -17719.107755 eV Core-core repulsion = 14786.996147 eV Total energy + Delta-G solvation = -2932.111607 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.05860 -38.10621 -36.43730 -35.71023 -34.18148 -33.41219 -30.87133 -29.96299 -26.74036 -25.34385 -24.52763 -24.28656 -23.22849 -21.94032 -19.28104 -18.75075 -18.04199 -17.83203 -17.09049 -16.54291 -16.28032 -15.89735 -15.69648 -15.11745 -14.90250 -14.64633 -14.14076 -13.91178 -13.85623 -13.66740 -13.51932 -13.07487 -12.76104 -12.72580 -12.54744 -12.32173 -12.16425 -11.96720 -11.77024 -11.60499 -11.55031 -11.41534 -11.32540 -10.73786 -9.61252 -9.09565 -8.26886 -6.30818 -0.39920 -0.32649 0.79812 0.96716 0.98249 1.39580 1.41508 1.52681 2.38612 3.06605 3.09337 3.15263 3.57531 3.67598 3.93372 3.98085 3.98747 4.07475 4.13434 4.47754 4.48952 4.50507 4.64054 4.68682 4.74682 4.87873 4.92202 5.04125 5.04743 5.45827 5.54510 5.66885 5.73500 6.29433 6.32758 6.77651 7.18058 7.34023 8.89577 Molecular weight = 271.12amu Principal moments of inertia in cm(-1) A = 0.025152 B = 0.003558 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.965889 B = 7868.428894 C = 8733.937027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.689 5.689 3 C 0.050 3.950 4 C 0.116 3.884 5 N -0.354 5.354 6 N -0.092 5.092 7 N -0.058 5.058 8 N -0.359 5.359 9 C 0.213 3.787 10 S 0.078 5.922 11 C -0.107 4.107 12 C -0.081 4.081 13 C -0.007 4.007 14 C -0.530 4.530 15 H 0.038 0.962 16 C 0.006 3.994 17 N -0.951 5.951 18 Si 0.945 3.055 19 H -0.268 1.268 20 H -0.287 1.287 21 H -0.244 1.244 22 H 0.062 0.938 23 H 0.027 0.973 24 H 0.087 0.913 25 H 0.356 0.644 26 H 0.075 0.925 27 H 0.037 0.963 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.025 0.975 35 H 0.023 0.977 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.381 -13.858 -21.760 26.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.322 5.322 3 C -0.081 4.081 4 C -0.005 4.005 5 N -0.154 5.154 6 N -0.080 5.080 7 N -0.053 5.053 8 N -0.216 5.216 9 C -0.171 4.171 10 S 0.305 5.695 11 C -0.256 4.256 12 C -0.121 4.121 13 C -0.047 4.047 14 C -0.569 4.569 15 H 0.056 0.944 16 C -0.191 4.191 17 N -0.592 5.592 18 Si 0.769 3.231 19 H -0.193 1.193 20 H -0.213 1.213 21 H -0.168 1.168 22 H 0.081 0.919 23 H 0.045 0.955 24 H 0.106 0.894 25 H 0.175 0.825 26 H 0.094 0.906 27 H 0.055 0.945 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.363 -13.996 -21.545 26.726 hybrid contribution 0.222 1.548 -0.692 1.710 sum -7.141 -12.448 -22.237 26.466 Atomic orbital electron populations 1.22255 0.86008 1.03296 1.00707 1.60260 1.09287 1.11705 1.50903 1.22158 0.92191 0.91964 1.01835 1.22378 0.94919 0.74669 1.08546 1.51706 1.45964 1.15574 1.02158 1.82326 1.18717 0.98603 1.08346 1.77845 1.10940 1.13220 1.03324 1.74932 1.24460 1.18963 1.03259 1.28184 0.98615 0.90778 0.99547 1.85783 1.79655 1.21775 0.82260 1.23862 1.06127 0.96792 0.98809 1.21115 1.02302 0.99508 0.89157 1.19507 0.96903 0.94756 0.93508 1.21469 1.42859 1.00875 0.91659 0.94357 1.25960 0.95493 1.02680 0.94994 1.70059 1.50046 1.34520 1.04574 0.85729 0.78840 0.79140 0.79399 1.19302 1.21290 1.16785 0.91907 0.95483 0.89424 0.82464 0.90646 0.94481 0.84945 0.85110 0.88229 0.88214 0.91328 0.91297 0.95687 0.95848 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.70 127.69 1.37 1.60 16 2 N -0.69 -6.60 6.86 -537.15 -3.68 -10.28 16 3 C 0.05 0.61 6.01 86.30 0.52 1.13 16 4 C 0.12 1.44 6.63 86.38 0.57 2.01 16 5 N -0.35 -7.63 3.69 -347.87 -1.28 -8.91 16 6 N -0.09 -2.49 13.93 37.02 0.52 -1.97 16 7 N -0.06 -1.82 13.38 37.02 0.50 -1.32 16 8 N -0.36 -11.17 11.57 -57.41 -0.66 -11.84 16 9 C 0.21 5.41 8.15 179.85 1.47 6.87 16 10 S 0.08 1.75 21.79 -56.49 -1.23 0.52 16 11 C -0.11 -2.98 5.23 71.98 0.38 -2.61 16 12 C -0.08 -2.78 5.16 30.59 0.16 -2.62 16 13 C -0.01 -0.32 4.04 29.84 0.12 -0.20 16 14 C -0.53 -29.45 9.66 25.60 0.25 -29.20 16 15 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 16 C 0.01 0.32 5.47 84.65 0.46 0.79 16 17 N -0.95 -58.92 13.96 21.45 0.30 -58.62 16 18 Si 0.95 43.60 27.47 68.60 1.88 45.48 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 22 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.03 0.23 8.14 -2.38 -0.02 0.21 16 24 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.36 1.98 8.82 -89.70 -0.79 1.19 16 26 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.13 1.36 7.85 -2.39 -0.02 1.34 16 30 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.02 1.07 7.20 -2.39 -0.02 1.06 16 35 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 36 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 Total: -1.00 -68.75 323.60 1.85 -66.89 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: 0.23 Total: 2.28 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: 5.29 Total: -22.22 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -4.32 Total: -92.95 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.48 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -1.23 Total: 0.52 kcal Total: -68.75 1.85 -66.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084377978.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.594 kcal (2) G-P(sol) polarization free energy of solvation -68.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds