Wall clock time and date at job start Mon Mar 30 2020 05:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 110.99771 * 2 1 4 4 C 1.50701 * 109.47195 * 293.95760 * 3 2 1 5 5 H 1.08002 * 119.99761 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99694 * 180.27796 * 4 3 2 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 3 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 3 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.46897 * 111.00356 * 123.95278 * 2 1 3 13 13 H 1.08996 * 109.53709 * 296.21561 * 12 2 1 14 14 C 1.53168 * 109.54200 * 176.04842 * 12 2 1 15 15 C 1.53093 * 109.13258 * 183.16289 * 14 12 2 16 16 O 1.42854 * 109.44959 * 57.59640 * 15 14 12 17 17 C 1.43262 * 114.00451 * 298.56070 * 16 15 14 18 18 C 1.53193 * 109.06805 * 180.53585 * 17 16 15 19 19 C 1.55089 * 109.02359 * 90.18282 * 18 17 16 20 20 S 1.83975 * 100.87859 * 41.65870 * 19 18 17 21 21 C 1.53940 * 108.67382 * 303.15598 * 17 16 15 22 22 C 1.53138 * 109.53364 * 56.45526 * 12 2 1 23 23 H 1.09002 * 109.47259 * 60.00262 * 1 2 3 24 24 H 1.09003 * 109.46525 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47311 * 299.99377 * 1 2 3 26 26 H 1.09000 * 109.47038 * 173.94903 * 3 2 1 27 27 H 1.09007 * 109.46566 * 53.95436 * 3 2 1 28 28 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.52375 * 303.05736 * 14 12 2 30 30 H 1.09003 * 109.52355 * 63.26347 * 14 12 2 31 31 H 1.08999 * 109.47370 * 177.58955 * 15 14 12 32 32 H 1.09002 * 109.46813 * 297.60446 * 15 14 12 33 33 H 1.09004 * 109.59426 * 210.12858 * 18 17 16 34 34 H 1.08999 * 109.59735 * 330.22992 * 18 17 16 35 35 H 1.08994 * 111.14270 * 159.56478 * 19 18 17 36 36 H 1.09003 * 111.13608 * 283.75878 * 19 18 17 37 37 H 1.08999 * 110.32425 * 1.11961 * 21 17 16 38 38 H 1.09007 * 110.31705 * 123.31920 * 21 17 16 39 39 H 1.08997 * 109.53676 * 297.00291 * 22 12 2 40 40 H 1.09003 * 109.53161 * 57.23344 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0745 1.5113 -2.0487 6 6 2.0320 3.3475 -1.5309 7 7 2.7170 4.0000 -0.6174 8 14 1.5942 4.1825 -3.1435 9 1 0.2838 4.8676 -3.0064 10 1 2.6406 5.1793 -3.4849 11 1 1.5100 3.1644 -4.2213 12 6 1.9955 -0.7659 1.1375 13 1 1.7025 -0.2824 2.0694 14 6 3.5235 -0.8273 1.0506 15 6 4.0568 -1.6930 2.1951 16 8 3.4729 -2.9945 2.1190 17 6 2.0462 -3.0017 2.2488 18 6 1.5432 -4.4463 2.1647 19 6 1.5059 -5.0524 3.5918 20 16 0.8256 -3.6382 4.5520 21 6 1.6692 -2.3308 3.5821 22 6 1.4345 -2.1903 1.0994 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 3.0797 1.3445 0.1083 27 1 1.5610 1.9273 0.8310 28 1 2.9954 4.9146 -0.7811 29 1 3.8168 -1.2642 0.0960 30 1 3.9338 0.1792 1.1332 31 1 5.1406 -1.7757 2.1136 32 1 3.7979 -1.2337 3.1491 33 1 0.5414 -4.4601 1.7354 34 1 2.2150 -5.0313 1.5366 35 1 0.8397 -5.9139 3.6357 36 1 2.5071 -5.3143 3.9339 37 1 2.5653 -1.9923 4.1022 38 1 0.9932 -1.4939 3.4068 39 1 0.3509 -2.1584 1.2122 40 1 1.6894 -2.6570 0.1478 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094375330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:29 Heat of formation + Delta-G solvation = -40.938724 kcal Electronic energy + Delta-G solvation = -19908.891168 eV Core-core repulsion = 17042.709072 eV Total energy + Delta-G solvation = -2866.182097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.23615 -36.71714 -34.64105 -32.89020 -31.42439 -30.23261 -28.30359 -27.05730 -25.56634 -24.26944 -22.77173 -21.70254 -20.00579 -19.02733 -17.02763 -16.56888 -16.39541 -15.50844 -15.35582 -14.88043 -14.71306 -14.09060 -13.92108 -13.51626 -13.26302 -12.99326 -12.80480 -12.53263 -12.09061 -11.97985 -11.87822 -11.67628 -11.36439 -11.30592 -11.16503 -10.85568 -10.75888 -10.64834 -10.23047 -10.15094 -10.05478 -9.73193 -9.35327 -9.18481 -8.45383 -7.83175 -7.29179 -6.05950 -4.06965 1.71213 2.17478 3.29524 3.35978 3.40225 3.67294 4.25759 4.37362 4.47027 4.70163 4.80798 4.95049 5.00358 5.11197 5.26168 5.28411 5.30274 5.38811 5.45558 5.52043 5.59220 5.65305 5.81659 5.83648 5.89133 6.08846 6.10143 6.23246 6.28846 6.46487 6.63999 6.71322 7.20216 7.25793 7.29393 7.76796 8.04865 8.15350 8.51222 9.00474 9.57308 11.04988 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.037354 B = 0.004329 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.408883 B = 6465.888839 C = 6654.737291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.534 5.534 3 C 0.189 3.811 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.084 3.916 13 H 0.030 0.970 14 C -0.148 4.148 15 C 0.057 3.943 16 O -0.372 6.372 17 C 0.118 3.882 18 C -0.111 4.111 19 C -0.065 4.065 20 S -0.300 6.300 21 C -0.096 4.096 22 C -0.131 4.131 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.010 0.990 26 H 0.036 0.964 27 H -0.012 1.012 28 H 0.261 0.739 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.859 -15.800 7.567 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.259 5.259 3 C 0.065 3.935 4 C -0.546 4.546 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.025 4.025 13 H 0.048 0.952 14 C -0.186 4.186 15 C -0.019 4.019 16 O -0.292 6.292 17 C 0.077 3.923 18 C -0.150 4.150 19 C -0.213 4.213 20 S -0.074 6.074 21 C -0.244 4.244 22 C -0.170 4.170 23 H 0.092 0.908 24 H 0.066 0.934 25 H 0.029 0.971 26 H 0.054 0.946 27 H 0.006 0.994 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.261 -15.955 8.099 17.937 hybrid contribution 0.192 1.407 -0.939 1.702 sum -1.069 -14.548 7.160 16.249 Atomic orbital electron populations 1.22259 0.88958 0.99291 1.00875 1.62186 1.06757 1.17812 1.39123 1.19811 0.95785 0.81383 0.96563 1.21158 1.34702 0.97014 1.01678 0.91905 1.24978 0.95268 0.97343 0.96992 1.69950 1.38328 1.11529 1.34087 0.86510 0.77987 0.79236 0.83769 1.20756 1.21241 1.19764 1.21570 0.94592 0.92984 0.93393 0.95224 1.22282 0.95559 1.01176 0.99566 1.22715 0.98068 0.83374 0.97792 1.88027 1.18688 1.28848 1.93626 1.22261 0.82417 0.94773 0.92898 1.22333 1.03008 0.93189 0.96437 1.24323 1.03965 0.97585 0.95425 1.87783 1.65653 1.04747 1.49225 1.24874 1.03483 0.99158 0.96859 1.22413 1.00363 0.95780 0.98397 0.90767 0.93359 0.97104 0.94606 0.99382 0.92926 0.90193 0.89847 0.88584 0.93171 0.88934 0.88736 0.87528 0.88873 0.88219 0.87487 0.90649 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.00 60.07 0.54 1.20 16 2 N -0.53 -11.17 4.62 -236.14 -1.09 -12.27 16 3 C 0.19 4.82 4.54 -4.97 -0.02 4.79 16 4 C -0.51 -14.06 8.51 -34.44 -0.29 -14.35 16 5 H 0.06 1.73 7.10 -52.49 -0.37 1.36 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 8 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.08 1.43 1.74 -67.56 -0.12 1.32 16 13 H 0.03 0.53 6.59 -51.93 -0.34 0.19 16 14 C -0.15 -2.41 5.12 -26.60 -0.14 -2.55 16 15 C 0.06 0.76 6.48 37.21 0.24 1.00 16 16 O -0.37 -5.06 10.15 -35.23 -0.36 -5.41 16 17 C 0.12 1.46 1.01 -89.81 -0.09 1.37 16 18 C -0.11 -1.12 5.50 -25.53 -0.14 -1.26 16 19 C -0.07 -0.61 7.52 38.26 0.29 -0.33 16 20 S -0.30 -3.67 23.22 -107.50 -2.50 -6.16 16 21 C -0.10 -1.20 5.53 37.65 0.21 -0.99 16 22 C -0.13 -1.84 3.38 -26.44 -0.09 -1.93 16 23 H 0.07 1.52 6.86 -51.93 -0.36 1.16 16 24 H 0.05 0.77 6.09 -51.93 -0.32 0.46 16 25 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.04 0.96 5.90 -51.93 -0.31 0.65 16 27 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 30 H 0.08 1.50 6.39 -51.93 -0.33 1.17 16 31 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.63 6.05 -51.93 -0.31 0.32 16 33 H 0.09 0.86 7.84 -51.93 -0.41 0.46 16 34 H 0.09 0.90 8.06 -51.93 -0.42 0.48 16 35 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 1.25 6.04 -51.93 -0.31 0.93 16 38 H 0.11 1.42 6.47 -51.93 -0.34 1.09 16 39 H 0.08 1.02 6.45 -51.93 -0.34 0.69 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 311.05 15.07 4.69 4.69 Total: -1.00 -29.67 311.05 -9.49 -39.17 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.24 Total: -0.51 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 0.29 Total: -10.28 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: -0.36 Total: -37.95 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.36 Total: -5.41 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -2.50 Total: -6.16 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.67 -9.49 -39.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.772 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds